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Lethal Infectious Diseases as Inborn Errors of Immunity: Toward a Synthesis of the Germ and Genetic Theories. 致命的传染病是先天的免疫错误:迈向细菌和遗传理论的综合。
IF 28.4 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 Epub Date: 2020-04-14 DOI: 10.1146/annurev-pathol-031920-101429
Jean-Laurent Casanova, Laurent Abel

It was first demonstrated in the late nineteenth century that human deaths from fever were typically due to infections. As the germ theory gained ground, it replaced the old, unproven theory that deaths from fever reflected a weak personal or even familial constitution. A new enigma emerged at the turn of the twentieth century, when it became apparent that only a small proportion of infected individuals die from primary infections with almost any given microbe. Classical genetics studies gradually revealed that severe infectious diseases could be driven by human genetic predisposition. This idea gained ground with the support of molecular genetics, in three successive, overlapping steps. First, many rare inborn errors of immunity were shown, from 1985 onward, to underlie multiple, recurrent infections with Mendelian inheritance. Second, a handful of rare and familial infections, also segregating as Mendelian traits but striking humans resistant to other infections, were deciphered molecularly beginning in 1996. Third, from 2007 onward, a growing number of rare or common sporadicinfections were shown to result from monogenic, but not Mendelian, inborn errors. A synthesis of the hitherto mutually exclusive germ and genetic theories is now in view.

19世纪晚期首次证明,人类因发烧而死亡的典型原因是感染。随着细菌理论的普及,它取代了旧的、未经证实的理论,即发烧死亡反映了个人甚至家族体质的薄弱。在20世纪之交,一个新的谜团出现了,当时很明显,只有一小部分感染者死于几乎任何给定微生物的原发性感染。经典遗传学研究逐渐揭示,严重的传染病可能是由人类遗传易感性驱动的。在分子遗传学的支持下,这个想法在三个连续的、重叠的步骤中获得了支持。首先,从1985年开始,许多罕见的先天性免疫缺陷被证明是孟德尔遗传的多重复发性感染的基础。其次,从1996年开始,一些罕见的和家族性的感染,也作为孟德尔特征分离出来,但引人注目的是人类对其他感染的抵抗力,被分子地破译了。第三,从2007年开始,越来越多的罕见或常见的零星感染被证明是由单基因而不是孟德尔遗传的先天错误造成的。迄今为止相互排斥的胚芽和遗传理论的综合现在正在考虑之中。
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引用次数: 0
Perspectives and Advances in the Understanding of Tuberculosis. 理解结核病的前景和进展。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 DOI: 10.1146/annurev-pathol-042120-032916
Rachel L Kinsella, Dennis X Zhu, Gregory A Harrison, Anne E Mayer Bridwell, Jerome Prusa, Sthefany M Chavez, Christina L Stallings

Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), remains a leading cause of death due to infection in humans. To more effectively combat this pandemic, many aspects of TB control must be developed, including better point of care diagnostics, shorter and safer drug regimens, and a protective vaccine. To address all these areas of need, better understanding of the pathogen, host responses, and clinical manifestations of the disease is required. Recently, the application of cutting-edge technologies to the study of Mtb pathogenesis has resulted in significant advances in basic biology, vaccine development, and antibiotic discovery. This leaves us in an exciting era of Mtb research in which our understanding of this deadly infection is improving at a faster rate than ever, and renews hope in our fight to end TB. In this review, we reflect on what is known regarding Mtb pathogenesis, highlighting recent breakthroughs that will provide leverage for the next leaps forward in the field.

结核分枝杆菌(Mtb)是结核病的病原体,仍然是人类感染致死的主要原因。为了更有效地抗击这一流行病,必须开发结核病控制的许多方面,包括更好的护理点诊断、更短、更安全的药物治疗方案以及保护性疫苗。为了解决所有这些需要的领域,需要更好地了解病原体、宿主反应和疾病的临床表现。最近,将尖端技术应用于结核分枝杆菌发病机制的研究,在基础生物学、疫苗开发和抗生素发现方面取得了重大进展。这让我们进入了一个令人兴奋的结核分枝杆菌研究时代,在这个时代,我们对这种致命感染的理解正在以比以往更快的速度提高,并重新燃起了我们对抗结核病的希望。在这篇综述中,我们反思了已知的Mtb发病机制,强调了最近的突破,这些突破将为该领域的下一次飞跃提供杠杆。
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引用次数: 22
Metabolic Gatekeepers of Pathological B Cell Activation. 病理性B细胞活化的代谢守门人。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 Epub Date: 2020-12-15 DOI: 10.1146/annurev-pathol-061020-050135
Teresa Sadras, Lai N Chan, Gang Xiao, Markus Müschen

Unlike other cell types, B cells undergo multiple rounds of V(D)J recombination and hypermutation to evolve high-affinity antibodies. Reflecting high frequencies of DNA double-strand breaks, adaptive immune protection by B cells comes with an increased risk of malignant transformation. In addition, the vast majority of newly generated B cells express an autoreactive B cell receptor (BCR). Thus, B cells are under intense selective pressure to remove autoreactive and premalignant clones. Despite stringent negative selection, B cells frequently give rise to autoimmune disease and B cell malignancies. In this review, we discuss mechanisms that we term metabolic gatekeepers to eliminate pathogenic B cell clones on the basis of energy depletion. Chronic activation signals from autoreactive BCRs or transforming oncogenes increase energy demands in autoreactive and premalignant B cells. Thus, metabolic gatekeepers limit energy supply to levels that are insufficient to fuel either a transforming oncogene or hyperactive signaling from an autoreactive BCR.

与其他细胞类型不同,B细胞经过多轮V(D)J重组和超突变进化出高亲和力抗体。反映DNA双链断裂的高频率,B细胞的适应性免疫保护伴随着恶性转化的风险增加。此外,绝大多数新生成的B细胞表达一种自身反应性B细胞受体(BCR)。因此,B细胞在强烈的选择压力下去除自身反应性和癌前克隆。尽管有严格的阴性选择,B细胞经常引起自身免疫性疾病和B细胞恶性肿瘤。在这篇综述中,我们讨论了我们称之为代谢守门人的机制,以能量消耗为基础消除致病性B细胞克隆。来自自身反应性bcr或转化癌基因的慢性激活信号增加了自身反应性和癌前B细胞的能量需求。因此,代谢守门人将能量供应限制在不足以为转化癌基因或自反应性BCR的过度活跃信号提供能量的水平。
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引用次数: 8
The Spectrum of Helicobacter-Mediated Diseases. 幽门螺杆菌介导疾病的光谱。
IF 28.4 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 Epub Date: 2020-11-16 DOI: 10.1146/annurev-pathol-032520-024949
Karen Robinson, John C Atherton

Helicobacter pylori is the leading cause of peptic ulcer disease. The infection has been implicated in more than 75% of duodenal ulcer cases and 17% of gastric ulcer cases. H. pylori has been classified as a human carcinogen, since it is the main cause of distal gastric adenocarcinoma and B cell mucosa-associated lymphoid tissue lymphoma. Evidence also links H. pylori with extragastric conditions including iron deficiency anemia, idiopathic thrombocytopenic purpura, and vitamin B12 deficiency. Studies indicate that H. pylori may be protective against other conditions of the gastrointestinal tract (e.g., reflux esophagitis and related pathologies) and elsewhere in the body (e.g., asthma). The infection is asymptomatic in the vast majority of cases; more serious outcomes occur in only 10-15% of infected individuals. Despite extensive research over the past 3 decades, there is no effective vaccine, and the circumstances leading to disease development remain unclear. In addition, there is now a growing prevalence of antimicrobial resistance in H. pylori. This review discusses these important issues.

幽门螺杆菌是消化性溃疡的主要病因。超过75%的十二指肠溃疡病例和17%的胃溃疡病例与这种感染有关。幽门螺杆菌已被列为人类致癌物,因为它是远端胃腺癌和B细胞粘膜相关淋巴组织淋巴瘤的主要病因。也有证据表明幽门螺杆菌与胃外疾病有关,包括缺铁性贫血、特发性血小板减少性紫癜和维生素B12缺乏症。研究表明,幽门螺杆菌可能对胃肠道的其他疾病(如反流性食管炎和相关病理)和身体其他部位(如哮喘)具有保护作用。绝大多数病例的感染是无症状的;只有10-15%的感染者出现更严重的后果。尽管在过去30年里进行了广泛的研究,但没有有效的疫苗,导致疾病发展的环境仍不清楚。此外,现在幽门螺杆菌的抗菌素耐药性越来越普遍。本文将讨论这些重要问题。
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引用次数: 0
The Hippo Pathway in Liver Homeostasis and Pathophysiology. Hippo通路在肝脏稳态和病理生理中的作用。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 Epub Date: 2020-11-24 DOI: 10.1146/annurev-pathol-030420-105050
Jordan H Driskill, Duojia Pan

Studies of the regenerative capacity of the liver have converged on the Hippo pathway, a serine/threonine kinase cascade discovered in Drosophila and conserved from unicellular organisms to mammals. Genetic studies of mouse and rat livers have revealed that the Hippo pathway is a key regulator of liver size, regeneration, development, metabolism, and homeostasis and that perturbations in the Hippo pathway can lead to the development of common liver diseases, such as fatty liver disease and liver cancer. In turn, pharmacological targeting of the Hippo pathway may be utilized to boost regeneration and to prevent the development and progression of liver diseases. We review current insights provided by the Hippo pathway into liver pathophysiology. Furthermore, we present a path forward for future studies to understand how newly identified components of the Hippo pathway may control liver physiology and how the Hippo pathway is regulated in the liver.

肝脏再生能力的研究已经集中在Hippo通路上,这是一种在果蝇中发现的丝氨酸/苏氨酸激酶级联反应,从单细胞生物到哺乳动物都保存下来。对小鼠和大鼠肝脏的遗传研究表明,Hippo通路是肝脏大小、再生、发育、代谢和稳态的关键调节因子,Hippo通路的扰动可导致常见肝脏疾病的发展,如脂肪肝和肝癌。反过来,Hippo通路的药理学靶向可用于促进再生和预防肝脏疾病的发生和进展。我们回顾了目前Hippo通路在肝脏病理生理学方面提供的见解。此外,我们为未来的研究提出了一条前进的道路,以了解新发现的Hippo通路成分如何控制肝脏生理,以及Hippo通路如何在肝脏中受到调节。
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引用次数: 52
The Accidental Pathologist: A Curiosity-Driven Journey from Plant Evolution to Innate Immunity. 意外病理学家:从植物进化到先天免疫的好奇心驱动之旅。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 DOI: 10.1146/annurev-pathmechdis-012419-032855
Vinay Kumar

I have had the singular opportunity to perform research and to participate in medical education. Not unexpectedly, people have asked me which of the two was more important to me. My answer has always been and remains that I am equally passionate about research and teaching. My research has been curiosity driven and not purposeful; hence, I was willing to take risks. That my research led to the discovery of natural killer cells and the unraveling of the molecular basis of a human disease was an unexpected reward. By contrast, my interest in medical education was purposeful, with the goal of improving healthcare by teaching pathology as the scientific foundation of medicine. It started with participation in Robbins pathology texts but progressed toward development of technology-based tools for medical education. This was driven by the belief that technology, by providing equal access to knowledge across the world, can be a powerful democratizing force.

我曾有过进行研究和参与医学教育的难得机会。不出所料,人们问我两者中哪一个对我更重要。我的回答一直是,而且现在仍然是,我对研究和教学同样充满热情。我的研究一直是好奇心驱使的,没有目的;因此,我愿意冒险。我的研究导致了自然杀伤细胞的发现,揭示了人类疾病的分子基础,这是一个意想不到的回报。相比之下,我对医学教育的兴趣是有目的的,目的是通过教授病理学作为医学的科学基础来改善医疗保健。它开始于参与罗宾斯病理文本,但发展到医学教育的技术为基础的工具。这是由这样一种信念推动的,即技术通过在全世界提供平等的知识获取机会,可以成为一股强大的民主化力量。
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引用次数: 0
Monocytes in the Tumor Microenvironment. 肿瘤微环境中的单核细胞。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 DOI: 10.1146/annurev-pathmechdis-012418-013058
Stefano Ugel, Stefania Canè, Francesco De Sanctis, Vincenzo Bronte

Immunotherapy has revolutionized cancer treatment over the past decade. Nonetheless, prolonged survival is limited to relatively few patients. Cancers enforce a multifaceted immune-suppressive network whose nature is progressively shaped by systemic and local cues during tumor development. Monocytes bridge innate and adaptive immune responses and can affect the tumor microenvironment through various mechanisms that induce immune tolerance, angiogenesis, and increased dissemination of tumor cells. Yet monocytes can also give rise to antitumor effectors and activate antigen-presenting cells. This yin-yang activity relies on the plasticity of monocytes in response to environmental stimuli. In this review, we summarize current knowledge of the ontogeny, heterogeneity, and functions of monocytes and monocyte-derived cells in cancer, pinpointing the main pathways that are important for modeling the immunosuppressive tumor microenvironment.

在过去的十年里,免疫疗法彻底改变了癌症治疗。尽管如此,延长生存期仅限于相对较少的患者。癌症强化了一个多方面的免疫抑制网络,其性质在肿瘤发展过程中逐渐受到系统和局部线索的影响。单核细胞架起先天免疫和适应性免疫反应的桥梁,通过诱导免疫耐受、血管生成和肿瘤细胞传播增加等多种机制影响肿瘤微环境。然而,单核细胞也可以产生抗肿瘤效应物并激活抗原提呈细胞。这种阴阳活动依赖于单核细胞对环境刺激的可塑性。在这篇综述中,我们总结了目前关于单核细胞和单核细胞衍生细胞在癌症中的个体发生、异质性和功能的知识,并指出了对免疫抑制肿瘤微环境建模重要的主要途径。
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引用次数: 99
Genetic Disease and Therapy. 遗传疾病和治疗。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 DOI: 10.1146/annurev-pathmechdis-012419-032626
Theodore L Roth, Alexander Marson
Genetic diseases cause numerous complex and intractable pathologies. DNA sequences encoding each human's complexity and many disease risks are contained in the mitochondrial genome, nuclear genome, and microbial metagenome. Diagnosis of these diseases has unified around applications of next-generation DNA sequencing. However, translating specific genetic diagnoses into targeted genetic therapies remains a central goal. To date, genetic therapies have fallen into three broad categories: bulk replacement of affected genetic compartments with a new exogenous genome, nontargeted addition of exogenous genetic material to compensate for genetic errors, and most recently, direct correction of causative genetic alterations using gene editing. Generalized methods of diagnosis, therapy, and reagent delivery into each genetic compartment will accelerate the next generations of curative genetic therapies. We discuss the structure and variability of the mitochondrial, nuclear, and microbial metagenomic compartments, as well as the historical development and current practice of genetic diagnostics and gene therapies targeting each compartment.
遗传性疾病引起许多复杂和棘手的病理。编码每个人的复杂性和许多疾病风险的DNA序列包含在线粒体基因组、核基因组和微生物宏基因组中。这些疾病的诊断已经统一围绕下一代DNA测序的应用。然而,将特定的基因诊断转化为有针对性的基因治疗仍然是一个中心目标。迄今为止,基因治疗分为三大类:用新的外源基因组大量替换受影响的遗传区室,非靶向添加外源遗传物质以补偿遗传错误,以及最近使用基因编辑直接纠正致病基因改变。广义的诊断、治疗和试剂递送到每个遗传室的方法将加速下一代的治疗性基因疗法。我们讨论了线粒体、细胞核和微生物宏基因组区室的结构和可变性,以及针对每个区室的遗传诊断和基因治疗的历史发展和当前实践。
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引用次数: 17
Pathogenesis of Cholangiocarcinoma. 胆管癌的发病机制。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 Epub Date: 2020-12-02 DOI: 10.1146/annurev-pathol-030220-020455
Pedro M Rodrigues, Paula Olaizola, Nuno A Paiva, Irene Olaizola, Alona Agirre-Lizaso, Ana Landa, Luis Bujanda, Maria J Perugorria, Jesus M Banales

Cholangiocarcinoma (CCA) encompasses a group of malignancies that can arise at any point in the biliary tree. Although considered a rare cancer, the incidence of CCA is increasing globally. The silent and asymptomatic nature of these tumors, particularly in their early stages, in combination with their high aggressiveness, intra- and intertumor heterogeneity, and chemoresistance, significantly compromises the efficacy of current therapeutic options, contributing to a dismal prognosis. During the last few years, increasing efforts have been made to unveil the etiologies and pathogenesis of these tumors and to develop more effective therapies. In this review, we summarize current findings in the field of CCA, mainly focusing on the mechanisms of pathogenesis, cells of origin, genomic and epigenetic abnormalities, molecular alterations, chemoresistance, and therapies.

胆管癌(CCA)包括一组恶性肿瘤,可出现在胆道树的任何一点。虽然被认为是一种罕见的癌症,但CCA的发病率在全球范围内正在增加。这些肿瘤的沉默性和无症状性,特别是在早期阶段,再加上它们的高侵袭性、肿瘤内和肿瘤间的异质性和化疗耐药性,极大地影响了当前治疗方案的疗效,导致预后不佳。在过去的几年里,越来越多的努力已经揭示了这些肿瘤的病因和发病机制,并开发更有效的治疗方法。本文就CCA的发病机制、细胞起源、基因组和表观遗传异常、分子改变、化疗耐药和治疗等方面的研究进展进行综述。
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引用次数: 55
The Complex Clinical and Genetic Landscape of Hereditary Peripheral Neuropathy. 遗传性周围神经病变的复杂临床和遗传景观。
IF 36.2 1区 医学 Q1 PATHOLOGY Pub Date : 2021-01-24 DOI: 10.1146/annurev-pathol-030320-100822
Soumitra Ghosh, Warren G Tourtellotte

Hereditary peripheral neuropathy (HPN) is a complex group of neurological disorders caused by mutations in genes expressed by neurons and Schwann cells. The inheritance of a single mutation or multiple mutations in several genes leads to disease phenotype. Patients exhibit symptoms during development, at an early age or later in adulthood. Most of the mechanistic understanding about these neuropathies comes from animal models and histopathological analyses of postmortem human tissues. Diagnosis is often very complex due to the heterogeneity and overlap in symptoms and the frequent overlap between various genes and different mutations they possess. Some symptoms in HPN are common through different subtypes such as axonal degeneration, demyelination, and loss of motor and sensory neurons, leading to similar physiologic abnormalities. Recent advances in gene-targeted therapies, genetic engineering, and next-generation sequencing have augmented our understanding of the underlying pathogenetic mechanisms of HPN.

遗传性周围神经病变(HPN)是一组复杂的神经系统疾病,由神经元和雪旺细胞表达的基因突变引起。单个突变或多个基因突变的遗传导致疾病表型。患者在发育过程中、早期或成年后期表现出症状。大多数关于这些神经病变的机制理解来自动物模型和死后人体组织的组织病理学分析。由于症状的异质性和重叠,以及各种基因和它们所具有的不同突变之间的频繁重叠,诊断往往非常复杂。HPN的一些症状在不同亚型中是常见的,如轴突变性、脱髓鞘、运动和感觉神经元的丧失,导致类似的生理异常。基因靶向治疗、基因工程和下一代测序的最新进展增强了我们对HPN潜在发病机制的理解。
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引用次数: 2
期刊
Annual Review of Pathology-Mechanisms of Disease
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