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The hyperbolic model for edge and texture detection in the primary visual cortex. 初级视觉皮层中边缘和纹理检测的双曲线模型。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2020-01-30 DOI: 10.1186/s13408-020-0079-y
Pascal Chossat

The modeling of neural fields in the visual cortex involves geometrical structures which describe in mathematical formalism the functional architecture of this cortical area. The case of contour detection and orientation tuning has been extensively studied and has become a paradigm for the mathematical analysis of image processing by the brain. Ten years ago an attempt was made to extend these models by replacing orientation (an angle) with a second-order tensor built from the gradient of the image intensity, and it was named the structure tensor. This assumption does not follow from biological observations (experimental evidence is still lacking) but from the idea that the effectiveness of texture processing with the structure tensor in computer vision may well be exploited by the brain itself. The drawback is that in this case the geometry is not Euclidean but hyperbolic instead, which complicates the analysis substantially. The purpose of this review is to present the methodology that was developed in a series of papers to investigate this quite unusual problem, specifically from the point of view of tuning and pattern formation. These methods, which rely on bifurcation theory with symmetry in the hyperbolic context, might be of interest for the modeling of other features such as color vision or other brain functions.

视觉皮层神经场的建模涉及几何结构,它以数学形式描述了这一皮层区域的功能结构。轮廓检测和方位调节的案例已被广泛研究,并已成为大脑图像处理数学分析的典范。十年前,有人尝试用由图像强度梯度建立的二阶张量代替方向(角度)来扩展这些模型,并将其命名为结构张量。这一假设并非来自生物学观察(目前仍缺乏实验证据),而是来自这样一种想法,即在计算机视觉中使用结构张量进行纹理处理的有效性很可能被大脑本身所利用。不足之处在于,在这种情况下,几何图形不是欧几里得几何图形,而是双曲几何图形,这大大增加了分析的复杂性。这篇综述的目的是介绍在一系列论文中为研究这个非常不寻常的问题而开发的方法,特别是从调整和模式形成的角度进行研究。这些方法依赖于双曲线背景下具有对称性的分岔理论,可能对其他特征(如色觉或其他大脑功能)的建模很有意义。
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引用次数: 0
Exact solutions to cable equations in branching neurons with tapering dendrites. 具有锥形树突的分支神经元索方程的精确解。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2020-01-28 DOI: 10.1186/s13408-020-0078-z
Lu Yihe, Yulia Timofeeva

Neurons are biological cells with uniquely complex dendritic morphologies that are not present in other cell types. Electrical signals in a neuron with branching dendrites can be studied by cable theory which provides a general mathematical modelling framework of spatio-temporal voltage dynamics. Typically such models need to be solved numerically unless the cell membrane is modelled either by passive or quasi-active dynamics, in which cases analytical solutions can be reduced to calculation of the Green's function describing the fundamental input-output relationship in a given morphology. Such analytically tractable models often assume individual dendritic segments to be cylinders. However, it is known that dendritic segments in many types of neurons taper, i.e. their radii decline from proximal to distal ends. Here we consider a generalised form of cable theory which takes into account both branching and tapering structures of dendritic trees. We demonstrate that analytical solutions can be found in compact algebraic forms in an arbitrary branching neuron with a class of tapering dendrites studied earlier in the context of single neuronal cables by Poznanski (Bull. Math. Biol. 53(3):457-467, 1991). We apply this extended framework to a number of simplified neuronal models and contrast their output dynamics in the presence of tapering versus cylindrical segments.

神经元是一种生物细胞,具有其他细胞类型所没有的独特复杂的树突形态。具有分支树突的神经元中的电信号可通过电缆理论进行研究,该理论为时空电压动态提供了一个通用的数学建模框架。通常情况下,此类模型需要进行数值求解,除非细胞膜采用被动或准主动动力学建模,在这种情况下,分析求解可简化为计算描述给定形态中基本输入-输出关系的格林函数。这种可分析的模型通常假定单个树突节段为圆柱体。然而,众所周知,许多类型的神经元的树突节段都是锥形的,即它们的半径从近端向远端递减。在此,我们将考虑树突树的分枝和渐细结构,研究索状理论的一般形式。我们证明,在波兹南斯基(Bull. Math. Poznanski)早先研究的单神经元缆索的背景下,可以用紧凑的代数形式找到任意分支神经元与一类锥形树突的解析解(Bull.Math.53(3):457-467, 1991)。我们将这一扩展框架应用于一些简化的神经元模型,并对比了它们在锥形和圆柱形神经节存在时的输出动态。
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引用次数: 0
Correction to: Linking demyelination to compound action potential dispersion with a spike-diffuse-spike approach 更正:用尖峰-扩散-尖峰方法将脱髓鞘与复合动作电位分散联系起来
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-08-22 DOI: 10.1186/s13408-019-0076-1
R. Naud, A. Longtin
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引用次数: 0
Data-driven inference for stationary jump-diffusion processes with application to membrane voltage fluctuations in pyramidal neurons 平稳跳跃扩散过程的数据驱动推理及其在锥体神经元膜电压波动中的应用
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-07-26 DOI: 10.1186/s13408-019-0074-3
A. Melanson, A. Longtin
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引用次数: 8
Drift-diffusion models for multiple-alternative forced-choice decision making. 用于多个备选方案的强制选择决策的漂移扩散模型。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-07-03 DOI: 10.1186/s13408-019-0073-4
Alex Roxin

The canonical computational model for the cognitive process underlying two-alternative forced-choice decision making is the so-called drift-diffusion model (DDM). In this model, a decision variable keeps track of the integrated difference in sensory evidence for two competing alternatives. Here I extend the notion of a drift-diffusion process to multiple alternatives. The competition between n alternatives takes place in a linear subspace of [Formula: see text] dimensions; that is, there are [Formula: see text] decision variables, which are coupled through correlated noise sources. I derive the multiple-alternative DDM starting from a system of coupled, linear firing rate equations. I also show that a Bayesian sequential probability ratio test for multiple alternatives is, in fact, equivalent to these same linear DDMs, but with time-varying thresholds. If the original neuronal system is nonlinear, one can once again derive a model describing a lower-dimensional diffusion process. The dynamics of the nonlinear DDM can be recast as the motion of a particle on a potential, the general form of which is given analytically for an arbitrary number of alternatives.

两种替代强迫选择决策背后的认知过程的典型计算模型是所谓的漂移-扩散模型(DDM)。在这个模型中,一个决策变量跟踪两个竞争方案的感官证据的综合差异。在这里,我将漂移扩散过程的概念扩展到多个备选方案。n个备选方案之间的竞争发生在[公式:见正文]维度的线性子空间中;也就是说,有[公式:见正文]决策变量,它们通过相关的噪声源耦合。我从一个耦合的线性发射率方程组出发,推导出了多个备选DDM。我还表明,多个备选方案的贝叶斯序列概率比测试实际上等效于这些相同的线性DDM,但具有时变阈值。如果原始神经元系统是非线性的,则可以再次导出描述低维扩散过程的模型。非线性DDM的动力学可以重新定义为粒子在势上的运动,其一般形式是对任意数量的备选方案进行解析给出的。
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引用次数: 18
A modified Hodgkin-Huxley model to show the effect of motor cortex stimulation on the trigeminal neuralgia network. 改良的霍奇金-赫胥黎模型,用于显示运动皮层刺激对三叉神经痛网络的影响。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-05-31 DOI: 10.1186/s13408-019-0072-5
Mohammadreza Khodashenas, Golnaz Baghdadi, Farzad Towhidkhah

Background: Trigeminal neuralgia (TN) is a severe neuropathic pain, which has an electric shock-like characteristic. There are some common treatments for this pain such as medicine, microvascular decompression or radio frequency. In this regard, transcranial direct current stimulation (tDCS) is another therapeutic method to reduce pain, which has been recently attracting the therapists' attention. The positive effect of tDCS on TN was shown in many previous studies. However, the mechanism of the tDCS effect has remained unclear.

Objective: This study aims to model the neuronal behavior of the main known regions of the brain participating in TN pathways to study the effect of transcranial direct current stimulation.

Method: The proposed model consists of several blocks: (1) trigeminal nerve, (2) trigeminal ganglion, (3) PAG (periaqueductal gray in the brainstem), (4) thalamus, (5) motor cortex (M1) and (6) somatosensory cortex (S1). Each of these components is represented by a modified Hodgkin-Huxley (HH) model. The modification of the HH model was done based on some neurological facts of pain sodium channels. The input of the model involves any stimuli to the 'trigeminal nerve,' which cause the pain, and the output is the activity of the somatosensory cortex. An external current, which is considered as an electrical current, was applied to the motor cortex block of the model.

Result: The results showed that by decreasing the conductivity of the slow sodium channels (pain channels) and applying tDCS over the M1, the activity of the somatosensory cortex would be reduced. This reduction can cause pain relief.

Conclusion: The proposed model provided some possible suggestions about the relationship between the effects of tDCS and associated components in TN, and also the relationship between the pain measurement index, somatosensory cortex activity, and the strength of tDCS.

背景:三叉神经痛(TN三叉神经痛(TN)是一种严重的神经病理性疼痛,具有电击样特征。对于这种疼痛,有一些常见的治疗方法,如药物、微血管减压或射频。在这方面,经颅直流电刺激(tDCS)是另一种减轻疼痛的治疗方法,最近引起了治疗师的关注。之前的许多研究都显示了经颅直流电刺激对 TN 的积极作用。然而,tDCS 的作用机制仍不清楚:本研究旨在模拟参与 TN 通路的已知大脑主要区域的神经元行为,以研究经颅直流电刺激的效果:所提议的模型由几个区块组成:(1) 三叉神经;(2) 三叉神经节;(3) PAG(脑干的下陷灰质周围);(4) 丘脑;(5) 运动皮层(M1);(6) 体感皮层(S1)。其中每个部分都由一个改进的霍奇金-赫胥黎(HH)模型来表示。对 HH 模型的修改是基于疼痛钠通道的一些神经学事实。该模型的输入包括对 "三叉神经 "的任何刺激,这些刺激会引起疼痛,而输出则是躯体感觉皮层的活动。在模型的运动皮层区块施加了被视为电流的外部电流:结果表明,通过降低慢钠离子通道(疼痛通道)的电导率并在 M1 上施加 tDCS,躯体感觉皮层的活动会减少。这种减少可导致疼痛缓解:提出的模型为 tDCS 的效果与 TN 中相关成分之间的关系,以及疼痛测量指数、躯体感觉皮层活动和 tDCS 强度之间的关系提供了一些可能的建议。
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引用次数: 0
Linking demyelination to compound action potential dispersion with a spike-diffuse-spike approach. 用尖峰-扩散-尖峰方法将脱髓鞘与复合动作电位分散联系起来。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-05-30 DOI: 10.1186/s13408-019-0071-6
Richard Naud, André Longtin

To establish and exploit novel biomarkers of demyelinating diseases requires a mechanistic understanding of axonal propagation. Here, we present a novel computational framework called the stochastic spike-diffuse-spike (SSDS) model for assessing the effects of demyelination on axonal transmission. It models transmission through nodal and internodal compartments with two types of operations: a stochastic integrate-and-fire operation captures nodal excitability and a linear filtering operation describes internodal propagation. The effects of demyelinated segments on the probability of transmission, transmission delay and spike time jitter are explored. We argue that demyelination-induced impedance mismatch prevents propagation mostly when the action potential leaves a demyelinated region, not when it enters a demyelinated region. In addition, we model sodium channel remodeling as a homeostatic control of nodal excitability. We find that the effects of mild demyelination on transmission probability and delay can be largely counterbalanced by an increase in excitability at the nodes surrounding the demyelination. The spike timing jitter, however, reflects the level of demyelination whether excitability is fixed or is allowed to change in compensation. This jitter can accumulate over long axons and leads to a broadening of the compound action potential, linking microscopic defects to a mesoscopic observable. Our findings articulate why action potential jitter and compound action potential dispersion can serve as potential markers of weak and sporadic demyelination.

建立和开发脱髓鞘疾病的新生物标志物需要对轴突繁殖的机制理解。在这里,我们提出了一种新的计算框架,称为随机尖峰-扩散-尖峰(SSDS)模型,用于评估脱髓鞘对轴突传输的影响。它通过两种类型的操作来模拟节点间和节点间的传输:一个随机的积分和火操作捕获节点的兴奋性,一个线性滤波操作描述节点间的传播。探讨了脱髓鞘线段对传输概率、传输延迟和尖峰时间抖动的影响。我们认为脱髓鞘诱导的阻抗失配主要在动作电位离开脱髓鞘区域时阻止传播,而不是在动作电位进入脱髓鞘区域时。此外,我们将钠离子通道重构建模为对神经节兴奋性的稳态控制。我们发现轻度脱髓鞘对传输概率和延迟的影响可以通过脱髓鞘周围淋巴结兴奋性的增加在很大程度上抵消。然而,无论兴奋性是固定的还是在补偿中允许变化,脉冲时序抖动都反映了脱髓鞘的水平。这种抖动可以在长轴突上积累,并导致复合动作电位的扩大,将微观缺陷与介观观察联系起来。我们的研究结果阐明了为什么动作电位抖动和复合动作电位分散可以作为弱脱髓鞘和散发性脱髓鞘的潜在标志。
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引用次数: 8
Efficient calculation of heterogeneous non-equilibrium statistics in coupled firing-rate models. 耦合燃烧速率模型中非平衡统计量的高效计算。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-05-09 DOI: 10.1186/s13408-019-0070-7
Cheng Ly, Woodrow L Shew, Andrea K Barreiro

Understanding nervous system function requires careful study of transient (non-equilibrium) neural response to rapidly changing, noisy input from the outside world. Such neural response results from dynamic interactions among multiple, heterogeneous brain regions. Realistic modeling of these large networks requires enormous computational resources, especially when high-dimensional parameter spaces are considered. By assuming quasi-steady-state activity, one can neglect the complex temporal dynamics; however, in many cases the quasi-steady-state assumption fails. Here, we develop a new reduction method for a general heterogeneous firing-rate model receiving background correlated noisy inputs that accurately handles highly non-equilibrium statistics and interactions of heterogeneous cells. Our method involves solving an efficient set of nonlinear ODEs, rather than time-consuming Monte Carlo simulations or high-dimensional PDEs, and it captures the entire set of first and second order statistics while allowing significant heterogeneity in all model parameters.

理解神经系统的功能需要仔细研究瞬时(非平衡)神经对外界快速变化的嘈杂输入的反应。这种神经反应是由多个异质脑区之间的动态相互作用产生的。这些大型网络的真实建模需要大量的计算资源,特别是当考虑高维参数空间时。通过假设准稳态活动,可以忽略复杂的时间动力学;然而,在许多情况下,准稳态假设是不成立的。在这里,我们开发了一种新的简化方法,用于接收背景相关噪声输入的一般异质发射率模型,该模型可以准确地处理高度非平衡统计和异质细胞的相互作用。我们的方法涉及求解一组有效的非线性ode,而不是耗时的蒙特卡罗模拟或高维pde,并且它捕获了整个一阶和二阶统计数据集,同时允许所有模型参数中的显着异质性。
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引用次数: 3
The uncoupling limit of identical Hopf bifurcations with an application to perceptual bistability 相同Hopf分岔的解耦极限及其在感知双稳定性中的应用
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-01-22 DOI: 10.1186/s13408-019-0075-2
Alberto Pérez-Cervera, P. Ashwin, G. Huguet, Tere M. Seara, J. Rankin
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引用次数: 7
Special Issue from the 2017 International Conference on Mathematical Neuroscience. 2017年数理神经科学国际会议特刊。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2019-01-07 DOI: 10.1186/s13408-018-0069-5
Zachary P Kilpatrick, Julijana Gjorgjieva, Robert Rosenbaum

The ongoing acquisition of large and multifaceted data sets in neuroscience requires new mathematical tools for quantitatively grounding these experimental findings. Since 2015, the International Conference on Mathematical Neuroscience (ICMNS) has provided a forum for researchers to discuss current mathematical innovations emerging in neuroscience. This special issue assembles current research and tutorials that were presented at the 2017 ICMNS held in Boulder, Colorado from May 30 to June 2. Topics discussed at the meeting include correlation analysis of network activity, information theory for plastic synapses, combinatorics for attractor neural networks, and novel data assimilation methods for neuroscience-all of which are represented in this special issue.

在神经科学中不断获得大量和多方面的数据集需要新的数学工具来定量地奠定这些实验发现的基础。自2015年以来,国际数学神经科学会议(ICMNS)为研究人员提供了一个讨论当前神经科学中出现的数学创新的论坛。本期特刊汇集了5月30日至6月2日在科罗拉多州博尔德举行的2017年ICMNS上发表的最新研究和教程。会议讨论的主题包括网络活动的相关分析、可塑性突触的信息论、吸引子神经网络的组合学和神经科学的新数据同化方法——所有这些都将在本期特刊中有所介绍。
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引用次数: 0
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Journal of Mathematical Neuroscience
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