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Smooth online parameter estimation for time varying VAR models with application to rat local field potential activity data. 时变VAR模型的平滑在线参数估计及其在大鼠局部场电位活度数据中的应用。
IF 0.3 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 Epub Date: 2023-04-13 DOI: 10.4310/22-sii729
Anass El Yaagoubi Bourakna, Marco Pinto, Norbert Fortin, Hernando Ombao

Multivariate time series data appear often as realizations of non-stationary processes where the covariance matrix or spectral matrix smoothly evolve over time. Most of the current approaches estimate the time-varying spectral properties only retrospectively - that is, after the entire data has been observed. Retrospective estimation is a major limitation in many adaptive control applications where it is important to estimate these properties and detect changes in the system as they happen in real-time. To overcome this limitation, we develop an online estimation procedure that gives a real-time update of the time-varying parameters as new observations arrive. One approach to modeling non-stationary time series is to fit time-varying vector autoregressive models (tv-VAR). However, one major obstacle in online estimation of such models is the computational cost due to the high-dimensionality of the parameters. Existing methods such as the Kalman filter or local least squares are feasible. However, they are not always suitable because they provide noisy estimates and can become prohibitively costly as the dimension of the time series increases. In our brain signal application, it is critical to develop a robust method that can estimate, in real-time, the properties of the underlying stochastic process, in particular, the spectral brain connectivity measures. For these reasons we propose a new smooth online parameter estimation approach (SOPE) that has the ability to control for the smoothness of the estimates with a reasonable computational complexity. Consequently, the models are fit in real-time even for high dimensional time series. We demonstrate that our proposed SOPE approach is as good as the Kalman filter in terms of mean-squared error for small dimensions. However, unlike the Kalman filter, the SOPE has lower computational cost and hence scalable for higher dimensions. Finally, we apply the SOPE method to local field potential activity data from the hippocampus of a rat performing an odor sequence memory task. As demonstrated in the video, the proposed SOPE method is able to capture the dynamics of the connectivity as the rat samples the different odor stimuli.

多元时间序列数据通常表现为非平稳过程的实现,其中协方差矩阵或谱矩阵随时间平滑演变。目前的大多数方法只能回顾性地估计随时间变化的光谱特性,也就是说,在观测到整个数据之后。在许多自适应控制应用中,回顾性评估是一个主要的限制,在这些应用中,评估这些属性并实时检测系统中的变化是很重要的。为了克服这一限制,我们开发了一种在线估计程序,当新的观测值到达时,可以实时更新时变参数。非平稳时间序列建模的一种方法是拟合时变向量自回归模型(tv-VAR)。然而,在线估计这些模型的一个主要障碍是由于参数的高维性而导致的计算成本。现有的卡尔曼滤波或局部最小二乘等方法是可行的。然而,它们并不总是合适的,因为它们提供了有噪声的估计,并且随着时间序列维度的增加,成本会变得过高。在我们的大脑信号应用中,开发一种鲁棒的方法来实时估计潜在随机过程的特性是至关重要的,特别是频谱大脑连接测量。基于这些原因,我们提出了一种新的平滑在线参数估计方法(SOPE),该方法能够在合理的计算复杂度下控制估计的平滑性。因此,即使对高维时间序列,该模型也能实时拟合。我们证明了我们提出的SOPE方法在小维度的均方误差方面与卡尔曼滤波一样好。然而,与卡尔曼滤波不同,SOPE具有较低的计算成本,因此可扩展到更高的维度。最后,我们将SOPE方法应用于执行气味序列记忆任务的大鼠海马的局部场电位活动数据。正如视频中所展示的那样,所提出的SOPE方法能够捕捉到大鼠在不同气味刺激下的连接动态。
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引用次数: 0
Robust conditional spectral analysis of replicated time series 复制时间序列的鲁棒条件谱分析
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/21-sii698
Zeda Li
Classical second-order spectral analysis, which is based on the Fourier transform of the autocovariance functions, focuses on summarizing the oscillatory behaviors of a time series. However, this type of analysis is subject to two major limitations: first, being covariance-based, it cannot captures oscillatory information beyond the second moment, such as time-irreversibility and kurtosis, and cannot accommodate heavy-tail dependence and infinite variance; second, focusing on a single time series, it is unable to quantify the association between multiple time series and other covariates of interests. In this article, we propose a novel nonparametric approach to the spectral analysis of multiple time series and the associated covariates. The procedure is based on the copula spectral density kernel, which inherits the robust-ness properties of quantile regression and does not require any distributional assumptions such as the existence of finite moments. Copula spectral density kernels of different pairs are modeled jointly as a matrix to allow flexible smoothing. Through a tensor-product spline model of Cholesky components of the conditional copula spectral density matrix, the approach provides flexible nonparametric estimates of the copula spectral density matrix as nonparametric functions of frequency and covariate while preserving geometric con-straints. Empirical performance is evaluated in simulation studies and illustrated through an analysis of stride interval time series.
经典的二阶谱分析是基于自协方差函数的傅里叶变换,着重于总结时间序列的振荡行为。然而,这种类型的分析受到两个主要限制:首先,基于协方差,它不能捕获超过第二时刻的振荡信息,如时间不可逆性和峰度,并且不能适应重尾依赖性和无限方差;其次,关注单个时间序列,无法量化多个时间序列与其他感兴趣协变量之间的关联。在本文中,我们提出了一种新的非参数方法来进行多时间序列及其相关协变量的谱分析。该方法基于copula谱密度核,它继承了分位数回归的鲁棒性,并且不需要任何分布假设,如有限矩的存在。不同对的Copula谱密度核联合建模为一个矩阵,允许灵活平滑。该方法通过条件copula谱密度矩阵的Cholesky分量的张量积样条模型,在保持几何约束的同时,将copula谱密度矩阵作为频率和协变量的非参数函数提供灵活的非参数估计。在模拟研究中评估了经验性能,并通过步幅间隔时间序列分析说明了经验性能。
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引用次数: 1
An iterative algorithm with adaptive weights and sparse Laplacian shrinkage for regression problems 回归问题的自适应加权和稀疏拉普拉斯收缩迭代算法
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/22-sii732
Xingyu Chen, Yuehan Yang
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引用次数: 0
Two-stage multivariate dynamic linear models to extract environmental and climate signals in coastal ecosystem data 两阶段多元动态线性模型提取沿海生态系统数据中的环境和气候信号
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/22-sii731
J. Strock, G. Puggioni, S. Menden‐Deuer
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引用次数: 0
Confidence in the treatment decision for an individual patient: strategies for sequential assessment. 对个体患者治疗决定的信心:顺序评估策略。
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 Epub Date: 2023-04-14 DOI: 10.4310/22-sii737
Nina Orwitz, Thaddeus Tarpey, Eva Petkova

Evolving medical technologies have motivated the development of treatment decision rules (TDRs) that incorporate complex, costly data (e.g., imaging). In clinical practice, we aim for TDRs to be valuable by reducing unnecessary testing while still identifying the best possible treatment for a patient. Regardless of how well any TDR performs in the target population, there is an associated degree of uncertainty about its optimality for a specific patient. In this paper, we aim to quantify, via a confidence measure, the uncertainty in a TDR as patient data from sequential procedures accumulate in real-time. We first propose estimating confidence using the distance of a patient's vector of covariates to a treatment decision boundary, with further distances corresponding to higher certainty. We further propose measuring confidence through the conditional probabilities of ultimately (with all possible information available) being assigned a particular treatment, given that the same treatment is assigned with the patient's currently available data or given the treatment recommendation made using only the currently available patient data. As patient data accumulate, the treatment decision is updated and confidence reassessed until a sufficiently high confidence level is achieved. We present results from simulation studies and illustrate the methods using a motivating example from a depression clinical trial. Recommendations for practical use of the measures are proposed.

不断发展的医疗技术推动了治疗决策规则(TDR)的发展,这些规则结合了复杂、昂贵的数据(如成像)。在临床实践中,我们希望 TDR 能够减少不必要的检查,同时为患者确定最佳治疗方案,从而发挥其价值。无论任何 TDR 在目标人群中的表现如何,其对特定患者的最佳治疗效果都存在一定程度的不确定性。在本文中,我们旨在通过置信度来量化 TDR 的不确定性,因为来自连续手术的患者数据是实时积累的。我们首先建议使用患者协变量向量与治疗决策边界的距离来估计置信度,距离越远,置信度越高。我们还建议,在使用患者当前可用数据或仅使用患者当前可用数据提出治疗建议的情况下,通过最终(在所有可能信息都可用的情况下)被分配到特定治疗的条件概率来衡量可信度。随着患者数据的积累,治疗决策会不断更新并重新评估置信度,直到达到足够高的置信度为止。我们介绍了模拟研究的结果,并以抑郁症临床试验为例说明了这些方法。我们还提出了实际使用这些方法的建议。
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引用次数: 0
Analyses of the impact of country specific macro risk variables on gold futures contract and its position as an asset class: evidence from India 特定国家宏观风险变量对黄金期货合约及其资产类别地位的影响分析:来自印度的证据
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/21-sii697
Rupel Nargunam, William W. S. Wei, N. Anuradha
This paper discusses the dependence of gold futures prices on macro risk factors using a multiple linear regression model. Recently introduced uncertainty indexes such as geopolitical risk index and economic policy uncertainty index are included in this study. We also examine the investment nature of gold futures contract among other assets. The results provide insights on the influence of these inter-related macro economic variables on a financial derivative contract in an emerging economy and its unique position in portfolio allocation and are aimed to help practitioners and policy makers.
本文利用多元线性回归模型探讨了黄金期货价格对宏观风险因素的依赖关系。本文采用了近年来引入的地缘政治风险指数和经济政策不确定性指数等不确定性指标。我们还研究了黄金期货合约在其他资产中的投资性质。研究结果提供了这些相互关联的宏观经济变量对新兴经济体金融衍生品合约的影响及其在投资组合配置中的独特地位的见解,旨在帮助从业者和政策制定者。
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引用次数: 0
Study of automatic choice of parameters for forecasting in singular spectrum analysis 奇异谱分析中预测参数的自动选择研究
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/21-sii707
Safia Al-Marhoobi, A. Pepelyshev
Singular spectrum analysis (SSA) is a popular tool for analysing and forecasting time series. The SSA forecasting algorithms have two parameters which should be chosen by the researcher or using the so-called automatic choice based on the root mean squared errors (RMSE) of retrospective forecasts. We study the sensitivity of the RMSE and inves-tigate the reliability of the automatic choice of parameters for forecasting monthly temperature and humidity recorded at three meteorological stations in Oman.
奇异谱分析(SSA)是分析和预测时间序列的常用工具。SSA预测算法有两个参数,这两个参数应该由研究人员选择,或者使用所谓的基于回顾性预测的均方根误差(RMSE)的自动选择。我们研究了RMSE的敏感性,并调查了自动选择参数预测阿曼三个气象站记录的月温度和湿度的可靠性。
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引用次数: 0
A pairwise pseudo-likelihood approach for the additive hazards model with left-truncated and interval-censored data 具有左截距和区间截距数据的加性风险模型的两两伪似然方法
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/22-sii743
Peijie Wang, Yichen Lou, Jianguo Sun
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引用次数: 0
AutoSpec: detection of narrowband frequency changes in time series AutoSpec:检测窄带频率变化的时间序列
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/21-sii703
D. Stoffer
Most established techniques that search for structural breaks in time series have a difficult time identifying small changes in the process, especially when looking for narrowband frequency changes. The problem is that many of the techniques assume very smooth local spectra and tend to produce overly smooth estimates. The problem of over-smoothing tends to produce spectral estimates that miss slight frequency changes because frequencies that are close together will be lumped into one frequency. The goal of this work is to develop techniques that concentrate on detecting slight frequency changes by requiring a high degree of resolution in the frequency domain.
大多数在时间序列中寻找结构断裂的现有技术很难识别过程中的微小变化,特别是在寻找窄带频率变化时。问题是,许多技术假设非常光滑的局部光谱,往往产生过于光滑的估计。过度平滑的问题往往会产生漏掉轻微频率变化的频谱估计,因为接近的频率会被集中到一个频率上。这项工作的目标是开发一种技术,通过在频域要求高分辨率来集中检测轻微的频率变化。
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引用次数: 0
Testing attributable effects hypotheses with an application to the Oregon Health Insurance Experiment 基于俄勒冈健康保险实验的归因效应假设检验
IF 0.8 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-01 DOI: 10.4310/22-sii724
M. Fredrickson, Yuguo Chen
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引用次数: 0
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Statistics and Its Interface
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