Pub Date : 2024-06-20DOI: 10.1007/s10344-024-01816-0
Chris R. Shepherd, Vincent Nijman, S. Sunny Nelson, Boyd T. C. Leupen, Simon Bruslund
The very large demand for songbirds in Indonesia undermines the efforts of the Government of Indonesia to regulate and control harvest and trade. As more species become increasingly rare, new species are sought after and included in the trade to supply demand from hobbyists, traders and songbird competition participants. One such group of species is the butcherbirds. Four species of butcherbirds are native to Indonesia and prior to 2016 these birds were hardly found in trade. Since then, the trade has grown rapidly and during 57 surveys of bird markets in 12 cities on Java, Bali and Lombok, we recorded 235 butcherbirds. We found 43 advertisements online offering butcherbirds for sale. The highest numbers were recorded in the easternmost cities we surveyed (Mataram, 11.5 birds/survey; Denpasar 9.0 birds/survey) and we recorded higher numbers of butcherbirds for sale nearer to their natural distribution range. Compared to other species, butcherbirds command high prices (hooded butcherbird: US$185; black butcherbird: US$122). Despite the authorities attempting to regulate the exploitation of butcherbirds with annual harvest and trade quotas (set at zero for 2022), the trade evidently is challenging to control and may pose a threat to the conservation of these species in the wild.
{"title":"A newly emerging trade in New Guinea’s butcherbirds (Cracticinae) in Indonesia","authors":"Chris R. Shepherd, Vincent Nijman, S. Sunny Nelson, Boyd T. C. Leupen, Simon Bruslund","doi":"10.1007/s10344-024-01816-0","DOIUrl":"https://doi.org/10.1007/s10344-024-01816-0","url":null,"abstract":"<p>The very large demand for songbirds in Indonesia undermines the efforts of the Government of Indonesia to regulate and control harvest and trade. As more species become increasingly rare, new species are sought after and included in the trade to supply demand from hobbyists, traders and songbird competition participants. One such group of species is the butcherbirds. Four species of butcherbirds are native to Indonesia and prior to 2016 these birds were hardly found in trade. Since then, the trade has grown rapidly and during 57 surveys of bird markets in 12 cities on Java, Bali and Lombok, we recorded 235 butcherbirds. We found 43 advertisements online offering butcherbirds for sale. The highest numbers were recorded in the easternmost cities we surveyed (Mataram, 11.5 birds/survey; Denpasar 9.0 birds/survey) and we recorded higher numbers of butcherbirds for sale nearer to their natural distribution range. Compared to other species, butcherbirds command high prices (hooded butcherbird: US$185; black butcherbird: US$122). Despite the authorities attempting to regulate the exploitation of butcherbirds with annual harvest and trade quotas (set at zero for 2022), the trade evidently is challenging to control and may pose a threat to the conservation of these species in the wild.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"24 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141532747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-19DOI: 10.1007/s10344-024-01819-x
Kei K Suzuki, Taiki Mori, Hiromi Yamagawa
Populations of large herbivores can be efficiently managed by regulating the number of females, which is directly related to recruitment. This study aims to determine seasonal changes in the attractiveness of salt water to female Sika deer (Cervus nippon) in order to cull females more efficiently. Females drank saltwater well at similar times of the year for saltwater with different installation dates. In particular, the frequency of drinking increased from early April to mid-July. Previous studies have shown that salt water is an effective attractant for capturing females, but the results of this study suggest that females may be captured more effectively in spring and early summer. This is the birthing season for sika deer. Culling females in late pregnancy and lactation may also directly reduce recruitment due to higher mortality of young. Saltwater-induced culling of female sika deer may be an effective method of managing overpopulation of the deer.
{"title":"Seasonal change in attractiveness of salt water on female deer","authors":"Kei K Suzuki, Taiki Mori, Hiromi Yamagawa","doi":"10.1007/s10344-024-01819-x","DOIUrl":"https://doi.org/10.1007/s10344-024-01819-x","url":null,"abstract":"<p>Populations of large herbivores can be efficiently managed by regulating the number of females, which is directly related to recruitment. This study aims to determine seasonal changes in the attractiveness of salt water to female Sika deer (<i>Cervus nippon</i>) in order to cull females more efficiently. Females drank saltwater well at similar times of the year for saltwater with different installation dates. In particular, the frequency of drinking increased from early April to mid-July. Previous studies have shown that salt water is an effective attractant for capturing females, but the results of this study suggest that females may be captured more effectively in spring and early summer. This is the birthing season for sika deer. Culling females in late pregnancy and lactation may also directly reduce recruitment due to higher mortality of young. Saltwater-induced culling of female sika deer may be an effective method of managing overpopulation of the deer.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"65 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141519391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-31DOI: 10.1007/s10344-024-01806-2
Muhammad Rehan, Ammar Hassan, Shah Zeb, Sami Ullah, Faizan Ahmad, Eve Bohnett, Luciano Bosso, Tosif Fida, Muhammad Kabir
Identification and assessment of habitat suitability are essential to the conservation of threatened species such as the Asiatic black bear (Ursus thibetanus) in Pakistan. Regionally, for example, in the Hindu Kush Mountains, there has been growing public concern regarding negative impacts on the bears’ natural habitats due to land use and climate change. Many of the efforts to identify and conserve suitable habitats are based on limited data and have been unable to accurately predict habitat preferences. This study aims to fill this gap by developing predictive models for U. thibetanus based on the integration of new occurrences and climate and land cover data. We installed camera traps in 81 different locations across a gradient of elevation. Over the duration of 413 trap nights, we collected 110 different bear detections at 31 camera stations. The bear favored densely forested regions between 1,835 m and 3,348 m above sea level, with a catch rate of 26.6/100 trap nights. Our models demonstrated high levels of prediction accuracy (AUC > 0.97) and predicted that 43% of the total area would make a good habitat for bears. The mean temperature of coldest quarter, normalized difference vegetation index, and annual mean temperature were the main determinants of habitat suitability. The findings of this study, which is the first to map the current distribution and suitable habitat of the Asiatic black bear in the Hindu Kush Mountain Range, contribute new local-scale habitat suitability data to the study of bears in Swat Valley, Pakistan. Our results may be used to provide important conservation information for U. thibetanus that is useful to policymakers for improving future management planning.
{"title":"Application of species distribution models to estimate and manage the Asiatic black bear (Ursus thibetanus) habitat in the Hindu Kush Mountains, Pakistan","authors":"Muhammad Rehan, Ammar Hassan, Shah Zeb, Sami Ullah, Faizan Ahmad, Eve Bohnett, Luciano Bosso, Tosif Fida, Muhammad Kabir","doi":"10.1007/s10344-024-01806-2","DOIUrl":"https://doi.org/10.1007/s10344-024-01806-2","url":null,"abstract":"<p>Identification and assessment of habitat suitability are essential to the conservation of threatened species such as the Asiatic black bear (<i>Ursus thibetanus</i>) in Pakistan. Regionally, for example, in the Hindu Kush Mountains, there has been growing public concern regarding negative impacts on the bears’ natural habitats due to land use and climate change. Many of the efforts to identify and conserve suitable habitats are based on limited data and have been unable to accurately predict habitat preferences. This study aims to fill this gap by developing predictive models for <i>U. thibetanus</i> based on the integration of new occurrences and climate and land cover data. We installed camera traps in 81 different locations across a gradient of elevation. Over the duration of 413 trap nights, we collected 110 different bear detections at 31 camera stations. The bear favored densely forested regions between 1,835 m and 3,348 m above sea level, with a catch rate of 26.6/100 trap nights. Our models demonstrated high levels of prediction accuracy (AUC > 0.97) and predicted that 43% of the total area would make a good habitat for bears. The mean temperature of coldest quarter, normalized difference vegetation index, and annual mean temperature were the main determinants of habitat suitability. The findings of this study, which is the first to map the current distribution and suitable habitat of the Asiatic black bear in the Hindu Kush Mountain Range, contribute new local-scale habitat suitability data to the study of bears in Swat Valley, Pakistan. Our results may be used to provide important conservation information for <i>U. thibetanus</i> that is useful to policymakers for improving future management planning.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"39 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141197914","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-27DOI: 10.1007/s10344-024-01815-1
Geanina Fănaru, Silviu Petrovan, Raluca I. Băncilă, Miruna G. Vizireanu, Ovidiu Drăgan, Sabina E. Vlad, Laurentiu Rozylowicz, Dan Cogălniceanu
The pond slider (Trachemys scripta) is a major invasive species in freshwater habitats across the world. For decades, the main cause of individuals’ occurrences in the wild was the illegal release of pet animals. Recently, as an important component of their management, there has been an increasing focus on their ability to successfully reproduce in the invaded regions. In Romania, the species is reported as widespread in urban wetland environments within major cities, but information about its nesting and potential breeding remains scarce or anecdotal. We surveyed a large population of pond sliders in an artificial urban wetland site in Constanţa, SE Romania, and described their nesting ecology and reproductive output. Although eggs from several nests failed to hatch or were predated, potentially limiting their reproductive success, sliders were found to breed successfully at this site, with 18.6% viable hatchlings recorded. Our study could serve as a baseline for additional targeted surveys and to inform decision-making for successfully managing this invasive species. Although the importation, trading, and breeding of this species are prohibited by EU legislation, active and effective management is now required to address the successful reproduction and further potential spread of T. scripta.
{"title":"Nesting ecology and confirmed breeding of the invasive pond slider Trachemys scripta in an urban environment, Romania","authors":"Geanina Fănaru, Silviu Petrovan, Raluca I. Băncilă, Miruna G. Vizireanu, Ovidiu Drăgan, Sabina E. Vlad, Laurentiu Rozylowicz, Dan Cogălniceanu","doi":"10.1007/s10344-024-01815-1","DOIUrl":"https://doi.org/10.1007/s10344-024-01815-1","url":null,"abstract":"<p>The pond slider (<i>Trachemys scripta</i>) is a major invasive species in freshwater habitats across the world. For decades, the main cause of individuals’ occurrences in the wild was the illegal release of pet animals. Recently, as an important component of their management, there has been an increasing focus on their ability to successfully reproduce in the invaded regions. In Romania, the species is reported as widespread in urban wetland environments within major cities, but information about its nesting and potential breeding remains scarce or anecdotal. We surveyed a large population of pond sliders in an artificial urban wetland site in Constanţa, SE Romania, and described their nesting ecology and reproductive output. Although eggs from several nests failed to hatch or were predated, potentially limiting their reproductive success, sliders were found to breed successfully at this site, with 18.6% viable hatchlings recorded. Our study could serve as a baseline for additional targeted surveys and to inform decision-making for successfully managing this invasive species. Although the importation, trading, and breeding of this species are prohibited by EU legislation, active and effective management is now required to address the successful reproduction and further potential spread of <i>T. scripta</i>.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"12 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141167486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-25DOI: 10.1007/s10344-024-01814-2
Néstor Martínez-Calabuig, Rosario Panadero, Gonzalo Varas, Susana Remesar, Ceferino M. López, Ana Saldaña, Pablo Díaz, Pablo Díez-Baños, Patrocinio Morrondo, David García-Dios
Infestation by the sheep bot fly Oestrus ovis was firstly reported in a single roe deer from Central Spain in 2022. For assessing the current situation of nasal myiases in this ungulate in this area, the nasopharyngeal cavities of 184 roe deer hunted in Central Spain between January-June 2023 were examined. All larvae were recovered and morphologically identified; in addition, species identification was molecularly confirmed in a subset of specimens. Forty-four roe deer (23.9%; CI 95 17.95–30.74) were positive for different Oestrinae larval stages. Twenty-six animals (14.1%; CI 95 9.44–20.02%) were infested by the roe deer nasal bot fly (Cephenemyia stimulator) with a mean intensity of 35.2 (SD 49.71) larvae/infested animal, and eighteen (9.8%; CI 95 5.90-15.02%) roe deer harboured the sheep bot fly (O. ovis), with a mean intensity of 2.0 (SD 1.33) larvae/infested animal. No mixed infestations by both Oestrinae were found in a single animal. All larval instars (L1, L2 and L3) of both species were identified. Most C. stimulator specimens were located at the nasal turbinates, and a small percentage (3.2%) at the pharynx; all O. ovis larvae were found at the nasal turbinates. Since O. ovis is highly prevalent in sheep and goat flocks from Central Spain, the high sympatry between roe deer and small ruminant populations in the studied area may have increased the risk of cross-infection. Moreover, the finding of mature L3 of O. ovis suggests that this species can complete its life cycle in roe deer. Therefore, monitoring bot flies in sheep and goat flocks as well as in sympatric wild ruminants is strongly recommended for achieving an optimum control of nasal myiases.
{"title":"Prevalence of nasopharyngeal myiasis in roe deer (Capreolus capreolus) from an area with high sympatry between wild and domestic ungulates in Central Spain","authors":"Néstor Martínez-Calabuig, Rosario Panadero, Gonzalo Varas, Susana Remesar, Ceferino M. López, Ana Saldaña, Pablo Díaz, Pablo Díez-Baños, Patrocinio Morrondo, David García-Dios","doi":"10.1007/s10344-024-01814-2","DOIUrl":"https://doi.org/10.1007/s10344-024-01814-2","url":null,"abstract":"<p>Infestation by the sheep bot fly <i>Oestrus ovis</i> was firstly reported in a single roe deer from Central Spain in 2022. For assessing the current situation of nasal myiases in this ungulate in this area, the nasopharyngeal cavities of 184 roe deer hunted in Central Spain between January-June 2023 were examined. All larvae were recovered and morphologically identified; in addition, species identification was molecularly confirmed in a subset of specimens. Forty-four roe deer (23.9%; CI 95 17.95–30.74) were positive for different Oestrinae larval stages. Twenty-six animals (14.1%; CI 95 9.44–20.02%) were infested by the roe deer nasal bot fly (<i>Cephenemyia stimulator</i>) with a mean intensity of 35.2 (SD 49.71) larvae/infested animal, and eighteen (9.8%; CI 95 5.90-15.02%) roe deer harboured the sheep bot fly (<i>O. ovis</i>), with a mean intensity of 2.0 (SD 1.33) larvae/infested animal. No mixed infestations by both Oestrinae were found in a single animal. All larval instars (L1, L2 and L3) of both species were identified. Most <i>C. stimulator</i> specimens were located at the nasal turbinates, and a small percentage (3.2%) at the pharynx; all <i>O. ovis</i> larvae were found at the nasal turbinates. Since <i>O. ovis</i> is highly prevalent in sheep and goat flocks from Central Spain, the high sympatry between roe deer and small ruminant populations in the studied area may have increased the risk of cross-infection. Moreover, the finding of mature L3 of <i>O. ovis</i> suggests that this species can complete its life cycle in roe deer. Therefore, monitoring bot flies in sheep and goat flocks as well as in sympatric wild ruminants is strongly recommended for achieving an optimum control of nasal myiases.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"2015 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141153221","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-18DOI: 10.1007/s10344-024-01795-2
Adriana Rodríguez-Luis, Adolfo Toledano-Díaz, Rosario Velázquez, Antonio López-Sebastián, María Mogedas-Moreno, Julián Santiago-Moreno
Thyroid hormones play a role in the control of seasonal reproduction in wild and domestic ruminants such as red deer and sheep. Horn growth shows an inverse relationship with reproductive activity, but the effect of thyroid function on the regulation of the seasonal pattern of horn growth is unknown. This work examines the seasonal pattern of plasma thyroxine concentration, and its effect on testosterone secretion and seasonal changes in horn growth, in male Iberian ibexes (Capra pyrenaica). Plasma testosterone, plasma thyroxine, and horn growth were measured over a year in four males kept under natural photoperiod conditions. In another four, thyroxine was administered coinciding with the period of physiological reduction in plasma testosterone (January–February). In the first four, seasonal changes in the plasma concentration of thyroxine were detected with the highest concentrations recorded in October, November, and December, coinciding with the greatest testosterone secretion. In the second four, thyroxine treatment affected neither plasma testosterone concentration nor horn growth. The plasma concentrations of testosterone and thyroxine appear to be closely related in the ibex, but the seasonal pattern of horn growth does not seem to be modulated by seasonal changes in thyroxine.
{"title":"Thyroxine administration at the end of the rutting season does not affect testosterone secretion or horn growth in the Iberian ibex (Capra pyrenaica)","authors":"Adriana Rodríguez-Luis, Adolfo Toledano-Díaz, Rosario Velázquez, Antonio López-Sebastián, María Mogedas-Moreno, Julián Santiago-Moreno","doi":"10.1007/s10344-024-01795-2","DOIUrl":"https://doi.org/10.1007/s10344-024-01795-2","url":null,"abstract":"<p>Thyroid hormones play a role in the control of seasonal reproduction in wild and domestic ruminants such as red deer and sheep. Horn growth shows an inverse relationship with reproductive activity, but the effect of thyroid function on the regulation of the seasonal pattern of horn growth is unknown. This work examines the seasonal pattern of plasma thyroxine concentration, and its effect on testosterone secretion and seasonal changes in horn growth, in male Iberian ibexes (<i>Capra pyrenaica</i>). Plasma testosterone, plasma thyroxine, and horn growth were measured over a year in four males kept under natural photoperiod conditions. In another four, thyroxine was administered coinciding with the period of physiological reduction in plasma testosterone (January–February). In the first four, seasonal changes in the plasma concentration of thyroxine were detected with the highest concentrations recorded in October, November, and December, coinciding with the greatest testosterone secretion. In the second four, thyroxine treatment affected neither plasma testosterone concentration nor horn growth. The plasma concentrations of testosterone and thyroxine appear to be closely related in the ibex, but the seasonal pattern of horn growth does not seem to be modulated by seasonal changes in thyroxine.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"25 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141059151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-11DOI: 10.1007/s10344-024-01808-0
Alexander Kopatz, Anita J. Norman, Göran Spong, Mia Valtonen, Ilpo Kojola, Jouni Aspi, Jonas Kindberg, Øystein Flagstad, Oddmund Kleven
Harmonising methodology between countries is crucial in transborder population monitoring. However, immediate application of alleged, established DNA-based methods across the extended area can entail drawbacks and may lead to biases. Therefore, genetic methods need to be tested across the whole area before being deployed. Around 4,500 brown bears (Ursus arctos) live in Norway, Sweden, and Finland and they are divided into the western (Scandinavian) and eastern (Karelian) population. Both populations have recovered and are connected via asymmetric migration. DNA-based population monitoring in Norway and Sweden uses the same set of genetic markers. With Finland aiming to implement monitoring, we tested the available SNP-panel developed to assess brown bears in Norway and Sweden, on tissue samples from a representative set of 93 legally harvested individuals from Finland. The aim was to test for ascertainment bias and evaluate its suitability for DNA-based transnational-monitoring covering all three countries. We compared results to the performance of microsatellite genotypes of the same individuals in Finland and against SNP-genotypes from individuals sampled in Sweden (N = 95) and Norway (N = 27). In Finland, a higher resolution for individual identification was obtained for SNPs (PI = 1.18E-27) compared to microsatellites (PI = 4.2E-11). Compared to Norway and Sweden, probability of identity of the SNP-panel was slightly higher and expected heterozygosity lower in Finland indicating ascertainment bias. Yet, our evaluation show that the available SNP-panel outperforms the microsatellite panel currently applied in Norway and Sweden. The SNP-panel represents a powerful tool that could aid improving transnational DNA-based monitoring of brown bears across these three countries.
在跨境种群监测中,各国统一方法至关重要。然而,在扩展区域内立即应用所谓的、成熟的基于 DNA 的方法可能会带来缺陷,并可能导致偏差。因此,在部署基因方法之前,需要在整个地区进行测试。约有 4500 头棕熊(Ursus arctos)生活在挪威、瑞典和芬兰,分为西部(斯堪的纳维亚)和东部(卡累利阿)棕熊种群。这两个种群都已恢复,并通过非对称迁徙连接在一起。挪威和瑞典基于DNA的种群监测使用同一套遗传标记。由于芬兰正准备实施监测,我们在芬兰具有代表性的93头合法捕获个体的组织样本上测试了为评估挪威和瑞典棕熊而开发的现有SNP面板。目的是测试确定偏差,并评估其是否适合基于 DNA 的跨国监测,监测范围涵盖所有三个国家。我们将结果与芬兰相同个体的微卫星基因型以及瑞典(95 个)和挪威(27 个)采样个体的 SNP 基因型进行了比较。在芬兰,与微卫星(PI = 4.2E-11)相比,SNP(PI = 1.18E-27)的个体识别分辨率更高。与挪威和瑞典相比,芬兰的 SNP 面板识别概率略高,预期杂合度较低,这表明存在确定偏差。然而,我们的评估结果表明,现有的 SNP 面板优于挪威和瑞典目前使用的微卫星面板。SNP面板是一个强大的工具,有助于改善这三个国家基于DNA的棕熊跨国监测。
{"title":"Expanding the spatial scale in DNA-based monitoring schemes: ascertainment bias in transnational assessments","authors":"Alexander Kopatz, Anita J. Norman, Göran Spong, Mia Valtonen, Ilpo Kojola, Jouni Aspi, Jonas Kindberg, Øystein Flagstad, Oddmund Kleven","doi":"10.1007/s10344-024-01808-0","DOIUrl":"https://doi.org/10.1007/s10344-024-01808-0","url":null,"abstract":"<p>Harmonising methodology between countries is crucial in transborder population monitoring. However, immediate application of alleged, established DNA-based methods across the extended area can entail drawbacks and may lead to biases. Therefore, genetic methods need to be tested across the whole area before being deployed. Around 4,500 brown bears (<i>Ursus arctos</i>) live in Norway, Sweden, and Finland and they are divided into the western (Scandinavian) and eastern (Karelian) population. Both populations have recovered and are connected via asymmetric migration. DNA-based population monitoring in Norway and Sweden uses the same set of genetic markers. With Finland aiming to implement monitoring, we tested the available SNP-panel developed to assess brown bears in Norway and Sweden, on tissue samples from a representative set of 93 legally harvested individuals from Finland. The aim was to test for ascertainment bias and evaluate its suitability for DNA-based transnational-monitoring covering all three countries. We compared results to the performance of microsatellite genotypes of the same individuals in Finland and against SNP-genotypes from individuals sampled in Sweden (<i>N</i> = 95) and Norway (<i>N</i> = 27). In Finland, a higher resolution for individual identification was obtained for SNPs (PI = 1.18E-27) compared to microsatellites (PI = 4.2E-11). Compared to Norway and Sweden, probability of identity of the SNP-panel was slightly higher and expected heterozygosity lower in Finland indicating ascertainment bias. Yet, our evaluation show that the available SNP-panel outperforms the microsatellite panel currently applied in Norway and Sweden. The SNP-panel represents a powerful tool that could aid improving transnational DNA-based monitoring of brown bears across these three countries.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"122 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140931725","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-11DOI: 10.1007/s10344-024-01807-1
Uta Simon, K Gerhards, S Becker, H Willems, V Friedrichs, JH Forth, S Calvelage, S Blome, Gerald Reiner
In the European Union, African swine fever (ASF) affects wild boar (Sus scrofa) populations in several Member States. Knowledge of population connectivity is important for the implementation of control measures, in particular the establishment of effective barriers. Population genetic comparisons of neighbouring populations can be very helpful in this respect. The present study investigated the genetic differentiation of wild boar in eastern Germany. This region has been affected by ASF since September 2020. A total of 1,262 wild boars from 31 hunting grounds (populations) in ASF-affected and ASF-free districts were sampled over a total area of almost 100,000 km². The study area encompassed a network of geographical factors that promote (roads, rivers, cities) or inhibit (natural areas, habitat corridors) genetic differentiation between wild boar populations. The genetic differentiation of the areas was based on 12 microsatellite markers. Three different Bayesian algorithms were used to analyse the data. The results were combined into a common approach with 9 clusters. Based on the cluster distribution in each population, the connectivity between the areas was quantified. The strongest differentiation was found along an imaginary line along the lower Elbe valley through Berlin and the A11 freeway to the Szczecin Lagoon. In contrast, the Mecklenburg Lake District and the south-east of the study area showed strong connectivity between areas. The special features of the landscapes along the lower Elbe valley, which was assessed as highly connective, and the high barrier effect of the A11 freeway in contrast to the other freeways in the study area show that barrier effects cannot be generalised in principle, but are actually determined by the circumstances of individual structures. The results of the connectivity analysis were compared with the distribution of viral lineages and variants. The genotypes of the wild boar populations and the ASFV lineages and variants showed a good explanatory approach for the observed disease dynamics in the study area. The newly gained knowledge on barriers and regionally different connectivity between wild boar populations can support considerations and measures for the containment of ASF in the affected areas by improving the understanding of wild boar dispersal dynamics.
{"title":"Genetic differentiation of wild boar populations in a region affected by African swine fever","authors":"Uta Simon, K Gerhards, S Becker, H Willems, V Friedrichs, JH Forth, S Calvelage, S Blome, Gerald Reiner","doi":"10.1007/s10344-024-01807-1","DOIUrl":"https://doi.org/10.1007/s10344-024-01807-1","url":null,"abstract":"<p>In the European Union, African swine fever (ASF) affects wild boar (<i>Sus scrofa</i>) populations in several Member States. Knowledge of population connectivity is important for the implementation of control measures, in particular the establishment of effective barriers. Population genetic comparisons of neighbouring populations can be very helpful in this respect. The present study investigated the genetic differentiation of wild boar in eastern Germany. This region has been affected by ASF since September 2020. A total of 1,262 wild boars from 31 hunting grounds (populations) in ASF-affected and ASF-free districts were sampled over a total area of almost 100,000 km². The study area encompassed a network of geographical factors that promote (roads, rivers, cities) or inhibit (natural areas, habitat corridors) genetic differentiation between wild boar populations. The genetic differentiation of the areas was based on 12 microsatellite markers. Three different Bayesian algorithms were used to analyse the data. The results were combined into a common approach with 9 clusters. Based on the cluster distribution in each population, the connectivity between the areas was quantified. The strongest differentiation was found along an imaginary line along the lower Elbe valley through Berlin and the A11 freeway to the Szczecin Lagoon. In contrast, the Mecklenburg Lake District and the south-east of the study area showed strong connectivity between areas. The special features of the landscapes along the lower Elbe valley, which was assessed as highly connective, and the high barrier effect of the A11 freeway in contrast to the other freeways in the study area show that barrier effects cannot be generalised in principle, but are actually determined by the circumstances of individual structures. The results of the connectivity analysis were compared with the distribution of viral lineages and variants. The genotypes of the wild boar populations and the ASFV lineages and variants showed a good explanatory approach for the observed disease dynamics in the study area. The newly gained knowledge on barriers and regionally different connectivity between wild boar populations can support considerations and measures for the containment of ASF in the affected areas by improving the understanding of wild boar dispersal dynamics.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"122 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140941791","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-09DOI: 10.1007/s10344-024-01804-4
Kristina Vogt, Tobias Roth, Sven Signer, Christian Simon Willisch, Valentin Amrhein
An increasing number of GPS telemetry studies have helped to gain important insights into predator-prey relationships in recent years. However, considerable time and effort is needed to evaluate whether GPS location clusters (GLCs) reflect predation events. To reduce field effort, predictive models are being developed to calculate predator kill intervals, but few studies have attempted to do this for a specific species of prey. Between 2013 and 2018, we studied predation by 13 GPS-collared Eurasian lynx (Lynx lynx) on Alpine chamois (Rupicapra rupicapra) in the northwestern Swiss Alps. Our objectives were to predict the total number of killed chamois, including potential kills in unchecked GLCs, and to evaluate if model predictions were sufficiently accurate. We built a set of generalized linear models (GLM) predicting the occurrence of GLCs containing lynx-killed chamois (1) versus GLCs containing other prey types or no prey (0) and compared their predictive performance by means of k-fold cross-validation. We found that model performance was very similar for all candidate models, with the full model yielding the best cross-validation result (accuracy = 0.83, sensitivity = 0.43, specificity = 0.94). Female lynx killed on average one chamois every 11.9 days (10.6–13.0 days, 95% CI); male lynx killed one chamois every 7.2 days (6.7–7.6 days, 95% CI). Our model showed high specificity for detecting non-chamois GLCs, but sensitivity for detection of GLCs with actual chamois kills was low. We conclude that the sensitivity of the models should be further improved, but the results can be sufficient for practical application. Predictive modelling approaches do not replace extensive fieldwork but require large sets of field data, high individual variability and thorough knowledge of a predator’s ecology and prey community. Our approach may provide useful results for binary classifications in rather simple predator-prey systems, but extrapolations from one study system to another might be difficult.
{"title":"Estimating kill intervals for a specific prey species using location clusters from GPS-collared Eurasian lynx (Lynx lynx)","authors":"Kristina Vogt, Tobias Roth, Sven Signer, Christian Simon Willisch, Valentin Amrhein","doi":"10.1007/s10344-024-01804-4","DOIUrl":"https://doi.org/10.1007/s10344-024-01804-4","url":null,"abstract":"<p>An increasing number of GPS telemetry studies have helped to gain important insights into predator-prey relationships in recent years. However, considerable time and effort is needed to evaluate whether GPS location clusters (GLCs) reflect predation events. To reduce field effort, predictive models are being developed to calculate predator kill intervals, but few studies have attempted to do this for a specific species of prey. Between 2013 and 2018, we studied predation by 13 GPS-collared Eurasian lynx (<i>Lynx lynx</i>) on Alpine chamois (<i>Rupicapra rupicapra</i>) in the northwestern Swiss Alps. Our objectives were to predict the total number of killed chamois, including potential kills in unchecked GLCs, and to evaluate if model predictions were sufficiently accurate. We built a set of generalized linear models (GLM) predicting the occurrence of GLCs containing lynx-killed chamois (1) versus GLCs containing other prey types or no prey (0) and compared their predictive performance by means of k-fold cross-validation. We found that model performance was very similar for all candidate models, with the full model yielding the best cross-validation result (accuracy = 0.83, sensitivity = 0.43, specificity = 0.94). Female lynx killed on average one chamois every 11.9 days (10.6–13.0 days, 95% CI); male lynx killed one chamois every 7.2 days (6.7–7.6 days, 95% CI). Our model showed high specificity for detecting non-chamois GLCs, but sensitivity for detection of GLCs with actual chamois kills was low. We conclude that the sensitivity of the models should be further improved, but the results can be sufficient for practical application. Predictive modelling approaches do not replace extensive fieldwork but require large sets of field data, high individual variability and thorough knowledge of a predator’s ecology and prey community. Our approach may provide useful results for binary classifications in rather simple predator-prey systems, but extrapolations from one study system to another might be difficult.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"159 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140935353","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-09DOI: 10.1007/s10344-024-01809-z
Russell J. Gray, Tan Van Nguyen, Long Nhat Cao, Mai Thi Trinh, Thong Van Pham, Huyen Thi Thanh Nguyen, Daniel Willcox, Dzung Van Le, Thai Van Nguyen
The U Minh wetlands of southern Vietnam in Ca Mau and Kieng Giang provinces are a degraded, peat-swamp wetland mosaic known to retain several globally threatened species. We deployed 83 targeted camera-traps across U Minh Thuong National Park and U Minh Ha National Park from December 2019 to May 2020, and from November 2020 to June 2021, respectively. Our aim was to detect threatened otters, wild cats, and pangolins in each protected area, to identify relative abundance, activity patterns, and what potential threats they may face to inform conservation priorities for park managers. Our results showed that both protected areas harbour significant regionally important populations of globally threatened Sunda pangolins (Manis javanica), and Hairy-nosed otters (Lutra sumatrana). However, Fishing cats (Prionailurus viverrinus) and Large-spotted civet (Viverra megaspila) previously recorded from U Minh Thuong National Park, were not observed, emphasising the probability of local extirpation. Other than wide-ranging species that are less sensitive to human disturbance (i.e., Common palm civets and Leopard cats), all small carnivores were most active in Melaleuca and swamp/Melaleuca habitats in U Minh Thuong, and both the wetland plantations and disturbed forests of U Minh Ha according to their photographic rates. Human and domestic dogs’ activity periods in both protected areas overlapped strongly with Hairy-nosed otters, which could influence their dispersal abilities and access to resources. Long-term and short-term threats are discussed with relevance to U Minh ecosystem health and future recommendations.
{"title":"Camera trapping in Southern Vietnam: unveiling relative abundance, activity patterns, and conservation challenges of globally threatened pangolins and small carnivores","authors":"Russell J. Gray, Tan Van Nguyen, Long Nhat Cao, Mai Thi Trinh, Thong Van Pham, Huyen Thi Thanh Nguyen, Daniel Willcox, Dzung Van Le, Thai Van Nguyen","doi":"10.1007/s10344-024-01809-z","DOIUrl":"https://doi.org/10.1007/s10344-024-01809-z","url":null,"abstract":"<p>The U Minh wetlands of southern Vietnam in Ca Mau and Kieng Giang provinces are a degraded, peat-swamp wetland mosaic known to retain several globally threatened species. We deployed 83 targeted camera-traps across U Minh Thuong National Park and U Minh Ha National Park from December 2019 to May 2020, and from November 2020 to June 2021, respectively. Our aim was to detect threatened otters, wild cats, and pangolins in each protected area, to identify relative abundance, activity patterns, and what potential threats they may face to inform conservation priorities for park managers. Our results showed that both protected areas harbour significant regionally important populations of globally threatened Sunda pangolins (<i>Manis javanica</i>), and Hairy-nosed otters (<i>Lutra sumatrana</i>). However, Fishing cats (<i>Prionailurus viverrinus</i>) and Large-spotted civet (<i>Viverra megaspila</i>) previously recorded from U Minh Thuong National Park, were not observed, emphasising the probability of local extirpation. Other than wide-ranging species that are less sensitive to human disturbance (i.e., Common palm civets and Leopard cats), all small carnivores were most active in <i>Melaleuca</i> and swamp/<i>Melaleuca</i> habitats in U Minh Thuong, and both the wetland plantations and disturbed forests of U Minh Ha according to their photographic rates. Human and domestic dogs’ activity periods in both protected areas overlapped strongly with Hairy-nosed otters, which could influence their dispersal abilities and access to resources. Long-term and short-term threats are discussed with relevance to U Minh ecosystem health and future recommendations.</p>","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"16 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2024-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140931724","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}