Pub Date : 2024-09-01Epub Date: 2023-12-07DOI: 10.1002/ppp3.10450
Tad Brown
Studies that show how empire influenced the development of plant genetics add to the established history of genetics and 20th-century agricultural science. One approach to broadening this history is to consider the contributions of students studying abroad and their greater careers back home. Research agendas differed between and within institutions, much as they do today. This article explores the postgraduate education of an Indian groundnut breeder. It highlights the structural challenges faced by researchers at agricultural departments who sought promotion through education and examines the consequences for plant breeding and for farmers.
Summary: Through the biography of V.K. Badami, this article contributes to debates about genetics and plant breeding in the history of science. Badami, an accomplished breeder in the Mysore Department of Agriculture, took a leave to study genetics at the University of Cambridge. His professors nearly failed him, yet Badami's groundnut breeding experiments proved influential for Indian farmers as well as advances in crop science. This history adds to the thesis that academic genetics varied in support of professional plant breeding by comparing institutional expections between Mysore and Cambridge.The argument is developed by reading Badami's student records along with his groundnut breeding experiments in South India.The study connects the disciplinary history of genetics to plant breeding for the British empire.Badami's experience at Cambridge is indicative of the power relationship between academic genetics and imperial plant breeding in the early 20th century. In this case, his commitments as an Indian agricultural officer conflicted with the discipline's devotion to quantitative analysis.
{"title":"From Mysore to Cambridge and back: The education of a groundnut breeder.","authors":"Tad Brown","doi":"10.1002/ppp3.10450","DOIUrl":"10.1002/ppp3.10450","url":null,"abstract":"<p><p>Studies that show how empire influenced the development of plant genetics add to the established history of genetics and 20th-century agricultural science. One approach to broadening this history is to consider the contributions of students studying abroad and their greater careers back home. Research agendas differed between and within institutions, much as they do today. This article explores the postgraduate education of an Indian groundnut breeder. It highlights the structural challenges faced by researchers at agricultural departments who sought promotion through education and examines the consequences for plant breeding and for farmers.</p><p><strong>Summary: </strong>Through the biography of V.K. Badami, this article contributes to debates about genetics and plant breeding in the history of science. Badami, an accomplished breeder in the Mysore Department of Agriculture, took a leave to study genetics at the University of Cambridge. His professors nearly failed him, yet Badami's groundnut breeding experiments proved influential for Indian farmers as well as advances in crop science. This history adds to the thesis that academic genetics varied in support of professional plant breeding by comparing institutional expections between Mysore and Cambridge.The argument is developed by reading Badami's student records along with his groundnut breeding experiments in South India.The study connects the disciplinary history of genetics to plant breeding for the British empire.Badami's experience at Cambridge is indicative of the power relationship between academic genetics and imperial plant breeding in the early 20th century. In this case, his commitments as an Indian agricultural officer conflicted with the discipline's devotion to quantitative analysis.</p>","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7616375/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142020123","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2023-08-14DOI: 10.1002/ppp3.10414
Helen Anne Curry
Agricultural extension is recognized as an important pathway for generating changes in individual farmers' practices and therefore broader patterns of production. In the United States, historical research has implicated extension work in transformations that privileged White farmers and wealthier operations over other producers and that fostered the industrialization and consolidation of farms. This article examines the work of one early 20th-century extension agent and the demonstrations he used to teach farmers how to choose and keep corn seeds and to identify the best performing corn varieties for a particular location. This history can inform contemporary efforts to develop more socially and ecologically aware approaches to agricultural research, extension, and production by emphasizing the need for measures of success that align with community-level objectives and for larger institutional structures that support and sustain such goals.
Summary: The article examines the histories of agricultural extension and crop development in the early 20th-century United States. It discusses the role of farm demonstrations, including the participation of farmer-breeders, in the development of spread of higher yielding corn varieties in the Midwestern states in the 1910s and 1920s. It highlights the emphasis placed on finding locally or regionally appropriate varieties in some early corn extension activities and dwells on the irony that these locally specific endeavors played a role in the development of universalized solutions.The article examines and contextualizes an unusual archival document as an entry point into these histories: The Cornbelt's Last Open Pollinated Corn, a two-volume work prepared by Martin Luther Mosher (1882-1982). Mosher was the first county agricultural extension agent in the state of Iowa and worked in extension until his retirement in 1950.The article makes three main observations: (1) The Cornbelt's Last Open Pollinated Corn is best read as an agricultural demonstration; (2) The Cornbelt's Last Open Pollinated Corn is Mosher's attempt to grapple with the material legacies of his extension work in relation to the different agricultural life he idealized; and (3) Mosher's work exemplifies the complex relationships and expectations seen among breeders, seed companies, extension agents, and farmers in the early 20th-century United States.The article concludes that Mosher's work with open-pollinated corn varieties offers insight into the importance of agricultural extension as a means of crop development and highlights the contingent nature of agricultural industrialization.
{"title":"<i>The Cornbelt's Last Open Pollinated Corn</i>: Agricultural extension and the origins of the hybrid corn seed industry.","authors":"Helen Anne Curry","doi":"10.1002/ppp3.10414","DOIUrl":"10.1002/ppp3.10414","url":null,"abstract":"<p><p>Agricultural extension is recognized as an important pathway for generating changes in individual farmers' practices and therefore broader patterns of production. In the United States, historical research has implicated extension work in transformations that privileged White farmers and wealthier operations over other producers and that fostered the industrialization and consolidation of farms. This article examines the work of one early 20th-century extension agent and the demonstrations he used to teach farmers how to choose and keep corn seeds and to identify the best performing corn varieties for a particular location. This history can inform contemporary efforts to develop more socially and ecologically aware approaches to agricultural research, extension, and production by emphasizing the need for measures of success that align with community-level objectives and for larger institutional structures that support and sustain such goals.</p><p><strong>Summary: </strong>The article examines the histories of agricultural extension and crop development in the early 20th-century United States. It discusses the role of farm demonstrations, including the participation of farmer-breeders, in the development of spread of higher yielding corn varieties in the Midwestern states in the 1910s and 1920s. It highlights the emphasis placed on finding locally or regionally appropriate varieties in some early corn extension activities and dwells on the irony that these locally specific endeavors played a role in the development of universalized solutions.The article examines and contextualizes an unusual archival document as an entry point into these histories: <i>The Cornbelt's Last Open Pollinated Corn</i>, a two-volume work prepared by Martin Luther Mosher (1882-1982). Mosher was the first county agricultural extension agent in the state of Iowa and worked in extension until his retirement in 1950.The article makes three main observations: (1) <i>The Cornbelt's Last Open Pollinated Corn</i> is best read as an agricultural demonstration; (2) <i>The Cornbelt's Last Open Pollinated Corn</i> is Mosher's attempt to grapple with the material legacies of his extension work in relation to the different agricultural life he idealized; and (3) Mosher's work exemplifies the complex relationships and expectations seen among breeders, seed companies, extension agents, and farmers in the early 20th-century United States.The article concludes that Mosher's work with open-pollinated corn varieties offers insight into the importance of agricultural extension as a means of crop development and highlights the contingent nature of agricultural industrialization.</p>","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7616373/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42242947","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aurore Rimlinger, Jérôme Duminil, Marie‐Louise Avana‐Tientcheu, Stéphanie M. Carrière
Societal Impact Statement Crop seed exchange networks, shaped by social dynamics, strongly influence the organization and breadth of plant diversity in human‐managed environments. Integrating an urban and market perspective, this study explores the diversity dynamics of a socio‐economically important Central African fruit tree species, the African plum tree. Tree owners in urban, peri‐urban and rural sites use seeds from different origins as their main propagation material, leading to locational variations in genetic diversity and structure. This analysis contributes toward building a framework to inform the research agenda of cultivated African fruit trees, by highlighting the important role of urban centers in safeguarding crop genetic resources. Summary Biocultural factors constrain the dynamics of crop species diversity. Here, we considered different aspects of the social, spatial and temporal dynamics of morphological and genetic diversity in a multi‐purpose perennial crop, the African plum tree ( Dacryodes edulis ). We assessed (i) how seed exchange networks were organized along urbanization gradients, and how they influenced the distribution of species diversity; (ii) the temporal dynamic of seed exchange network by characterizing species genetic diversity through time. To do so, the study was carried out in Cameroon, where we focused on three urbanization gradients, covering urban, peri‐urban and rural areas, corresponding to three different ethnic groups (Bamileke, Bassa, Beti). We combined interviews with tree owners and nuclear microsatellite‐based genetic analyses. Tree owners from urban and peri‐urban sites primarily used distant seed sources, acquired in the market or from their village of origin, as propagation material, whereas tree owners in rural sites relied primarily on village‐level seeds. In turn, genetic diversity was not evenly distributed, with rural sites exhibiting their own genetic clusters. On the contrary, the genetic diversity of urban sites was enhanced by extensive human‐mediated seed flows. Looking at trees from different age classes, we found that genetic diversity was stable over time. Overall, this first attempt to combine different levels of diversity for African plum trees in commercially connected areas expands the scope for in situ intraspecific conservation by highlighting the contribution of urbanized areas.
{"title":"Can seed exchange networks explain the morphological and genetic diversity in perennial crop species? The case of the tropical fruit tree <scp><i>Dacryodes edulis</i></scp> in rural and urban Cameroon","authors":"Aurore Rimlinger, Jérôme Duminil, Marie‐Louise Avana‐Tientcheu, Stéphanie M. Carrière","doi":"10.1002/ppp3.10455","DOIUrl":"https://doi.org/10.1002/ppp3.10455","url":null,"abstract":"Societal Impact Statement Crop seed exchange networks, shaped by social dynamics, strongly influence the organization and breadth of plant diversity in human‐managed environments. Integrating an urban and market perspective, this study explores the diversity dynamics of a socio‐economically important Central African fruit tree species, the African plum tree. Tree owners in urban, peri‐urban and rural sites use seeds from different origins as their main propagation material, leading to locational variations in genetic diversity and structure. This analysis contributes toward building a framework to inform the research agenda of cultivated African fruit trees, by highlighting the important role of urban centers in safeguarding crop genetic resources. Summary Biocultural factors constrain the dynamics of crop species diversity. Here, we considered different aspects of the social, spatial and temporal dynamics of morphological and genetic diversity in a multi‐purpose perennial crop, the African plum tree ( Dacryodes edulis ). We assessed (i) how seed exchange networks were organized along urbanization gradients, and how they influenced the distribution of species diversity; (ii) the temporal dynamic of seed exchange network by characterizing species genetic diversity through time. To do so, the study was carried out in Cameroon, where we focused on three urbanization gradients, covering urban, peri‐urban and rural areas, corresponding to three different ethnic groups (Bamileke, Bassa, Beti). We combined interviews with tree owners and nuclear microsatellite‐based genetic analyses. Tree owners from urban and peri‐urban sites primarily used distant seed sources, acquired in the market or from their village of origin, as propagation material, whereas tree owners in rural sites relied primarily on village‐level seeds. In turn, genetic diversity was not evenly distributed, with rural sites exhibiting their own genetic clusters. On the contrary, the genetic diversity of urban sites was enhanced by extensive human‐mediated seed flows. Looking at trees from different age classes, we found that genetic diversity was stable over time. Overall, this first attempt to combine different levels of diversity for African plum trees in commercially connected areas expands the scope for in situ intraspecific conservation by highlighting the contribution of urbanized areas.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134954280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Societal Impact Statement Preserving and conserving crop landraces, tended by indigenous farming communities, is crucial for future food security. This research focused on rice landrace diversity in the north‐eastern Himalayan region of Nagaland, India, where Naga communities cultivate rice according to their dietary and cultural preferences. Rice diversity is closely linked to the region's ethnolinguistic and ecological variety. On‐farm conservation, in collaboration with indigenous communities, is imperative to protect these germplasm resources. Involving these communities actively in conservation efforts will safeguard their traditional knowledge, endorse sustainable farming practices, and enhance the resilience of local agricultural systems. Summary Understanding the genetic diversity and cultural significance of crop landraces is crucial for their conservation and sustainable utilization. This study focused on rice landraces from Nagaland in north‐eastern India to assess their genetic diversity and explore their associations with ethnolinguistic groups. We collected 78 rice landraces from Nagaland and a small part of Manipur and conducted microsatellite genotyping for genetic analysis. We integrated social anthropology and population genetics analyses of rice landraces to glean insights into the genetic diversity, population structure, and ethnolinguistic history of rice cultivation in Nagaland. The study revealed the rich cultural significance of rice landraces among the Nagas . Farmers practiced small‐scale subsistence farming, maintaining diverse rice landraces. Naming conventions were based on factors such as seed source, color, grain type, and ecological suitability. Rice landraces played important roles in ethnic cultures, festivals, and religious ceremonies. Genetic analysis identified significant diversity, with 277 alleles across 69 loci and a moderate gene diversity of 0.57. Two distinct sub‐populations were identified, with one dominated by Chakhesang and Angami Nagas and the other by Sümi and Lotha accessions. Differentiation was observed between lowland and upland cultivars, with one sub‐population comprising exclusively lowland varieties. Cultural factors and cultivation practices influenced population differentiation, with ethnicity and ecotype having a significant impact. The study also highlighted the correlation between ethnolinguistic differentiation and the indica–japonica structuring of rice landraces. Different ethnic groups in Nagaland had distinct cultivation practices, contributing to genetic differentiation. Overall, this research emphasizes the need to preserve rice landraces and associated traditional knowledge for future improvements and cultural heritage conservation. It provides insights into genetic diversity, cultural significance, and the relationship between genetic diversity, cultural practices, and agricultural traditions.
{"title":"Ethnolinguistic associations and genetic diversity of rice landraces in Nagaland, India","authors":"Somnath Roy, Bhaskar Chandra Patra, Jitendra Kumar, Puranjay Sar, Uma Shankar Jogi, Zenwang Konyak, Amrita Banerjee, Nabaneeta Basak, Nimai Prasad Mandal, Kailash Chander Bansal","doi":"10.1002/ppp3.10454","DOIUrl":"https://doi.org/10.1002/ppp3.10454","url":null,"abstract":"Societal Impact Statement Preserving and conserving crop landraces, tended by indigenous farming communities, is crucial for future food security. This research focused on rice landrace diversity in the north‐eastern Himalayan region of Nagaland, India, where Naga communities cultivate rice according to their dietary and cultural preferences. Rice diversity is closely linked to the region's ethnolinguistic and ecological variety. On‐farm conservation, in collaboration with indigenous communities, is imperative to protect these germplasm resources. Involving these communities actively in conservation efforts will safeguard their traditional knowledge, endorse sustainable farming practices, and enhance the resilience of local agricultural systems. Summary Understanding the genetic diversity and cultural significance of crop landraces is crucial for their conservation and sustainable utilization. This study focused on rice landraces from Nagaland in north‐eastern India to assess their genetic diversity and explore their associations with ethnolinguistic groups. We collected 78 rice landraces from Nagaland and a small part of Manipur and conducted microsatellite genotyping for genetic analysis. We integrated social anthropology and population genetics analyses of rice landraces to glean insights into the genetic diversity, population structure, and ethnolinguistic history of rice cultivation in Nagaland. The study revealed the rich cultural significance of rice landraces among the Nagas . Farmers practiced small‐scale subsistence farming, maintaining diverse rice landraces. Naming conventions were based on factors such as seed source, color, grain type, and ecological suitability. Rice landraces played important roles in ethnic cultures, festivals, and religious ceremonies. Genetic analysis identified significant diversity, with 277 alleles across 69 loci and a moderate gene diversity of 0.57. Two distinct sub‐populations were identified, with one dominated by Chakhesang and Angami Nagas and the other by Sümi and Lotha accessions. Differentiation was observed between lowland and upland cultivars, with one sub‐population comprising exclusively lowland varieties. Cultural factors and cultivation practices influenced population differentiation, with ethnicity and ecotype having a significant impact. The study also highlighted the correlation between ethnolinguistic differentiation and the indica–japonica structuring of rice landraces. Different ethnic groups in Nagaland had distinct cultivation practices, contributing to genetic differentiation. Overall, this research emphasizes the need to preserve rice landraces and associated traditional knowledge for future improvements and cultural heritage conservation. It provides insights into genetic diversity, cultural significance, and the relationship between genetic diversity, cultural practices, and agricultural traditions.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135186477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brian Dowd‐Uribe, Joeva Sean Rock, Trevor Spreadbury, Patricia Chiril, David Uminsky
Societal Impact Statement Genetically modified (GM) crops have the potential to address multiple challenges for African smallholder farmers but are limited by several institutional constraints. Public–private partnerships (PPPs) are seen as an organizational fix to one such constraint, bringing privately held intellectual property rights on key crop technologies to African public institutions to develop GM crops for smallholder farmers. Here, a new comprehensive dataset of GM crops in Africa is used to understand the extent and efficacy of PPP‐led GM crop development for smallholder farmers and discuss what might limit their potential in the future. Summary Genetically modified (GM) crops are promoted as a key tool to address multiple challenges in Africa, including the impacts of climate change and food insecurity. Observers have noted, however, significant institutional challenges to achieving such goals, most notably, intellectual property rights (IPR) to key GM traits being held by private companies who have limited incentives to develop those technologies for smallholder farmers. To bridge the gap between privately held IPR and pro‐poor crop breeding, advocates have called for increased funding for institutional innovations such as public–private partnerships (PPPs) to facilitate the transfer of crop technologies from private companies to public research institutes. For the past two decades, donors and firms have invested considerable resources toward PPPs. However, to date, few research efforts have empirically examined the extent and effectiveness of PPPs at the continental scale. This study draws from a new comprehensive dataset on GM crop research and development in Africa to examine whether the anticipated advantages of PPPs have resulted in an improved ability to deliver GM crops to smallholder farmers. We find that although PPP research has focused on crops and traits more relevant for smallholder farmers, many of these efforts have been suspended, with only one crop thus far reaching the hands of farmers. PPPs can address some issues related to GM crop development but still appear constrained by other institutional challenges, which may limit their development, reach, and the achievement of targeted benefits for smallholder farmers.
{"title":"Bridging the gap? Public–private partnerships and genetically modified crop development for smallholder farmers in Africa","authors":"Brian Dowd‐Uribe, Joeva Sean Rock, Trevor Spreadbury, Patricia Chiril, David Uminsky","doi":"10.1002/ppp3.10453","DOIUrl":"https://doi.org/10.1002/ppp3.10453","url":null,"abstract":"Societal Impact Statement Genetically modified (GM) crops have the potential to address multiple challenges for African smallholder farmers but are limited by several institutional constraints. Public–private partnerships (PPPs) are seen as an organizational fix to one such constraint, bringing privately held intellectual property rights on key crop technologies to African public institutions to develop GM crops for smallholder farmers. Here, a new comprehensive dataset of GM crops in Africa is used to understand the extent and efficacy of PPP‐led GM crop development for smallholder farmers and discuss what might limit their potential in the future. Summary Genetically modified (GM) crops are promoted as a key tool to address multiple challenges in Africa, including the impacts of climate change and food insecurity. Observers have noted, however, significant institutional challenges to achieving such goals, most notably, intellectual property rights (IPR) to key GM traits being held by private companies who have limited incentives to develop those technologies for smallholder farmers. To bridge the gap between privately held IPR and pro‐poor crop breeding, advocates have called for increased funding for institutional innovations such as public–private partnerships (PPPs) to facilitate the transfer of crop technologies from private companies to public research institutes. For the past two decades, donors and firms have invested considerable resources toward PPPs. However, to date, few research efforts have empirically examined the extent and effectiveness of PPPs at the continental scale. This study draws from a new comprehensive dataset on GM crop research and development in Africa to examine whether the anticipated advantages of PPPs have resulted in an improved ability to deliver GM crops to smallholder farmers. We find that although PPP research has focused on crops and traits more relevant for smallholder farmers, many of these efforts have been suspended, with only one crop thus far reaching the hands of farmers. PPPs can address some issues related to GM crop development but still appear constrained by other institutional challenges, which may limit their development, reach, and the achievement of targeted benefits for smallholder farmers.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135321181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Vaheesan Rajabal, Timothy M. Ghaly, Eleonora Egidi, Mingjing Ke, Anahit Penesyan, Qin Qi, Michael R. Gillings, Sasha G. Tetu
Societal Impact Statement Plants and bacteria interact in complex ways that are crucial to the health and productivity of native vegetation and croplands. While the range of characterised plant‐beneficial bacterial traits continues to grow, key questions remain regarding the distribution and mobility of genes associated with these traits. This work explores the diversity of mobile genetic elements carried by bacteria associated with plant root surfaces, assessing their capacity to help shape plant–bacterial interactions. The significance of this work lies in the potential to contribute to new strategies for enhancing plant health, promoting sustainable agriculture and managing plant diseases in an era when we must respond to environmental change. Summary Integrons are gene capture and expression systems that contribute to bacterial adaptation. Integron research has mainly focused on the role that these elements play in spreading antimicrobial resistance. However, their contribution to niche adaptation is potentially much broader because integrons can sample the vast repertoire of diverse functions encoded by integron gene cassettes. Integrons and gene cassettes have been identified in many bacterial lineages residing in soil and water across varied ecosystems, but there has been little investigation of integrons in plant‐associated bacteria. Bacteria and plants have complex, dynamic relationships that influence plant health and productivity. To investigate whether integrons contribute to adaptative processes in plant microbiomes, we examined gene cassette and microbial taxonomic profiles in rhizoplanes of four important crop species grown under controlled glasshouse conditions. We identified 38,546 unique gene cassettes, including elements carrying genes associated with antibiotic resistance, type II toxin–antitoxin systems and genes with putative functions associated with plant growth promotion, along with a larger set encoding genes of unknown functions. Rhizoplane microbiomes of different plant species showed more similarity in their community composition profiles than in their gene cassette profiles, with complex and distinct suites of gene cassettes associated with each plant species, suggesting that gene cassettes might have a role in specific plant–bacterial interactions. We show that rhizoplane microbiomes carry diverse integron gene cassettes that could play a role in establishing and maintaining rhizoplane communities.
{"title":"Exploring the role of mobile genetic elements in shaping plant–bacterial interactions for sustainable agriculture and ecosystem health","authors":"Vaheesan Rajabal, Timothy M. Ghaly, Eleonora Egidi, Mingjing Ke, Anahit Penesyan, Qin Qi, Michael R. Gillings, Sasha G. Tetu","doi":"10.1002/ppp3.10448","DOIUrl":"https://doi.org/10.1002/ppp3.10448","url":null,"abstract":"Societal Impact Statement Plants and bacteria interact in complex ways that are crucial to the health and productivity of native vegetation and croplands. While the range of characterised plant‐beneficial bacterial traits continues to grow, key questions remain regarding the distribution and mobility of genes associated with these traits. This work explores the diversity of mobile genetic elements carried by bacteria associated with plant root surfaces, assessing their capacity to help shape plant–bacterial interactions. The significance of this work lies in the potential to contribute to new strategies for enhancing plant health, promoting sustainable agriculture and managing plant diseases in an era when we must respond to environmental change. Summary Integrons are gene capture and expression systems that contribute to bacterial adaptation. Integron research has mainly focused on the role that these elements play in spreading antimicrobial resistance. However, their contribution to niche adaptation is potentially much broader because integrons can sample the vast repertoire of diverse functions encoded by integron gene cassettes. Integrons and gene cassettes have been identified in many bacterial lineages residing in soil and water across varied ecosystems, but there has been little investigation of integrons in plant‐associated bacteria. Bacteria and plants have complex, dynamic relationships that influence plant health and productivity. To investigate whether integrons contribute to adaptative processes in plant microbiomes, we examined gene cassette and microbial taxonomic profiles in rhizoplanes of four important crop species grown under controlled glasshouse conditions. We identified 38,546 unique gene cassettes, including elements carrying genes associated with antibiotic resistance, type II toxin–antitoxin systems and genes with putative functions associated with plant growth promotion, along with a larger set encoding genes of unknown functions. Rhizoplane microbiomes of different plant species showed more similarity in their community composition profiles than in their gene cassette profiles, with complex and distinct suites of gene cassettes associated with each plant species, suggesting that gene cassettes might have a role in specific plant–bacterial interactions. We show that rhizoplane microbiomes carry diverse integron gene cassettes that could play a role in establishing and maintaining rhizoplane communities.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136019058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mark B. Gush, Tijana Blanuša, Lauriane S. Chalmin‐Pui, Alistair Griffiths, Elisabeth K. Larsen, Raghavendra Prasad, Marc Redmile‐Gordon, Chloe Sutcliffe
Societal Impact Statement Daunting global challenges of climate change and biodiversity loss may seem overwhelming. However, gardeners have a secret weapon—gardens, balconies, indoor planting, yards and allotments are mini‐ecosystems that offer opportunities to counter perceptions of helplessness, inadequacy and resultant inaction by using those spaces to ‘Do what we can, with what we have, where we are’. Minimising gardening ‘footprints’ to mitigate harmful impacts, whilst maximising gardening ‘handprints’ to enhance benefits, is readily achievable. With this in mind, the Royal Horticultural Society is leading research into environmental horticulture for gardens, and benefits for individual wellbeing. Summary This article presents an integrated and applied research approach to the unique and multi‐disciplinary area of science referred to here as environmental horticulture. It does this by: (a) providing an institutional perspective (The Royal Horticultural Society) on a research approach for this particular area, emphasising why domestic and community gardens are important in the context of global environmental threats; (b) presenting four primary research focus areas and project examples; and (c) highlighting interdisciplinary linkages, future research needs, public engagement/knowledge sharing opportunities, and ‘Green Skills’ development in the area of environmental horticulture. Research focus areas discussed are: (1) responding to the changing climate (adaptation, mitigation and resilience solutions in gardens); (2) ‘plants for purpose’ (harnessing the potential of horticultural plant diversity, and gardening, to help regulate environmental conditions); (3) sustainability and climate risk reduction through effective and efficient resource management (reduction, re‐use, recycling and repurposing); and (4) gardening and cultivated plant choice for human health and wellbeing. We argue that a key research priority is improving our understanding of the linkages and interactions between soil, water, plants, weather and people. These crucial linkages affect above and below ground processes, for both outdoor and indoor plants. They impact the effectiveness with which water and nutrient cycling takes place, the extent to which ecosystem services may be delivered, and the resultant capacity of gardens and gardening to provide environmental and human health benefits.
{"title":"Environmental horticulture for domestic and community gardens—An integrated and applied research approach","authors":"Mark B. Gush, Tijana Blanuša, Lauriane S. Chalmin‐Pui, Alistair Griffiths, Elisabeth K. Larsen, Raghavendra Prasad, Marc Redmile‐Gordon, Chloe Sutcliffe","doi":"10.1002/ppp3.10444","DOIUrl":"https://doi.org/10.1002/ppp3.10444","url":null,"abstract":"Societal Impact Statement Daunting global challenges of climate change and biodiversity loss may seem overwhelming. However, gardeners have a secret weapon—gardens, balconies, indoor planting, yards and allotments are mini‐ecosystems that offer opportunities to counter perceptions of helplessness, inadequacy and resultant inaction by using those spaces to ‘Do what we can, with what we have, where we are’. Minimising gardening ‘footprints’ to mitigate harmful impacts, whilst maximising gardening ‘handprints’ to enhance benefits, is readily achievable. With this in mind, the Royal Horticultural Society is leading research into environmental horticulture for gardens, and benefits for individual wellbeing. Summary This article presents an integrated and applied research approach to the unique and multi‐disciplinary area of science referred to here as environmental horticulture. It does this by: (a) providing an institutional perspective (The Royal Horticultural Society) on a research approach for this particular area, emphasising why domestic and community gardens are important in the context of global environmental threats; (b) presenting four primary research focus areas and project examples; and (c) highlighting interdisciplinary linkages, future research needs, public engagement/knowledge sharing opportunities, and ‘Green Skills’ development in the area of environmental horticulture. Research focus areas discussed are: (1) responding to the changing climate (adaptation, mitigation and resilience solutions in gardens); (2) ‘plants for purpose’ (harnessing the potential of horticultural plant diversity, and gardening, to help regulate environmental conditions); (3) sustainability and climate risk reduction through effective and efficient resource management (reduction, re‐use, recycling and repurposing); and (4) gardening and cultivated plant choice for human health and wellbeing. We argue that a key research priority is improving our understanding of the linkages and interactions between soil, water, plants, weather and people. These crucial linkages affect above and below ground processes, for both outdoor and indoor plants. They impact the effectiveness with which water and nutrient cycling takes place, the extent to which ecosystem services may be delivered, and the resultant capacity of gardens and gardening to provide environmental and human health benefits.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136184643","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Richard A. Sniezko, Jeremy S. Johnson, Angelia Kegley, Robert Danchok
Societal impact statement Forests world‐wide are being negatively affected by non‐native, invasive pathogens and pests, and some tree species face uncertain futures. To retain these species as components of future forests, the rare genetic resistance that exists needs to be identified and harnessed. The applied tree improvement program for whitebark pine ( Pinus albicaulis ), a threatened (in the United States) and endangered (in Canada) keystone species in many forests in western North America, provides an example of what can be accomplished in a relatively short timeframe. The level and frequency of resistance vary by location, and this information will be used to implement the national restoration plan. Summary Forest trees face serious threats from non‐native diseases and pests, often causing high mortality of both the existing trees and regeneration. Developing populations with genetic resistance can help restore forests and retain affected species. Resistance programs have historically focused on species of high economic importance; however, the threats to species of little direct economic value that provide other important ecosystem services are also great. We examined the frequency, level, and geographic variation in genetic resistance to white pine blister rust in the threatened Pinus albicaulis (whitebark pine), a keystone species in high‐elevation ecosystems in western North America. In the two trials reported here, 2‐year‐old seedling progeny of 225 whitebark pine parent trees were inoculated with two geographic sources of the fungal pathogen Cronartium ribicola and evaluated over 5 years for an array of resistance traits. The trials focused primarily on parent trees from the Oregon and Washington populations. We found unexpectedly high levels of quantitative resistance in some seedling families and populations, in stark contrast to levels observed in similar resistance programs with other North American white pine species such as Pinus monticola and Pinus lambertiana . The level of resistance found in some whitebark pine populations provides optimism about potential recovery efforts for this species. Restoration efforts are underway by government agencies, tribes, and non‐government organizations in both the United States and Canada. These efforts may help boost support for applied genetic resistance programs in other forest tree species severely affected by non‐native pathogens or pests.
{"title":"Disease resistance in whitebark pine and potential for restoration of a threatened species","authors":"Richard A. Sniezko, Jeremy S. Johnson, Angelia Kegley, Robert Danchok","doi":"10.1002/ppp3.10443","DOIUrl":"https://doi.org/10.1002/ppp3.10443","url":null,"abstract":"Societal impact statement Forests world‐wide are being negatively affected by non‐native, invasive pathogens and pests, and some tree species face uncertain futures. To retain these species as components of future forests, the rare genetic resistance that exists needs to be identified and harnessed. The applied tree improvement program for whitebark pine ( Pinus albicaulis ), a threatened (in the United States) and endangered (in Canada) keystone species in many forests in western North America, provides an example of what can be accomplished in a relatively short timeframe. The level and frequency of resistance vary by location, and this information will be used to implement the national restoration plan. Summary Forest trees face serious threats from non‐native diseases and pests, often causing high mortality of both the existing trees and regeneration. Developing populations with genetic resistance can help restore forests and retain affected species. Resistance programs have historically focused on species of high economic importance; however, the threats to species of little direct economic value that provide other important ecosystem services are also great. We examined the frequency, level, and geographic variation in genetic resistance to white pine blister rust in the threatened Pinus albicaulis (whitebark pine), a keystone species in high‐elevation ecosystems in western North America. In the two trials reported here, 2‐year‐old seedling progeny of 225 whitebark pine parent trees were inoculated with two geographic sources of the fungal pathogen Cronartium ribicola and evaluated over 5 years for an array of resistance traits. The trials focused primarily on parent trees from the Oregon and Washington populations. We found unexpectedly high levels of quantitative resistance in some seedling families and populations, in stark contrast to levels observed in similar resistance programs with other North American white pine species such as Pinus monticola and Pinus lambertiana . The level of resistance found in some whitebark pine populations provides optimism about potential recovery efforts for this species. Restoration efforts are underway by government agencies, tribes, and non‐government organizations in both the United States and Canada. These efforts may help boost support for applied genetic resistance programs in other forest tree species severely affected by non‐native pathogens or pests.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135803727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Isabel Ortega‐Salazar, Daphne Crum, Adrian O. Sbodio, Yuko Sugiyama, Adam Adaskaveg, Duoduo Wang, Graham B. Seymour, Xueqi Li, Selina C. Wang, Barbara Blanco‐Ulate
Social Impact Statement Tomato fruit is an important and popular commodity producing $95.62 billion worldwide. Tomato fruit losses in the supply chain vary between 25% and 42% depending on the production area and the availability of postharvest technologies. For many decades, conventional tomato breeding programs have focused on extending the shelf‐life of fresh‐market varieties. However, in many instances, consumer‐based quality traits were not considered a priority. Consumers are now demanding safe, nutrient‐rich, high‐flavor, and convenient fruit. Here, we demonstrate the use of gene editing to improve fruit shelf‐life and positively impact quality, which can help significantly reduce tomato fruit losses and meet consumer expectations. Summary Finding alternative ways to extend tomato fruit shelf‐life without reducing the quality is critical to ensure the accessibility and likeability of this commodity worldwide. Improving fruit firmness in tomato fresh‐market varieties directly impacts their shelf‐life potential. We simultaneously knocked out two pectin‐degrading enzymes, polygalacturonase (SlPG2a) and pectate lyase (SlPL), key for tomato fruit softening. We expected this gene‐editing approach to result in longer‐lasting fruit without negatively impacting consumer‐based quality attributes. By generating the double clustered regularly interspaced short palindromic repeats (CRISPR) knockout PGPL, we evaluated the combined functions of SlPG2a and SlPL on fruit quality, including shelf‐life attributes like firmness and water loss, fruit marketability, and disease incidence. We also assessed additional attributes impacting consumer acceptance, such as taste and aroma. We revealed that the enzymes SlPG2a and SlPL act additively, significantly impacting fruit firmness and shelf‐life, with the double CRISPR knockout PGPL outperforming the wild‐type fruit. Additionally, fruit quality traits, such as sugar: acid ratio, aroma volatiles, and skin color, were improved or not affected in the double CRISPR knockout PGPL compared to the wild‐type. The discoveries of this research provide new insights into the influence of pectin backbone degradation on fruit physiology and postharvest quality, which can be used in crop improvement programs to make fruit more resilient in the supply chain without compromising quality.
{"title":"Double CRISPR knockout of pectin degrading enzymes improves tomato shelf‐life while ensuring fruit quality","authors":"Isabel Ortega‐Salazar, Daphne Crum, Adrian O. Sbodio, Yuko Sugiyama, Adam Adaskaveg, Duoduo Wang, Graham B. Seymour, Xueqi Li, Selina C. Wang, Barbara Blanco‐Ulate","doi":"10.1002/ppp3.10445","DOIUrl":"https://doi.org/10.1002/ppp3.10445","url":null,"abstract":"Social Impact Statement Tomato fruit is an important and popular commodity producing $95.62 billion worldwide. Tomato fruit losses in the supply chain vary between 25% and 42% depending on the production area and the availability of postharvest technologies. For many decades, conventional tomato breeding programs have focused on extending the shelf‐life of fresh‐market varieties. However, in many instances, consumer‐based quality traits were not considered a priority. Consumers are now demanding safe, nutrient‐rich, high‐flavor, and convenient fruit. Here, we demonstrate the use of gene editing to improve fruit shelf‐life and positively impact quality, which can help significantly reduce tomato fruit losses and meet consumer expectations. Summary Finding alternative ways to extend tomato fruit shelf‐life without reducing the quality is critical to ensure the accessibility and likeability of this commodity worldwide. Improving fruit firmness in tomato fresh‐market varieties directly impacts their shelf‐life potential. We simultaneously knocked out two pectin‐degrading enzymes, polygalacturonase (SlPG2a) and pectate lyase (SlPL), key for tomato fruit softening. We expected this gene‐editing approach to result in longer‐lasting fruit without negatively impacting consumer‐based quality attributes. By generating the double clustered regularly interspaced short palindromic repeats (CRISPR) knockout PGPL, we evaluated the combined functions of SlPG2a and SlPL on fruit quality, including shelf‐life attributes like firmness and water loss, fruit marketability, and disease incidence. We also assessed additional attributes impacting consumer acceptance, such as taste and aroma. We revealed that the enzymes SlPG2a and SlPL act additively, significantly impacting fruit firmness and shelf‐life, with the double CRISPR knockout PGPL outperforming the wild‐type fruit. Additionally, fruit quality traits, such as sugar: acid ratio, aroma volatiles, and skin color, were improved or not affected in the double CRISPR knockout PGPL compared to the wild‐type. The discoveries of this research provide new insights into the influence of pectin backbone degradation on fruit physiology and postharvest quality, which can be used in crop improvement programs to make fruit more resilient in the supply chain without compromising quality.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136212701","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Societal Impact Statement Yam is a major tropical root crop and a staple food for millions of people in West Africa. The model used in this study shows that promoting the use of improved seed tubers would help increase yields and profitability for farmers. This could lead to improved food security, increased income and higher standards of living. Additionally, the model serves as a useful decision‐support tool for farmers and technicians to choose, depending on the species, the optimum seed‐tuber weight and planting date. This study provides agronomic arguments to justify investments in the improvement of yam planting materials in West Africa. Summary Yam ( Dioscorea spp.) is a major tropical root crop, grown mainly in West Africa using traditional extensive techniques. Farmers typically reuse seed tubers by setting aside up to 30% of their production for the next season, leading to high planting material variability that affects yields. Several initiatives aim to promote the use of improved seed tubers. However, to help their adoption, it is necessary to quantify the agronomic and economic advantages. To address this, a model for individual plant growth and development was developed based on six experiments in Benin from 2007 to 2009. This model simulates the combined effect of emergence (through photoperiod and temperature) and seed‐tuber weight on yam plant growth and development. Its predictions were highly correlated with observed plant tuber yield ( R 2 > 0.83). Results highlight the crucial role of key processes such as seed‐tuber physiological age and photoperiod sensitivity. The study shows that for the traditional planting dates, the use of improved planting material could lead to a yield increase of 22%–27% and a gain in profitability of 30% and 40% for Dioscorea alata and Dioscorea rotundata , respectively. The model proved to be a useful decision‐support tool for choosing an optimum seed‐tuber weight, depending on the species and the planting date. This study validates investments in yam seed systems in West Africa. However, beyond seed size and health, other factors such as dormancy, storage time and their management need to be considered to address emergence heterogeneity and its impact on yield.
{"title":"Expected yield and economic improvements of a yam seed system in West Africa using agro‐physiological modelling","authors":"Denis Cornet, Jorge Sierra, Régis Tournebize, Komivi Dossa, Benoît Gabrielle","doi":"10.1002/ppp3.10446","DOIUrl":"https://doi.org/10.1002/ppp3.10446","url":null,"abstract":"Societal Impact Statement Yam is a major tropical root crop and a staple food for millions of people in West Africa. The model used in this study shows that promoting the use of improved seed tubers would help increase yields and profitability for farmers. This could lead to improved food security, increased income and higher standards of living. Additionally, the model serves as a useful decision‐support tool for farmers and technicians to choose, depending on the species, the optimum seed‐tuber weight and planting date. This study provides agronomic arguments to justify investments in the improvement of yam planting materials in West Africa. Summary Yam ( Dioscorea spp.) is a major tropical root crop, grown mainly in West Africa using traditional extensive techniques. Farmers typically reuse seed tubers by setting aside up to 30% of their production for the next season, leading to high planting material variability that affects yields. Several initiatives aim to promote the use of improved seed tubers. However, to help their adoption, it is necessary to quantify the agronomic and economic advantages. To address this, a model for individual plant growth and development was developed based on six experiments in Benin from 2007 to 2009. This model simulates the combined effect of emergence (through photoperiod and temperature) and seed‐tuber weight on yam plant growth and development. Its predictions were highly correlated with observed plant tuber yield ( R 2 > 0.83). Results highlight the crucial role of key processes such as seed‐tuber physiological age and photoperiod sensitivity. The study shows that for the traditional planting dates, the use of improved planting material could lead to a yield increase of 22%–27% and a gain in profitability of 30% and 40% for Dioscorea alata and Dioscorea rotundata , respectively. The model proved to be a useful decision‐support tool for choosing an optimum seed‐tuber weight, depending on the species and the planting date. This study validates investments in yam seed systems in West Africa. However, beyond seed size and health, other factors such as dormancy, storage time and their management need to be considered to address emergence heterogeneity and its impact on yield.","PeriodicalId":52849,"journal":{"name":"Plants People Planet","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136212001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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