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Beyond Animal Testing Index: Benchmarking tool for a world beyond animal testing_suppl1 超越动物测试指数:超越动物测试世界的基准工具
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2304161s1
C. Krul
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引用次数: 0
Russell and Burch's 3Rs then and now: The case of Switzerland. 拉塞尔和伯奇当时和现在的3R:瑞士的情况。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 Epub Date: 2023-06-15 DOI: 10.14573/altex.2303061
Christian Rodriguez Perez, Kirsten Persson, Rosa M Cajiga Morales, Bernice S Elger, David M Shaw

Since Russell and Burch introduced and defined the 3Rs, i.e., the replacement, reduction, and refinement of animal use in research, in 1959, different definitions have emerged and been implemented in guidelines and policies. Switzerland is known for having some of the most restrictive legislation regarding the use of animals, in which the 3Rs are also defined and implemented. To our knowledge, the purpose and definitions of the 3Rs used in the Swiss Animal Welfare Act, Animal Protection Ordinance, and Animal Experimentation Ordinance have never been compared with Russell and Burch’s original purpose and definitions. In this paper we make this comparison with two aims: to reveal ethically relevant departures from the original purpose and definitions, and to provide an ethical evaluation of the current Swiss law regarding the 3Rs. In doing so, we first expose the similarity of purposes. We then identify one risky departure from the original definition of replacement in Swiss law, which shows a problematic focus on species. Finally, we address Swiss law’s failure to apply the 3Rs in the most effective way. With respect to this last point, we discuss the need for 3R conflict resolution, the timing of application of the 3Rs, problematic prioritizations and choices of convenience as well as a solution to apply the 3Rs more effectively using Russell and Burch’s concept of total sum of distress.

自1959年Russell和Burch引入并定义3R,即在研究中替换、减少和改进动物使用以来,出现了不同的定义,并在指导方针和政策中实施。众所周知,瑞士在动物使用方面有一些最严格的立法,其中也定义和实施了3R。据我们所知,《瑞士动物福利法》、《动物保护条例》和《动物实验条例》中使用的3R的目的和定义从未与Russell和Burch的原始目的和定义进行过比较。在本文中,我们将其与两个目标进行了比较:揭示与原始目的和定义的伦理相关偏离,并对瑞士现行有关3R的法律进行伦理评估。在这样做的过程中,我们首先暴露了目的的相似性。然后,我们发现了瑞士法律中对替代的原始定义的一个危险偏离,这表明对物种的关注存在问题。最后,我们讨论了瑞士法律未能以最有效的方式适用3R的问题。关于最后一点,我们讨论了3R冲突解决的必要性、3R应用的时间、有问题的优先级和便利性的选择,以及使用Russell和Burch的痛苦总和概念更有效地应用3R的解决方案。
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引用次数: 1
A human iPSC-based in vitro neural network formation assay to investigate neurodevelopmental toxicity of pesticides. 基于人类ipsc的体外神经网络形成实验研究农药的神经发育毒性。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2206031
Kristina Bartmann, Farina Bendt, Arif Dönmez, Daniel Haag, H Eike Keßel, Stefan Masjosthusmann, Christopher Noel, Ji Wu, Peng Zhou, Ellen Fritsche

Proper brain development is based on the orchestration of key neurodevelopmental processes (KNDP), including the for­mation and function of neural networks. If at least one KNDP is affected by a chemical, an adverse outcome is expected. To enable a higher testing throughput than the guideline animal experiments, a developmental neurotoxicity (DNT) in vitro testing battery (DNT IVB) comprising a variety of assays that model several KNDPs was set up. Gap analysis revealed the need for a human-based assay to assess neural network formation and function (NNF). Therefore, we established the human NNF (hNNF) assay. A co-culture comprised of human induced pluripotent stem cell (hiPSC)-derived excitatory and inhibitory neurons as well as primary human astroglia was differentiated for 35 days on microelectrode arrays (MEA), and spontaneous electrical activity, together with cytotoxicity, was assessed on a weekly basis after washout of the compounds 24 h prior to measurements. In addition to the characterization of the test system, the assay was challenged with 28 com­pounds, mainly pesticides, identifying their DNT potential by evaluating specific spike-, burst-, and network parameters. This approach confirmed the suitability of the assay for screening environmental chemicals. Comparison of benchmark con­centrations (BMC) with an NNF in vitro assay (rNNF) based on primary rat cortical cells revealed differences in sensitivity. Together with the successful implementation of hNNF data into a postulated stressor-specific adverse outcome pathway (AOP) network associated with a plausible molecular initiating event for deltamethrin, this study suggests the hNNF assay as a useful complement to the DNT IVB.

正确的大脑发育是基于关键神经发育过程(KNDP)的协调,包括神经网络的形成和功能。如果至少一种KNDP受到某种化学物质的影响,预计会产生不良后果。为了实现比指导动物实验更高的测试吞吐量,建立了一个发育性神经毒性(DNT)体外测试电池(DNT IVB),其中包括多种模拟几种kndp的分析。差距分析显示,需要以人为基础的分析来评估神经网络的形成和功能(NNF)。因此,我们建立了人NNF (hNNF)检测方法。将人诱导多能干细胞(hiPSC)衍生的兴奋性和抑制性神经元以及原代人星形胶质细胞共培养35天,在微电极阵列(MEA)上分化,并在测量前24小时将化合物洗脱后,每周评估一次自发电活动和细胞毒性。除了对测试系统进行表征外,还对28种化合物(主要是杀虫剂)进行了挑战,通过评估特定的峰值、爆发和网络参数来确定它们的DNT潜力。该方法证实了该方法筛选环境化学物质的适用性。将基准浓度(BMC)与基于原代大鼠皮质细胞的NNF体外实验(rNNF)进行比较,发现敏感性存在差异。结合将hNNF数据成功地应用到假设的应激源特异性不良结果通路(AOP)网络中,该网络与溴氰菊酯的一个可能的分子启动事件相关,本研究表明hNNF分析是DNT IVB的有用补充。
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引用次数: 2
A rodent thyroid-liver chip to capture thyroid toxicity on organ function level. 从器官功能水平捕捉甲状腺毒性的啮齿动物甲状腺肝芯片。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2108262
Diana Karwelat, Julia Kühnlenz, Thomas Steger-Hartmann, Remi Bars, Helen Tinwell, Uwe Marx, Sophie Bauer, Oliver Born, Marian Raschke

Endocrine disruption by environmental chemicals continues to be a concern for human safety. The rat, a widely used model organism in toxicology, is very sensitive to chemical-induced thyroid perturbation, e.g., histopathological alterations in thyroid tissue. Species differences in the susceptibility to thyroid perturbation lead to uncertainty in human safety risk assessments. Hazard identification and characterization of chemically induced thyroid perturbation would therefore benefit from in vitro models addressing different mechanisms of action in a single functional assay, ideally across species. We here introduce a rat thyroid-liver chip that enables simultaneous identification of direct and indirect (liver-mediated) thyroid perturbation on organ-level functions in vitro. A second manuscript describes our work toward a human thyroid-liver chip (Kühnlenz et al., 2022). The presented microfluidic model consisting of primary rat thyroid follicles and liver 3D spheroids maintains a tissue-specific phenotype for up to 21 days. More precisely, the thyroid model exhibits a follicular architecture expressing basolateral and apical markers and secretes T4. Likewise, liver spheroids retain hepatocellular characteristics, e.g., a stable release of albumin and urea, the presence of bile canalicular networks, and the formation of T4-glucuronide. Experiments with reference chemicals demonstrated proficiency to detect direct and indirect mechanisms of thyroid perturbation through decreased thyroid hormone secretion and increased gT4 formation, respectively. Prospectively this rat thyroid-liver chip model, together with its human counterpart, may support a species-specific quantitative in vitro to in vivo extrapolation to improve a data-driven and evidence-based human safety risk assessment with significant contributions to the 3R principles.

环境化学品对内分泌的干扰仍然是人类安全关注的问题。大鼠是毒理学中广泛使用的模型生物,对化学诱导的甲状腺扰动非常敏感,例如甲状腺组织的组织病理学改变。对甲状腺扰动易感性的物种差异导致人类安全风险评估的不确定性。因此,化学诱导的甲状腺扰动的危险识别和表征将受益于在单一功能分析中解决不同作用机制的体外模型,最好是跨物种的模型。我们在此介绍了一种大鼠甲状腺-肝脏芯片,该芯片能够在体外同时识别直接和间接(肝脏介导的)甲状腺对器官水平功能的干扰。第二份手稿描述了我们对人类甲状腺-肝脏芯片的研究(k hnlenz等人,2022)。该微流控模型由原代大鼠甲状腺滤泡和肝脏三维球体组成,可维持组织特异性表型长达21天。更准确地说,甲状腺模型表现出表达基底外侧和根尖标记物的滤泡结构,并分泌T4。同样,肝球体也保留了肝细胞的特征,例如,白蛋白和尿素的稳定释放,胆小管网络的存在,以及t4 -葡萄糖醛酸盐的形成。对照物实验表明,他们能够分别通过甲状腺激素分泌减少和gT4生成增加来检测甲状腺紊乱的直接和间接机制。展望未来,该大鼠甲状腺肝脏芯片模型及其人类对应模型可能支持物种特异性的体外到体内定量外推,以改进数据驱动和循证的人类安全风险评估,并对3R原则做出重大贡献。
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引用次数: 4
A microfluidic thyroid-liver platform to assess chemical safety in humans. 微流控甲状腺-肝脏平台评估人体化学品安全性。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2108261
Julia Kühnlenz, Diana Karwelat, Thomas Steger-Hartmann, Marian Raschke, Sophie Bauer, Özlem Vural, Uwe Marx, Helen Tinwell, Remi Bars

Thyroid hormones (THs) are crucial regulators of human metabolism and early development. During the safety assessment of plant protection products, the human relevance of chemically induced TH perturbations observed in test animals remains uncertain. European regulatory authorities request follow-up in vitro studies to elucidate human-relevant interferences on thyroid gland function or TH catabolism through hepatic enzyme induction. However, human in vitro assays based on single molecular initiating events poorly reflect the complex TH biology and related liver-thyroid axis. To address this complexity, we present human three-dimensional thyroid and liver organoids with key functions of TH metabolism. The thyroid model resembles in vivo-like follicular architecture and a TSH-dependent triiodothyronine synthesis over 21 days, which is inhibited by methimazole. The HepaRG-based liver model, secreting the critical TH-binding proteins albumin and thyroxine-binding globulin, emulates an active TH catabolism via the formation of glucuronidated and sulfated thyroxine (gT4/sT4). Activation of the nuclear receptors PXR and AHR was demonstrated via the induction of specific CYP isoenzymes by rifampicin, pregnenolone-16α-carbonitrile, and β-naphthoflavone. However, this nuclear receptor activation, assumed to regulate UDP-glucuronosyltransferases and sulfotransferases, appeared to have no effect on gT4 and sT4 formation in this human-derived hepatic cell line model. Finally, established single-tissue models were successfully co-cultured in a perfused two-organ chip for 21 days. In conclusion, this model presents a first step towards a complex multimodular human platform that will help to identify both direct and indirect thyroid disruptors that are relevant from a human safety perspective.

甲状腺激素(THs)是人体代谢和早期发育的重要调节因子。在植物保护产品的安全性评估期间,在试验动物中观察到的化学诱导TH扰动与人类的相关性仍然不确定。欧洲监管机构要求进行后续的体外研究,以阐明人类对甲状腺功能或通过肝酶诱导的TH分解代谢的干扰。然而,基于单分子起始事件的人体外实验很难反映复杂的TH生物学和相关的肝-甲状腺轴。为了解决这一复杂性,我们提出了具有TH代谢关键功能的人体三维甲状腺和肝脏类器官。甲状腺模型类似于体内样卵泡结构和tsh依赖的三碘甲状腺原氨酸合成超过21天,甲巯咪唑抑制。基于heparg的肝脏模型,分泌关键的TH结合蛋白白蛋白和甲状腺素结合球蛋白,通过形成葡萄糖醛酸和硫酸甲状腺素(gT4/sT4)模拟活跃的TH分解代谢。通过利福平、孕烯醇酮-16α-碳腈和β-萘黄酮诱导特异性CYP同工酶,证实了核受体PXR和AHR的活化。然而,这种核受体的激活,被认为是调节udp -葡萄糖醛基转移酶和硫转移酶,似乎对人源性肝细胞系模型中gT4和sT4的形成没有影响。最后,将建立的单组织模型成功地在灌注的双器官芯片中共培养21天。总之,该模型向复杂的多模块人类平台迈出了第一步,该平台将有助于识别从人类安全角度相关的直接和间接甲状腺干扰物。
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引用次数: 7
A call for a Human Exposome Project. 呼吁开展人体暴露计划。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2301061
Thomas Hartung

Four decades of the Human Genome Project and its consequences have shown how the entrepreneurial state, through significant investment into science, can drive scientific progress and advance biomedicine. A certain fraction of diseases can now be explained as caused by genetics, and a more significant fraction as impacted by genetics. Besides another fraction caused by pathogens, the third and probably largest impactor is exposure, i.e., the many physicochemical and lifestyle factors. This article makes the case that it is time to start a Human Exposome Project, which systematically explores and catalogs the exposure side of human health and disease. The envisioned Human Exposome Project needs to be more than a scaled exposomics approach, aiming to assess the totality of relevant exposures through ~omics of human body fluids and forming exposure hypotheses. Exposomics is increasingly complemented by exposure science and biomonitoring to measure exposure, mechanistic understanding, human-relevant microphysiological systems, big data, and artificial intelligence (AI) to mine these data and integrate pieces of evidence. The potential impact of AI on a possible Human Exposome Project is so substantial that we should speak of exposome intelligence (EI) because this allows us to expand our limited current knowledge to the big unknown unknowns of threats to human health.

人类基因组计划(Human Genome Project)的40年历程及其成果表明,创业国家通过对科学的大量投资,可以推动科学进步,推动生物医学的发展。现在,有一部分疾病可以解释为是由遗传引起的,而更重要的一部分则是受遗传的影响。除了病原体引起的另一部分外,第三个可能也是最大的影响因素是暴露,即许多物理化学和生活方式因素。这篇文章表明,现在是时候开始一个人类暴露项目,系统地探索和编目人类健康和疾病的暴露方面。设想中的人类暴露体项目需要的不仅仅是一种规模暴露学方法,其目的是通过人体体液组学和形成暴露假设来评估相关暴露的总体情况。暴露组学越来越多地得到暴露科学和生物监测的补充,以测量暴露、机制理解、与人类相关的微生理系统、大数据和人工智能(AI)来挖掘这些数据并整合证据。人工智能对可能的人类暴露项目的潜在影响是如此巨大,以至于我们应该谈论暴露智能(EI),因为这使我们能够将我们有限的当前知识扩展到对人类健康威胁的巨大未知未知。
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引用次数: 2
Novel prediction models for genotoxicity based on biomarker genes in human HepaRG™ cells. 基于人类HepaRG™细胞生物标记基因的新型遗传毒性预测模型。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2206201
Anouck Thienpont, Stefaan Verhulst, Leo A Van Grunsven, Vera Rogiers, Tamara Vanhaecke, Birgit Mertens

Transcriptomics-based biomarkers are promising new approach methodologies (NAMs) to identify molecular events underlying the genotoxic mode of action of chemicals. Previously, we developed the GENOMARK biomarker, consisting of 84 genes selected based on whole genomics DNA microarray profiles of 24 (non-)genotoxic reference chemicals covering different modes of action in metabolically competent human HepaRG™ cells. In the present study, new prediction models for genotoxicity were developed based on an extended reference dataset of 38 chemicals including existing as well as newly generated gene expression data. Both unsupervised and supervised machine learning algorithms were used, but as unsupervised machine learning did not clearly distinguish between groups, the performance of two supervised machine learning algorithms, i.e., support vector machine (SVM) and random forest (RF), was evaluated. More specifically, the predictive accuracy was compared, the sensitivity to outliers for one or more biomarker genes was assessed, and the prediction performance for 10 misleading positive chemicals exposed at their IC10 concentration was determined. In addition, the applicability of both prediction models on a publicly available gene expression dataset, generated with RNA-sequencing, was investigated. Overall, the RF and SVM models were complementary in their classification of chemicals for genotoxicity. To facilitate data analysis, an online application was developed, combining the outcomes of both prediction models. This research demonstrates that the combination of gene expression data with supervised machine learning algorithms can contribute to the ongoing paradigm shift towards a more human-relevant in vitro genotoxicity testing strategy without the use of experimental animals.

基于转录组学的生物标志物是一种很有前途的新方法方法(NAMs),用于识别化学物质遗传毒性作用模式下的分子事件。此前,我们开发了GENOMARK生物标志物,由84个基因组成,这些基因是根据24种(非)遗传毒性参考化学物质的全基因组DNA微阵列谱选择的,这些化学物质覆盖了代谢能力强的人类HepaRG™细胞中不同的作用模式。在本研究中,基于38种化学物质的扩展参考数据集,包括现有的和新生成的基因表达数据,开发了新的遗传毒性预测模型。我们同时使用了无监督和有监督机器学习算法,但由于无监督机器学习没有明确的分组区分,所以我们对支持向量机(SVM)和随机森林(RF)这两种有监督机器学习算法的性能进行了评估。更具体地说,比较了预测的准确性,评估了对一个或多个生物标记基因的异常值的敏感性,并确定了10种暴露在其IC10浓度下的误导性阳性化学物质的预测性能。此外,研究了这两种预测模型在由rna测序生成的公开基因表达数据集上的适用性。总体而言,RF和SVM模型在化学物质遗传毒性分类方面是互补的。为了便于数据分析,我们开发了一个在线应用程序,将两种预测模型的结果结合起来。这项研究表明,基因表达数据与监督机器学习算法的结合可以促进正在进行的范式转变,在不使用实验动物的情况下,向更与人类相关的体外遗传毒性测试策略转变。
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引用次数: 1
How to formulate hypotheses and IATAs to support grouping and read-across of nanoforms. 如何制定假设和iata来支持纳米形式的分组和读取。
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2203241
Fiona A Murphy, Helinor J Johnston, Susan Dekkers, Eric A J Bleeker, Agnes G Oomen, Teresa F Fernandes, Kirsten Rasmussen, Paula Jantunen, Hubert Rauscher, Neil Hunt, Luisana di Cristos, Hedwig M Braakhuis, Andrea Haase, Danail Hristozov, Wendel Wohlleben, Stefania Sabella, Vicki Stone

Manufacturing and functionalizing materials at the nanoscale has led to the generation of a whole array of nanoforms (NFs) of substances varying in size, morphology, and surface characteristics. Due to financial, time, and ethical considerations, testing every unique NF for adverse effects is virtually impossible. Use of hypothesis-driven grouping and read-across approaches, as supported by the GRACIOUS Framework, represents a promising alternative to case-by-case testing that will make the risk assessment process more efficient. Through application of appropriate grouping hypotheses, the Framework facilitates the assessment of similarity between NFs, thereby supporting grouping and read-across of information, minimizing the need for new testing, and aligning with the 3R principles of replacement, reduction, and refinement of animals in toxicology studies. For each grouping hypothesis an integrated approach to testing and assessment (IATA) guides the user in data gathering and acquisition to test the hypothesis, following a structured format to facilitate efficient decision-making. Here we present the template used to generate the GRACIOUS grouping hypotheses encompassing information relevant to “Lifecycle, environmental release, and human exposure”, “What they are: physicochemical characteristics”, “Where they go: environmental fate, uptake, and toxicokinetics”, and “What they do: human and environmental toxicity”. A summary of the template-derived hypotheses focusing on human health is provided, along with an overview of the IATAs generated by the GRACIOUS project. We discuss the application and flexibility of the template, providing the opportunity to expand the application of grouping and read-across in a logical, evidence-based manner to a wider range of NFs and substances.

在纳米尺度上制造和功能化材料已经导致了在尺寸、形态和表面特征上变化的物质的整个纳米形式(NFs)阵列的产生。由于财政、时间和道德方面的考虑,测试每一种独特的NF的副作用实际上是不可能的。在GRACIOUS框架的支持下,使用假设驱动的分组和跨读方法,代表了一种有希望的个案测试替代方案,将使风险评估过程更有效。通过应用适当的分组假设,该框架有助于评估NFs之间的相似性,从而支持信息的分组和解读,最大限度地减少对新测试的需求,并与毒理学研究中动物替换、减少和改进的3R原则保持一致。对于每个分组假设,综合测试和评估方法(IATA)指导用户在数据收集和获取中测试假设,遵循结构化格式以促进有效的决策。在这里,我们展示了用于生成GRACIOUS分组假设的模板,其中包含与“生命周期,环境释放和人类暴露”,“它们是什么:物理化学特征”,“它们去哪里:环境命运,吸收和毒性动力学”以及“它们做什么:人类和环境毒性”相关的信息。本文概述了以人类健康为重点的模板衍生假设,并概述了GRACIOUS项目生成的IATAs。我们讨论了模板的应用和灵活性,为以逻辑、循证的方式将分组和读取的应用扩展到更广泛的NFs和物质提供了机会。
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引用次数: 4
The importance of variations in in vitro dosimetry to support risk assessment of inhaled toxicants_suppl3 体外剂量法变化对支持吸入毒物风险评估的重要性[j]
2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2305311s3
Yvonne Staal
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引用次数: 0
Comparing translational success rates across medical research fields_suppl 比较不同医学研究领域的转化成功率[j]
IF 5.6 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-01 DOI: 10.14573/altex.2208261s
Gwen Van de Wall
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引用次数: 0
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Altex-Alternatives To Animal Experimentation
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