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Accelerated Iterated Filtering 加速迭代滤波
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-19 DOI: 10.17713/ajs.v52i4.1503
D. Nguyen
Simulation-based inferences have attracted much attention in recent years, as the direct computation of the likelihood function in many real-world problems is difficult or even impossible. Iterated filtering (Ionides, Bretó, and King 2006; Ionides, Bhadra, Atchadé,and King 2011) enables maximization of likelihood function via model perturbations and approximation of the gradient of loglikelihood through sequential Monte Carlo filtering. By an application of Stein’s identity, Doucet, Jacob, and Rubenthaler (2013) developed asecond-order approximation of the gradient of log-likelihood using sequential Monte Carlo smoothing. Based on these gradient approximations, we develop a new algorithm for maximizing the likelihood using the Nesterov accelerated gradient. We adopt the accelerated inexact gradient algorithm (Ghadimi and Lan 2016) to iterated filtering framework, relaxing the unbiased gradient approximation condition. We devise a perturbation policy for iterated filtering, allowing the new algorithm to converge at an optimal rate for both concave and non-concave log-likelihood functions. It is comparable to the recently developed Bayes map iterated filtering approach and outperforms the original iterated filtering approach.
基于模拟的推理近年来引起了人们的广泛关注,因为在许多现实问题中,直接计算似然函数是困难的,甚至是不可能的。迭代滤波(Ionides, Bretó, and King 2006;Ionides, Bhadra, atchad,and King 2011)通过模型扰动实现似然函数的最大化,并通过顺序蒙特卡罗滤波逼近对数似然梯度。Doucet、Jacob和Rubenthaler(2013)运用Stein恒等式,利用序贯蒙特卡罗平滑开发了对数似然梯度的二阶近似。基于这些梯度近似,我们开发了一种利用Nesterov加速梯度最大化似然的新算法。我们在迭代滤波框架中采用加速不精确梯度算法(Ghadimi and Lan 2016),放宽了无偏梯度逼近条件。我们设计了一种迭代滤波的扰动策略,允许新算法以最优速率收敛于凹和非凹对数似然函数。它可以与最近开发的贝叶斯映射迭代滤波方法相媲美,并且优于原始迭代滤波方法。
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引用次数: 0
A Generalization of LASSO Modeling via Bayesian Interpretation 基于贝叶斯解释的LASSO模型推广
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-19 DOI: 10.17713/ajs.v52i4.1455
Gayan Warahena-Liyanage, F. Famoye, Carl Lee
The aim of this paper is to introduce a generalized LASSO regression model that is derived using a generalized Laplace (GL) distribution. Five different GL distributions are obtained through the T -R{Y } framework with quantile functions of standard uniform, Weibull, log-logistic, logistic, and extreme value distributions. The properties, including quantile function, mode, and Shannon entropy of these GL distributions are derived. A particular case of GL distributions called the beta-Laplace distribution is explored. Some additional components to the constraint in the ordinary LASSO regression model are obtained through the Bayesian interpretation of LASSO with beta-Laplace priors. The geometric interpretations of these additional components are presented. The effects of the parameters from beta-Laplace distribution in the generalized LASSO regression model are also discussed. Two real data sets are analyzed to illustrate the flexibility and usefulness of the generalized LASSO regression model in the process of variable selection with better prediction performance. Consequently, this research study demonstrates that more flexible statistical distributions can be used to enhance LASSO in terms of flexibility in variable selection and shrinkage with better prediction.
本文的目的是介绍一个广义LASSO回归模型,该模型是利用广义拉普拉斯(GL)分布推导出来的。通过T -R{Y}框架得到五种不同的GL分布,分位数函数分别为标准均匀分布、威布尔分布、对数-logistic分布、logistic分布和极值分布。推导了这些GL分布的分位数函数、模态和Shannon熵等性质。本文探讨了GL分布的一种特殊情况,即β -拉普拉斯分布。利用拉普拉斯先验对LASSO进行贝叶斯解释,得到了普通LASSO回归模型中约束的一些附加分量。给出了这些附加分量的几何解释。讨论了拉普拉斯分布参数对广义LASSO回归模型的影响。通过对两个实际数据集的分析,说明广义LASSO回归模型在变量选择过程中的灵活性和实用性,具有较好的预测性能。因此,本研究表明,更灵活的统计分布可以增强LASSO在变量选择和收缩方面的灵活性,并具有更好的预测效果。
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引用次数: 0
Monitoring Convergence in the European Union with the convergEU Package for R 用convergEU软件包监测欧洲联盟的趋同
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-19 DOI: 10.17713/ajs.v52i4.1468
F. Stefanini, N. D. Nikiforova, Eleonora Peruffo, Martina Bisello, Chiara Litardi, Massimiliano Mascherini
Upward convergence, that is an improvement of Members States’ economic and social indicators’ performance, is a core policy target of the European Union. This concept isembodied in the European Pillar of social rights (EPSR) proclaimed by EU leaders in 2017. In 2018 Eurofound has developed a methodology to measure convergence, which has beenimplemented in the convergEU R package described in this work (rel. 0.5.0). The package extends the original STATA toolbox developed by Eurofound beyond the calculations ofthe four main measures of convergence as it provides functions to download, filter, impute, smooth indicators. Country and indicator fiches are automatically prepared and compiledin HTML format. Graphical output includes qualitative patterns of change along time to emphasize the key behaviour of an indicator with respect to the average of an aggregationof Member States. Besides EU Member States, the analysis of other collections of regions is supported for general indicators if context information is provided. A user-friendly,no coding required, shiny-based web application provides policy makers with a tool to produce convergence reports on selected indicators and countries.
向上趋同,即成员国经济和社会指标绩效的改善,是欧洲联盟的核心政策目标。这一概念体现在欧盟领导人2017年宣布的欧洲社会权利支柱(EPSR)中。2018年,Eurofound开发了一种测量收敛性的方法,该方法已在本工作中描述的convergEU R包中实现(rel. 0.5.0)。该软件包扩展了Eurofound开发的原始STATA工具箱,超出了四个主要收敛措施的计算,因为它提供了下载,过滤,impute,平滑指标的功能。国家和指标文件以HTML格式自动编制和编译。图形输出包括随时间变化的质量模式,以强调指标相对于会员国总数的平均值的关键行为。除欧盟成员国外,如果提供背景资料,还支持对其他区域集合的分析,以编制一般指标。这是一款用户友好、无需编码、基于shine的web应用程序,为政策制定者提供了一种工具,可以制作关于选定指标和国家的趋同报告。
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引用次数: 0
amIcompositional: Simple Tests for Compositional Behaviour of High Throughput Data with Common Transformations amIcompositional:具有公共转换的高吞吐量数据的组合行为的简单测试
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-19 DOI: 10.17713/ajs.v52i4.1617
G. Gloor
Compositional approaches are beginning to permeate high throughput biomedical sciences in the areas of microbiome, genomics, transcriptomics and proteomics. Yet non-compositional approaches are still commonly observed. Non-compositional approaches are particularly problematic in network analysis based on correlation, ordination and exploratory data analysis based on distance, and differential abundance analysis based on normalization. Here we describe the aIc R package, a simple tool that answers the fundamental question: does the dataset or normalization exhibit compositional artefacts that will skew interpretations when analyzing high throughput biomedical data? The aIc R package includes options for several of the most widely used normalizations and filtering methods. The R package includes tests for subcompositional dominance and coherence along with perturbation and scale invariance. Exploratory analysis is facilitated by an R Shiny app that makes the process simple for those not wishing to use an R console. This simple approach will allow research groups to acknowledge and account for potential artefacts in data analysis resulting in more robust and reliable inferences.
组合方法开始渗透到微生物组学、基因组学、转录组学和蛋白质组学等高通量生物医学科学领域。然而,非组合方法仍然经常被观察到。在基于相关性的网络分析、基于距离的排序和探索性数据分析以及基于归一化的差分丰度分析中,非组成方法尤其存在问题。在这里,我们描述了aIc R包,这是一个简单的工具,它回答了一个基本问题:在分析高通量生物医学数据时,数据集或归一化是否表现出会扭曲解释的组合伪影?aIc R包包括几种最广泛使用的规范化和过滤方法的选项。R包包括子成分优势性和相干性以及微扰和尺度不变性的测试。探索性分析由R Shiny应用程序提供,对于那些不希望使用R控制台的人来说,这一过程非常简单。这种简单的方法将允许研究小组承认和解释数据分析中潜在的人为因素,从而产生更稳健和可靠的推断。
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引用次数: 1
Multivariate Asymmetric Distributions of Copula Related Random Variables Copula相关随机变量的多元不对称分布
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-19 DOI: 10.17713/ajs.v52i4.1446
A. Sheikhi, Freshteh Arad, R. Mesiar
It is known that normal distribution plays an important role in analysing symmetric data. However, this symmetric assumption may not hold in many real word and in such cases, asymmetric distribution, including skew normal distribution, are known as the best alternative. Constructing asymmetric distributions is carried out using the conditional/selection approach of several independent variable conditioning on other set of variables and this approach does not work well when the independence between variablesviolated. In this work we construct an asymmetric distribution when variables are dependent using a copula. Specifically, we consider the random vectors X and Y are connected using a copula function CX,Y and we study the selection distribution Z = (X|Y ∈ T ).We present some special cases of our proposed distribution, among them, multivariate skew-normal distribution. Some properties such as moments and moment generating function are investigated. Also, numerical analysis including simulation study as well asa real data set analysis are presented for illustration.
正态分布在对称数据分析中起着重要的作用。然而,这种对称假设在许多现实世界中可能不成立,在这种情况下,不对称分布,包括偏正态分布,被认为是最好的选择。构造非对称分布采用若干自变量对另一组变量进行条件/选择的方法,当变量之间的独立性被破坏时,这种方法不能很好地工作。在这项工作中,我们构造了一个非对称分布,当变量是依赖的,使用一个联结。具体来说,我们考虑随机向量X和Y用一个联结函数CX,Y连接,我们研究选择分布Z = (X|Y∈T)。我们给出了我们所提出的分布的一些特殊情况,其中包括多元偏正态分布。研究了矩和矩生成函数等性质。此外,本文还进行了数值分析,包括仿真研究和实际数据集分析。
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引用次数: 0
The Waves and Cycles of COVID-19 Pandemic: A Phase Synchronization Approach COVID-19大流行的波动和周期:一个阶段同步方法
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-18 DOI: 10.17713/ajs.v52i3.1450
Carmen Borrego-Salcido, R. Juárez-Del-Toro, Alejandro Steven Fonseca-Zendejas
This study pretends to contribute to a better understanding of the COVID-19 dynamics through the non-parametric technique of phase synchronization by comparing the fifteen most affected countries by the number of positive cases plus China, where the firstoutbreak took place in December 2019. It was possible to state the number of cycles and waves for each one of the studied countries and to determine periods of synchronization between them. The results also showed the average duration of the cycles and some coincidences regarding Nason (2020); Bontempi (2021); Coccia (2021); Rusiñol, Zammit, Itarte, Forés, Martı́nez-Puchol, Girones, Borrego, Corominas, and Bofill-Mas (2021). This study is limited by the reliability of the number of positive cases reported by national governments and health authorities because of an insufficient number of tests and a great number of asymptomatic persons but presents a legit alternative to predict the evolution of the pandemic in a country due to the forward looking behavior of another one, therefore studies like this could be useful to implement contention measures and to prepare the health systems in advance.
本研究旨在通过阶段同步的非参数技术,通过比较15个受影响最严重的国家(按阳性病例数量)和2019年12月首次爆发疫情的中国,更好地了解COVID-19的动态。可以说明所研究的每一个国家的周期和波浪的数目,并确定它们之间的同步周期。结果还显示了周期的平均持续时间和一些关于Nason(2020)的巧合;波特米(2021);Coccia (2021);Rusiñol、Zammit、Itarte、forsamacs、marturnez - puchol、Girones、Borrego、Corominas和bofil - mas(2021)。由于检测数量不足和大量无症状者,该研究受到国家政府和卫生当局报告的阳性病例数量的可靠性的限制,但由于另一个国家的前瞻性行为,该研究提出了一种合理的替代方案来预测流行病在一个国家的演变,因此这样的研究可能有助于实施竞争措施并提前为卫生系统做好准备。
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引用次数: 2
Easily Changeable Kurtosis Distribution 容易变化的峰度分布
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-18 DOI: 10.17713/ajs.v52i3.1434
P. Sulewski
The goal of this paper is to introduce the easily changeable kurtosis (ECK) distribution. The uniform distribution appears as a special cases of the ECK distribution. The new distribution tends to the normal distribution. Properties of the ECK distribution such as PDF, CDF, modes, inflection points, quantiles, moments, moment generating function, Moors’ measure, moments of order statistics, random number generator and the Fisher Information Matrix are derived. The unknown parameters of the ECK distribution are estimated by the maximum likelihood method. The Shannon, Renyi and Tsallis entropies are calculated. Illustrative examples of applicability and flexibility of the ECK distribution are given. The most important R codes are presented in the Appendix.
本文的目的是介绍易变峰度分布。均匀分布是ECK分布的一种特殊情况。新分布趋向于正态分布。导出了ECK分布的PDF、CDF、模态、拐点、分位数、矩、矩生成函数、摩尔测度、阶统计量矩、随机数发生器和Fisher信息矩阵等性质。利用极大似然法对ECK分布的未知参数进行估计。计算Shannon、Renyi和Tsallis熵。举例说明了ECK分布的适用性和灵活性。最重要的R代码在附录中给出。
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引用次数: 0
Power Modified Lindley Distribution: Properties, Classical and Bayesian Estimation and Regression Model with Applications 功率修正林德利分布:性质、经典和贝叶斯估计及回归模型及其应用
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-18 DOI: 10.17713/ajs.v52i3.1386
O. Kharazmi, D. Kumar, S. Dey, St. Anthony’s College
In this article, we explore a new probability density function, called the power modified Lindley distribution. Its main feature is to operate a simple trade-off among the generalized exponential, Weibull and gamma distributions, offering an alternative to these three well-established distributions. The proposed model turns out to be quite flexible: its probability density function can be right skewed and its associated hazard rate function may be increasing, decreasing, unimodal and constant. First the model parameters of the proposed distribution are obtained by the maximum likelihood method. Next, Bayes estimators of the unknown parameters are obtained under different loss functions. In addition, bootstrap confidence intervals are provided to compare with Bayes credible intervals. Besides, log power modified Lindley regression model for censored data is proposed. Two real data sets are analyzed to illustrate the flexibility and importance of the proposed model.
在本文中,我们探索了一种新的概率密度函数,称为幂修正林德利分布。它的主要特点是在广义指数分布、威布尔分布和伽马分布之间进行简单的权衡,为这三种公认的分布提供了一种选择。该模型具有一定的灵活性,其概率密度函数可以是正偏的,其相关的危险率函数可以是递增的、递减的、单峰的和恒定的。首先用极大似然法得到了所提出分布的模型参数;然后,在不同的损失函数下得到未知参数的贝叶斯估计量。此外,还提供了自举置信区间与贝叶斯可信区间进行比较。此外,提出了对截尾数据进行对数幂修正的Lindley回归模型。通过对两个实际数据集的分析,说明了该模型的灵活性和重要性。
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引用次数: 0
Taxicab Correspondence Analysis and Taxicab Logratio Analysis: A Comparison on Contingency Tables and Compositional Data 出租车对应分析与出租车对数分析:列联表与成分数据的比较
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-18 DOI: 10.17713/ajs.v52i3.1302
V. Choulakian, J. Allard, S. Mahdi
In this paper, we attempt to see further by relating theory with practice: First, we review the principles on which three interrelated well developed methods for the analysis and visualization of contingency tables and compositional data are erected: Correspondence analysis based on Benzécri’s principle of distributional equivalence, Goodman’s RC association model based on Yule’s principle of scale invariance, and compositional data analysis based on Aitchison’s principle of subcompositional coherence. Second, we introduce a novel index named intrinsic measure of the quality of the signs of the residuals for the choice of the method. The criterion is based on taxicab singular value decomposition, on which the package TaxicabCA in R is developed. We present a minimal R script thatcan be executed to obtain the numerical results and the maps in this paper. Third, we introduce a flexible method based on the novel index for the choice of the constant to be added to contingency tables with zero counts so that logratio methods can be applied.
在本文中,我们试图通过理论联系实际来进一步了解:首先,我们回顾了建立列联表和成分数据分析和可视化的三种相互关联的良好方法的原理:基于benzacrii的分布等效原理的对应分析,基于Yule的尺度不变性原理的Goodman的RC关联模型,以及基于Aitchison的次成分相干原理的成分数据分析。其次,我们引入了一个新的指标,即残差符号质量的内在测度,用于方法的选择。该准则基于出租车奇异值分解,并在此基础上开发了R中的软件包TaxicabCA。我们提供了一个最小的R脚本,可以执行它来获得数值结果和本文的映射。第三,我们引入了一种基于新指标的灵活方法来选择要添加到零计数列联表中的常数,从而可以应用logratio方法。
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引用次数: 2
Using the Discrete Lindley Distribution to Deal with Over-dispersion in Count Data 用离散林德利分布处理计数数据中的过色散
IF 0.6 Q4 STATISTICS & PROBABILITY Pub Date : 2023-07-18 DOI: 10.17713/ajs.v52i3.1465
M. Nguyen, M. Nguyen, N. Le
Count data in environmental epidemiology or ecology often display substantial over-dispersion, and failing to account for the over-dispersion could result in biased estimates and underestimated standard errors. This study develops a new generalized linear model family to model over-dispersed count data by assuming that the response variable follows the discrete Lindley distribution. The iterative weighted least square is developed to fit the model. Furthermore, asymptotic properties of estimators, the goodness of fit statistics are also derived. Lastly, some simulation studies and empirical data applications are carried out, and the generalized discrete Lindley linear model shows a better performance than the Poisson distribution model.
环境流行病学或生态学中的计数数据经常显示出大量的过度分散,如果不能解释过度分散,可能导致有偏差的估计和低估的标准误差。本文通过假设响应变量服从离散林德利分布,建立了一种新的广义线性模型族来模拟过分散的计数数据。采用迭代加权最小二乘法拟合模型。此外,还得到了估计量的渐近性质和拟合优度统计量。最后,进行了一些仿真研究和经验数据应用,结果表明广义离散Lindley线性模型比泊松分布模型表现出更好的性能。
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引用次数: 0
期刊
Austrian Journal of Statistics
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