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Urinary exosomes: Diagnostic impact with a bioinformatic approach. 尿外泌体:生物信息学方法对诊断的影响。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2022-11-08 DOI: 10.1016/bs.acc.2022.07.002
Luis Perpetuo, Rita Ferreira, Visith Thongboonkerd, Sofia Guedes, Francisco Amado, Rui Vitorino

Exosomes are tiny membrane-enveloped vesicles of endosomal origin, typically 40-120nm in diameter, produced by most cells in both normal and pathological situations. These exosomes can be isolated from all biofluids, including urine. In this context, many researchers have focused on the analysis of urinary exosomes because urine can be collected in large quantities, regularly, and with minimal effort. Exosomes contain phospholipids, cholesterol, proteins, glycoconjugates, nucleic acids, and metabolites. Because all organs and tissues produce exosomes, their molecular cargo can provide first-hand information about the physiological and biological state of the site of origin. Many potential disease biomarker candidates have already been identified in urinary exosomes. In this chapter, we performed a bibliometric analysis of the keywords "exosome(s)" and "urine" to identify related terms, diseases and molecular/biological processes, and other related terms. This yielded interesting results suggesting that exosomes in urine may play a role in the pathogenesis of various diseases. Moreover, this chapter discusses exosomes isolation and characterization methodologies and highlight the importance of urinary exosomes and their role in the diagnosis, prognosis and therapy of various diseases. We offer a bibliometric approach and an in-depth analysis on several exosomes' isolation techniques, diagnostic potential for urogenital and specific non-urogenital diseases, as well as an overview of miRNAs significance on urinary exosomes, conferring a more complete status to this review, something that was still lacking in the current literature.

外泌体是内体起源的微小膜包裹囊泡,直径通常为40-120nm,在正常和病理情况下大多数细胞都产生。这些外泌体可以从包括尿液在内的所有生物体液中分离出来。在这种情况下,许多研究人员都把重点放在尿外泌体的分析上,因为尿液可以大量、有规律地收集,而且花费很少。外泌体含有磷脂、胆固醇、蛋白质、糖缀合物、核酸和代谢物。由于所有器官和组织都会产生外泌体,它们的分子货物可以提供有关起源部位生理和生物状态的第一手信息。在尿外泌体中已经发现了许多潜在的疾病生物标志物候选者。在本章中,我们对关键词“外泌体”和“尿液”进行了文献计量学分析,以识别相关术语、疾病和分子/生物过程以及其他相关术语。这产生了有趣的结果,表明尿液中的外泌体可能在各种疾病的发病机制中发挥作用。此外,本章还讨论了外泌体的分离和表征方法,并强调了尿外泌体的重要性及其在各种疾病的诊断、预后和治疗中的作用。我们提供了文献计量学方法,深入分析了几种外泌体的分离技术,泌尿生殖系统和特定非泌尿生殖系统疾病的诊断潜力,以及概述了mirna在泌尿外泌体中的意义,使本综述具有更完整的地位,这是目前文献中仍然缺乏的。
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引用次数: 3
Preface. 前言。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 DOI: 10.1016/S0065-2423(22)00008-7
Gregory S Makowski
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引用次数: 0
Myostatin: Basic biology to clinical application. 肌肉生长抑制素:从生物学基础到临床应用。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2021-11-17 DOI: 10.1016/bs.acc.2021.09.006
Pasquale Esposito, Daniela Picciotto, Yuri Battaglia, Francesca Costigliolo, Francesca Viazzi, Daniela Verzola

Myostatin is a member of the transforming growth factor (TGF)-β superfamily. It is expressed by animal and human skeletal muscle cells where it limits muscle growth and promotes protein breakdown. Its effects are influenced by complex mechanisms including transcriptional and epigenetic regulation and modulation by extracellular binding proteins. Due to its actions in promoting muscle atrophy and cachexia, myostatin has been investigated as a promising therapeutic target to counteract muscle mass loss in experimental models and patients affected by different muscle-wasting conditions. Moreover, growing evidence indicates that myostatin, beyond to regulate skeletal muscle growth, may have a role in many physiologic and pathologic processes, such as obesity, insulin resistance, cardiovascular and chronic kidney disease. In this chapter, we review myostatin biology, including intracellular and extracellular regulatory pathways, and the role of myostatin in modulating physiologic processes, such as muscle growth and aging. Moreover, we discuss the most relevant experimental and clinical evidence supporting the extra-muscle effects of myostatin. Finally, we consider the main strategies developed and tested to inhibit myostatin in clinical trials and discuss the limits and future perspectives of the research on myostatin.

肌生长抑制素是转化生长因子(TGF)-β超家族的一员。它在动物和人类骨骼肌细胞中表达,在那里它限制肌肉生长并促进蛋白质分解。其作用受到复杂机制的影响,包括转录和表观遗传调控以及细胞外结合蛋白的调节。由于其促进肌肉萎缩和恶病质的作用,肌生长抑制素已被研究为一种有希望的治疗靶点,以抵消肌肉质量损失的实验模型和不同肌肉萎缩情况的患者。此外,越来越多的证据表明,肌生长抑制素除了调节骨骼肌生长外,还可能在许多生理和病理过程中发挥作用,如肥胖、胰岛素抵抗、心血管疾病和慢性肾脏疾病。在本章中,我们回顾了肌肉生长抑制素生物学,包括细胞内和细胞外调节途径,以及肌肉生长抑制素在调节生理过程中的作用,如肌肉生长和衰老。此外,我们讨论了最相关的实验和临床证据,支持肌肉生长抑制素的肌肉外作用。最后,我们考虑了在临床试验中开发和测试的抑制肌肉生长抑制素的主要策略,并讨论了肌肉生长抑制素研究的局限性和未来前景。
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引用次数: 13
Exosomes as diagnostic tools. 外泌体作为诊断工具。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2022-08-31 DOI: 10.1016/bs.acc.2022.06.004
Shweta Gupta, P B Mazumder

Exosomes have evolved into novel candidates as diagnostic tools due to their composition of proteins and nucleic acids and ability to cross hypoxic regions, the systemic circulation and blood vessel barriers. Exosomes are nano-sized extracellular vesicles that contain information from their source cells and are found in almost all body fluids. In this chapter, we have focused on basic biogenesis, contents, and functions of these unique particles, and provide a comprehensive discussion on their usefulness as novel diagnostic tools in various diseases. In addition, these unique features make them potential candidates for development of advanced therapeutics and monitoring thereof.

外泌体由于其蛋白质和核酸的组成以及穿越缺氧区、体循环和血管屏障的能力,已经发展成为新的候选诊断工具。外泌体是纳米级的细胞外囊泡,包含来自其源细胞的信息,几乎存在于所有体液中。在本章中,我们重点介绍了这些独特颗粒的基本生物发生,内容和功能,并全面讨论了它们作为各种疾病的新诊断工具的用途。此外,这些独特的特征使它们成为开发先进疗法及其监测的潜在候选者。
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引用次数: 2
Advances in quantum dots as diagnostic tools. 量子点作为诊断工具的进展。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2021-08-27 DOI: 10.1016/bs.acc.2021.07.001
Ana Soldado, Laura Cid Barrio, María Díaz-Gonzalez, Alfredo de la Escosura-Muñiz, Jose Manuel Costa-Fernandez

Quantum dots (QDs) are crystalline inorganic semiconductor nanoparticles a few nanometers in size that possess unique optical electronic properties vs those of larger materials. For example, QDs usually exhibit a strong and long-lived photoluminescence emission, a feature dependent on size, shape and composition. These special optoelectronic properties make them a promising alternative to conventional luminescent dyes as optical labels in biomedical applications including biomarker quantification, biomolecule targeting and molecular imaging. A key parameter for use of QDs is to functionalize their surface with suitable (bio)molecules to provide stability in aqueous solutions and efficient and selective tagging biomolecules of interest. Researchers have successfully developed biocompatible QDs and have linked them to various biomolecule recognition elements, i.e., antibodies, proteins, DNA, etc. In this chapter, QD synthesis and characterization strategies are reviewed as well as the development of nanoplatforms for luminescent biosensing and imaging-guided targeting. Relevant biomedical applications are highlighted with a particular focus on recent progress in ultrasensitive detection of clinical biomarkers. Finally, key future research goals to functionalize QDs as diagnostic tools are explored.

量子点(QDs)是几纳米大小的晶体无机半导体纳米粒子,与较大的材料相比,具有独特的光学电子特性。例如,量子点通常表现出强而长寿命的光致发光发射,这一特征取决于尺寸、形状和成分。这些特殊的光电特性使它们成为传统发光染料在生物医学应用中作为光学标记的有希望的替代品,包括生物标志物定量,生物分子靶向和分子成像。使用量子点的一个关键参数是用合适的(生物)分子功能化它们的表面,以提供水溶液中的稳定性和有效和选择性的标记感兴趣的生物分子。研究人员已经成功地开发了生物相容性量子点,并将它们与各种生物分子识别元件(即抗体、蛋白质、DNA等)联系起来。在这一章中,综述了量子点的合成和表征策略,以及用于发光生物传感和成像引导靶向的纳米平台的发展。相关的生物医学应用被强调,特别关注临床生物标志物超灵敏检测的最新进展。最后,展望了将量子点功能化为诊断工具的未来研究目标。
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引用次数: 3
Preface. 前言。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 DOI: 10.1016/S0065-2423(22)00019-1
Gregory S Makowski
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引用次数: 0
Molecular and cellular functions of long non-coding RNAs in prostate and breast cancer. 长链非编码rna在前列腺癌和乳腺癌中的分子和细胞功能。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2021-12-06 DOI: 10.1016/bs.acc.2021.09.005
Yuan-Shan Zhu, Jifeng Zhu

Long noncoding RNAs (lncRNAs) are defined as noncoding RNA transcripts with a length greater than 200 nucleotides. Research over the last decade has made great strides in our understanding of lncRNAs, especially in the biology of their role in cancer. In this article, we will briefly discuss the biogenesis and characteristics of lncRNAs, then review their molecular and cellular functions in cancer by using prostate and breast cancer as examples. LncRNAs are abundant, diverse, and evolutionarily, less conserved than protein-coding genes. They are often expressed in a tumor and cell-specific manner. As a key epigenetic factor, lncRNAs can use a wide variety of molecular mechanisms to regulate gene expression at each step of the genetic information flow pathway. LncRNAs display widespread effects on cell behavior, tumor growth, and metastasis. They act intracellularly and extracellularly in an autocrine, paracrine and endocrine fashion. Increased understanding of lncRNA's role in cancer has facilitated the development of novel biomarkers for cancer diagnosis, led to greater understanding of cancer prognosis, enabled better prediction of therapeutic responses, and promoted identification of potential targets for cancer therapy.

长链非编码RNA (Long noncoding RNA, lncRNAs)是指长度大于200个核苷酸的非编码RNA转录本。过去十年的研究在我们对lncrna的理解方面取得了巨大的进步,特别是在它们在癌症中的生物学作用方面。在本文中,我们将简要讨论lncrna的生物学发生和特点,并以前列腺癌和乳腺癌为例,综述其在癌症中的分子和细胞功能。lncrna丰富多样,在进化上不如蛋白质编码基因保守。它们通常以肿瘤和细胞特异性的方式表达。lncRNAs作为一种关键的表观遗传因子,可以通过多种分子机制在遗传信息流通路的每一步调控基因表达。LncRNAs对细胞行为、肿瘤生长和转移具有广泛的影响。它们以自分泌、旁分泌和内分泌的方式作用于细胞内和细胞外。对lncRNA在癌症中的作用的进一步了解,促进了新型癌症诊断生物标志物的开发,加深了对癌症预后的了解,更好地预测了治疗反应,并促进了癌症治疗潜在靶点的确定。
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引用次数: 5
Copyright 版权
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 DOI: 10.1016/s0065-2423(22)00005-1
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引用次数: 0
Long non-coding RNA in Non-alcoholic fatty liver disease. 长链非编码RNA与非酒精性脂肪肝的关系。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2022-08-31 DOI: 10.1016/bs.acc.2022.06.001
Sumati Rohilla, Savneet Kaur, Rekha Puria

Nonalcoholic fatty liver disease (NAFLD) is a chronic disease of worldwide impact. The disease process begins with steatosis, i.e., fat accumulation in the liver, and proceeds to nonalcoholic steatohepatitis (NASH). Liver biopsy is the gold standard for NASH diagnosis, but the procedure is invasive, expensive, error prone and poses considerable risk. Unfortunately, there are currently no precise FDA-approved therapies for NAFLD, the only options being lifestyle change and symptomatic treatment. Recently, much research has focused on the identification of molecular mechanisms that could be translated into novel diagnostics and therapeutics. With the advent of high throughput genomics and transcriptomics, noncoding RNAs, including long non-coding RNAs (lncRNAs) have been identified as key players of NAFLD pathogenesis and have accordingly attracted much attention as potential diagnostics and therapeutics. In this chapter, we reviewed various lncRNAs and their functions at different stages of NAFLD. We also highlighted how these unique molecules can be developed as stage-specific non-invasive diagnostic biomarkers for NAFLD.

非酒精性脂肪肝(NAFLD)是一种世界性的慢性疾病。疾病过程开始于脂肪变性,即脂肪在肝脏中积聚,并发展为非酒精性脂肪性肝炎(NASH)。肝活检是NASH诊断的金标准,但该手术具有侵入性、昂贵、容易出错且风险相当大。不幸的是,目前没有fda批准的治疗NAFLD的精确方法,唯一的选择是改变生活方式和对症治疗。最近,许多研究都集中在鉴定分子机制上,这些机制可以转化为新的诊断和治疗方法。随着高通量基因组学和转录组学的出现,包括长链非编码rna (lncRNAs)在内的非编码rna已被确定为NAFLD发病机制的关键因素,因此作为潜在的诊断和治疗手段受到了广泛关注。在本章中,我们综述了各种lncrna及其在NAFLD不同阶段的功能。我们还强调了如何将这些独特的分子开发为NAFLD的分期特异性非侵入性诊断生物标志物。
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引用次数: 2
Amino acids in inflammatory bowel diseases: Modern diagnostic tools and methodologies. 炎症性肠病中的氨基酸:现代诊断工具和方法。
2区 医学 Q1 Chemistry Pub Date : 2022-01-01 Epub Date: 2021-09-27 DOI: 10.1016/bs.acc.2021.07.003
Juraj Piestansky, Dominika Olesova, Michaela Matuskova, Ivana Cizmarova, Petra Chalova, Jaroslav Galba, Petra Majerova, Peter Mikus, Andrej Kovac

Amino acids are crucial building blocks of living organisms. Together with their derivatives, they participate in many intracellular processes to act as hormones, neuromodulators, and neurotransmitters. For several decades amino acids have been studied for their potential as markers of various diseases, including inflammatory bowel diseases. Subsequent improvements in sample pretreatment, separation, and detection methods have enabled the specific and very sensitive determination of these molecules in multicomponent matrices-biological fluids and tissues. The information obtained from targeted amino acid analysis (biomarker-based analytical strategy) can be further used for early diagnostics, to monitor the course of the disease or compliance of the patients. This review will provide an insight into current knowledge about inflammatory bowel diseases, the role of proteinogenic amino acids in intestinal inflammation and modern analytical techniques used in its diagnosis and disease activity monitoring. Current advances in the analysis of amino acids focused on sample pretreatment, separation strategy, or detection methods are highlighted, and their potential in clinical laboratories is discussed. In addition, the latest clinical data obtained from the metabolomic profiling of patients suffering from inflammatory bowel diseases are summarized with a focus on proteinogenic amino acids.

氨基酸是生物体的重要组成部分。与它们的衍生物一起,它们作为激素、神经调节剂和神经递质参与许多细胞内过程。几十年来,人们一直在研究氨基酸作为各种疾病的潜在标志物,包括炎症性肠病。随后在样品预处理、分离和检测方法方面的改进使得在多组分基质(生物流体和组织)中对这些分子进行特异性和非常敏感的测定成为可能。从靶向氨基酸分析(基于生物标志物的分析策略)获得的信息可进一步用于早期诊断,以监测疾病的进程或患者的依从性。本文综述了目前关于炎症性肠病的知识,蛋白质原性氨基酸在肠道炎症中的作用以及用于其诊断和疾病活动监测的现代分析技术。当前氨基酸分析的进展主要集中在样品预处理、分离策略或检测方法上,并讨论了它们在临床实验室中的潜力。此外,从炎症性肠病患者的代谢组学分析中获得的最新临床数据进行了总结,重点是蛋白质原氨基酸。
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引用次数: 2
期刊
Advances in Clinical Chemistry
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