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The Dynamics of Neural Fields on Bounded Domains: An Interface Approach for Dirichlet Boundary Conditions. 有界域上神经场的动力学:Dirichlet边界条件的界面方法。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-10-26 DOI: 10.1186/s13408-017-0054-4
Aytül Gökçe, Daniele Avitabile, Stephen Coombes

Continuum neural field equations model the large-scale spatio-temporal dynamics of interacting neurons on a cortical surface. They have been extensively studied, both analytically and numerically, on bounded as well as unbounded domains. Neural field models do not require the specification of boundary conditions. Relatively little attention has been paid to the imposition of neural activity on the boundary, or to its role in inducing patterned states. Here we redress this imbalance by studying neural field models of Amari type (posed on one- and two-dimensional bounded domains) with Dirichlet boundary conditions. The Amari model has a Heaviside nonlinearity that allows for a description of localised solutions of the neural field with an interface dynamics. We show how to generalise this reduced but exact description by deriving a normal velocity rule for an interface that encapsulates boundary effects. The linear stability analysis of localised states in the interface dynamics is used to understand how spatially extended patterns may develop in the absence and presence of boundary conditions. Theoretical results for pattern formation are shown to be in excellent agreement with simulations of the full neural field model. Furthermore, a numerical scheme for the interface dynamics is introduced and used to probe the way in which a Dirichlet boundary condition can limit the growth of labyrinthine structures.

连续神经场方程模拟皮层表面上相互作用的神经元的大尺度时空动力学。它们在有界和无界领域上得到了广泛的分析和数值研究。神经场模型不需要指定边界条件。相对而言,很少有人注意到神经活动在边界上的强加,或者它在诱导模式状态中的作用。在这里,我们通过研究具有Dirichlet边界条件的Amari型(在一维和二维有界域上)神经场模型来纠正这种不平衡。Amari模型具有Heaviside非线性,允许描述具有界面动力学的神经场的局部解。我们展示了如何通过推导封装边界效应的界面的法向速度规则来推广这种简化但精确的描述。界面动力学中局部状态的线性稳定性分析用于理解在没有边界条件和存在边界条件下空间扩展模式如何发展。模式形成的理论结果与全神经场模型的模拟结果非常吻合。此外,引入了界面动力学的数值格式,并用于探讨Dirichlet边界条件如何限制迷宫结构的生长。
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引用次数: 7
Fundamental Limits of Forced Asynchronous Spiking with Integrate and Fire Dynamics. 强制异步尖峰脉冲与积分和火焰动力学的基本极限。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-10-11 DOI: 10.1186/s13408-017-0053-5
Anirban Nandi, Heinz Schättler, Jason T Ritt, ShiNung Ching
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引用次数: 0
Symmetries Constrain Dynamics in a Family of Balanced Neural Networks. 一类平衡神经网络的对称性约束动力学。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-10-10 DOI: 10.1186/s13408-017-0052-6
Andrea K Barreiro, J Nathan Kutz, Eli Shlizerman

We examine a family of random firing-rate neural networks in which we enforce the neurobiological constraint of Dale's Law-each neuron makes either excitatory or inhibitory connections onto its post-synaptic targets. We find that this constrained system may be described as a perturbation from a system with nontrivial symmetries. We analyze the symmetric system using the tools of equivariant bifurcation theory and demonstrate that the symmetry-implied structures remain evident in the perturbed system. In comparison, spectral characteristics of the network coupling matrix are relatively uninformative about the behavior of the constrained system.

我们研究了一类随机放电率神经网络,在这些神经网络中,我们执行了神经生物学上的戴尔定律约束——每个神经元在突触后目标上建立兴奋性或抑制性连接。我们发现这个约束系统可以被描述为一个非平凡对称性系统的扰动。我们利用等变分岔理论的工具分析了对称系统,并证明了对称隐含结构在扰动系统中仍然是明显的。相比之下,网络耦合矩阵的频谱特征对受约束系统的行为相对缺乏信息。
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引用次数: 2
An Analysis of Waves Underlying Grid Cell Firing in the Medial Enthorinal Cortex. 内皮层网格细胞放电的波分析。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-08-25 DOI: 10.1186/s13408-017-0051-7
Mayte Bonilla-Quintana, Kyle C A Wedgwood, Reuben D O'Dea, Stephen Coombes

Layer II stellate cells in the medial enthorinal cortex (MEC) express hyperpolarisation-activated cyclic-nucleotide-gated (HCN) channels that allow for rebound spiking via an [Formula: see text] current in response to hyperpolarising synaptic input. A computational modelling study by Hasselmo (Philos. Trans. R. Soc. Lond. B, Biol. Sci. 369:20120523, 2013) showed that an inhibitory network of such cells can support periodic travelling waves with a period that is controlled by the dynamics of the [Formula: see text] current. Hasselmo has suggested that these waves can underlie the generation of grid cells, and that the known difference in [Formula: see text] resonance frequency along the dorsal to ventral axis can explain the observed size and spacing between grid cell firing fields. Here we develop a biophysical spiking model within a framework that allows for analytical tractability. We combine the simplicity of integrate-and-fire neurons with a piecewise linear caricature of the gating dynamics for HCN channels to develop a spiking neural field model of MEC. Using techniques primarily drawn from the field of nonsmooth dynamical systems we show how to construct periodic travelling waves, and in particular the dispersion curve that determines how wave speed varies as a function of period. This exhibits a wide range of long wavelength solutions, reinforcing the idea that rebound spiking is a candidate mechanism for generating grid cell firing patterns. Importantly we develop a wave stability analysis to show how the maximum allowed period is controlled by the dynamical properties of the [Formula: see text] current. Our theoretical work is validated by numerical simulations of the spiking model in both one and two dimensions.

内侧内皮层(MEC)的第II层星状细胞表达超极化激活的环核苷酸门控(HCN)通道,该通道允许通过[Formula: see text]电流响应超极化突触输入产生反弹尖峰。哈塞尔莫(Philos)的一项计算模型研究。反式。r . Soc。Lond。B、生物。Sci. 369:20120523, 2013)表明,这种细胞的抑制网络可以支持周期行波,其周期由[公式:见文本]电流的动力学控制。Hasselmo提出,这些波可能是网格细胞产生的基础,并且沿背侧到腹侧轴共振频率的已知差异可以解释观察到的网格细胞放电场的大小和间隔。在这里,我们在一个允许分析可追溯性的框架内开发了一个生物物理峰值模型。我们将整合-激活神经元的简单性与HCN通道门控动力学的分段线性漫画相结合,开发了MEC的尖峰神经场模型。使用主要来自非光滑动力系统领域的技术,我们展示了如何构造周期行波,特别是色散曲线,它决定了波速如何作为周期的函数而变化。这显示了广泛的长波解决方案,加强了反弹尖峰是产生网格细胞放电模式的候选机制的想法。重要的是,我们开发了一种波稳定性分析,以显示最大允许周期是如何由[公式:见文本]电流的动态特性控制的。我们的理论工作得到了一维和二维脉冲模型数值模拟的验证。
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引用次数: 2
A Stochastic Version of the Jansen and Rit Neural Mass Model: Analysis and Numerics. Jansen和Rit神经质量模型的随机版本:分析和数值。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-08-08 DOI: 10.1186/s13408-017-0046-4
Markus Ableidinger, Evelyn Buckwar, Harald Hinterleitner

Neural mass models provide a useful framework for modelling mesoscopic neural dynamics and in this article we consider the Jansen and Rit neural mass model (JR-NMM). We formulate a stochastic version of it which arises by incorporating random input and has the structure of a damped stochastic Hamiltonian system with nonlinear displacement. We then investigate path properties and moment bounds of the model. Moreover, we study the asymptotic behaviour of the model and provide long-time stability results by establishing the geometric ergodicity of the system, which means that the system-independently of the initial values-always converges to an invariant measure. In the last part, we simulate the stochastic JR-NMM by an efficient numerical scheme based on a splitting approach which preserves the qualitative behaviour of the solution.

神经质量模型为模拟介观神经动力学提供了一个有用的框架,在本文中,我们考虑Jansen和Rit神经质量模型(JR-NMM)。我们提出了它的一个随机版本,它是由随机输入引起的,具有非线性位移的阻尼随机哈密顿系统的结构。然后我们研究了模型的路径属性和矩界。此外,我们研究了模型的渐近行为,并通过建立系统的几何遍历性提供了长期稳定性结果,这意味着系统-独立于初始值-总是收敛到一个不变测度。在最后一部分中,我们采用一种有效的数值格式来模拟随机JR-NMM,该格式基于分裂方法,保留了解的定性行为。
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引用次数: 33
Emergent Dynamical Properties of the BCM Learning Rule BCM学习规则的涌现动态特性
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-02-20 DOI: 10.1186/s13408-017-0044-6
Lawrence C. Udeigwe, P. Munro, G. Ermentrout
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引用次数: 14
Stable Control of Firing Rate Mean and Variance by Dual Homeostatic Mechanisms 用双稳态机制稳定控制射速均值和方差
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2017-01-17 DOI: 10.1186/s13408-017-0043-7
Jonathan J. Cannon, P. Miller
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引用次数: 18
A Theoretical Study on the Role of Astrocytic Activity in Neuronal Hyperexcitability by a Novel Neuron-Glia Mass Model 星形胶质细胞活动在神经元高兴奋性中的作用的新神经元-胶质细胞质量模型的理论研究
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2016-12-21 DOI: 10.1186/s13408-016-0042-0
A. Garnier, A. Vidal, H. Benali
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引用次数: 12
Ill-Posed Point Neuron Models. 不适定点神经元模型。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2016-12-01 Epub Date: 2016-04-30 DOI: 10.1186/s13408-016-0039-8
Bjørn Fredrik Nielsen, John Wyller

We show that point-neuron models with a Heaviside firing rate function can be ill posed. More specifically, the initial-condition-to-solution map might become discontinuous in finite time. Consequently, if finite precision arithmetic is used, then it is virtually impossible to guarantee the accurate numerical solution of such models. If a smooth firing rate function is employed, then standard ODE theory implies that point-neuron models are well posed. Nevertheless, in the steep firing rate regime, the problem may become close to ill posed, and the error amplification, in finite time, can be very large. This observation is illuminated by numerical experiments. We conclude that, if a steep firing rate function is employed, then minor round-off errors can have a devastating effect on simulations, unless proper error-control schemes are used.

我们证明了带有Heaviside发射速率函数的点神经元模型可以是病态的。更具体地说,初始条件到解映射可能在有限时间内不连续。因此,如果使用有限精度算法,则几乎不可能保证这些模型的精确数值解。如果使用平滑发射速率函数,则标准ODE理论意味着点神经元模型是良好定姿的。然而,在陡峭的发射速率范围内,问题可能变得接近病态,并且在有限时间内误差放大可能非常大。数值实验证实了这一观察结果。我们得出的结论是,如果采用陡峭的发射速率函数,那么除非使用适当的误差控制方案,否则微小的舍入误差会对模拟产生破坏性影响。
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引用次数: 6
Analytic Modeling of Neural Tissue: I. A Spherical Bidomain. 神经组织的解析建模:I.球面双域。
IF 2.3 4区 医学 Q1 Neuroscience Pub Date : 2016-12-01 Epub Date: 2016-09-09 DOI: 10.1186/s13408-016-0041-1
Benjamin L Schwartz, Munish Chauhan, Rosalind J Sadleir

Presented here is a model of neural tissue in a conductive medium stimulated by externally injected currents. The tissue is described as a conductively isotropic bidomain, i.e. comprised of intra and extracellular regions that occupy the same space, as well as the membrane that divides them, and the injection currents are described as a pair of source and sink points. The problem is solved in three spatial dimensions and defined in spherical coordinates [Formula: see text]. The system of coupled partial differential equations is solved by recasting the problem to be in terms of the membrane and a monodomain, interpreted as a weighted average of the intra and extracellular domains. The membrane and monodomain are defined by the scalar Helmholtz and Laplace equations, respectively, which are both separable in spherical coordinates. Product solutions are thus assumed and given through certain transcendental functions. From these electrical potentials, analytic expressions for current density are derived and from those fields the magnetic flux density is calculated. Numerical examples are considered wherein the interstitial conductivity is varied, as well as the limiting case of the problem simplifying to two dimensions due to azimuthal independence. Finally, future modeling work is discussed.

这里展示的是一个在导电介质中受外部注入电流刺激的神经组织模型。该组织被描述为导电各向同性双域,即由占据相同空间的细胞内和细胞外区域以及分隔它们的膜组成,注射电流被描述为一对源点和汇点。该问题在三维空间中求解,并在球坐标中定义[公式:见文本]。耦合偏微分方程系统通过将问题重新转换为膜和单域来解决,解释为细胞内和细胞外区域的加权平均值。膜和单畴分别由标量亥姆霍兹方程和拉普拉斯方程定义,它们在球坐标系中都是可分离的。因此,乘积解被假定并通过某些超越函数给出。根据这些电势,导出了电流密度的解析表达式,并根据这些场计算了磁通密度。考虑了间隙电导率变化的数值例子,以及由于方位无关性而简化为二维问题的极限情况。最后,对今后的建模工作进行了展望。
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引用次数: 3
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Journal of Mathematical Neuroscience
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