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COVID-19 lessons to protect populations against future pandemics by implementing PPPM principles in healthcare. 新冠肺炎经验教训,通过在医疗保健中实施PPPM原则来保护人口免受未来流行病的影响。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-14 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00331-7
Cuihong Tian, Lois Balmer, Xuerui Tan

The coronavirus disease 2019 (COVID-19) pandemic has continued for more than 3 years, placing a huge burden on society worldwide. Although the World Health Organization (WHO) has declared an end to COVID-19 as a Public Health Emergency of International Concern (PHEIC), it is still considered a global threat. Previously, there has been a long debate as to whether the COVID-19 emergency will eventually end or transform into a more common infectious disease from a PHEIC, and how should countries respond to similar pandemics in the future more time-efficiently and cost-effectively. We reviewed the past, middle and current situation of COVID-19 based on bibliometric analysis and epidemiological data. Thereby, the necessity is indicated to change the paradigm from reactive healthcare services to predictive, preventive and personalised medicine (PPPM) approach, in order to effectively protect populations against COVID-19 and any future pandemics. Corresponding measures are detailed in the article including the involvement of multi-professional expertise, application of artificial intelligence, rapid diagnostics and patient stratification, and effective protection, amongst other to be considered by advanced health policy.

2019冠状病毒病(新冠肺炎)大流行已持续3年多,给全球社会带来了巨大负担。尽管世界卫生组织(世界卫生组织)已宣布新冠肺炎结束为国际关注的突发公共卫生事件,但它仍然被视为全球威胁。此前,人们一直在争论新冠肺炎紧急情况是否最终会结束或从PHEIC转变为更常见的传染病,以及各国未来应如何更有效地应对类似的流行病。在文献计量分析和流行病学资料的基础上,回顾了新冠肺炎的过去、中期和现状。因此,有必要将模式从反应性医疗保健服务转变为预测性、预防性和个性化医疗(PPPM)方法,以有效保护人群免受新冠肺炎和任何未来流行病的影响。文章详细介绍了相应的措施,包括多专业专业知识的参与、人工智能的应用、快速诊断和患者分层以及有效的保护,以及高级卫生政策需要考虑的其他措施。
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引用次数: 1
Anatomic characteristics of shoulder based on MRI accurately predict incomplete rotator cuff injuries in patients: relevance for predictive, preventive, and personalized healthcare strategies. 基于MRI的肩部解剖特征可以准确预测患者的不完全肩袖损伤:与预测性、预防性和个性化医疗策略的相关性。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-13 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00333-5
Hangxing Wu, Zhijie Zuo, Yucong Li, Haoqiang Song, Wanyan Hu, Jingle Chen, Chao Xie, Lijun Lin

Background and pppm-related working hypothesis: In the diagnosis of incomplete rotator cuff injuries (IRCI), magnetic resonance imaging (MRI) and ultrasound examination often have false-positive and false-negative results, while arthroscopy is expensive, invasive, and complex. From the strategy of predictive, preventive, and personalized medicine (PPPM), shoulder anatomical characteristics based on MRI have been demonstrated to accurately predict IRCI and their clinical applicability for personalized prediction of IRCI.

Aims: This study aimed to develop and validate a nomogram based on anatomical features of the shoulder on MRI to identify IRCI for PPPM healthcare strategies.

Methods: The medical information of 257 patients undergoing preoperative MRI examination was retrospectively reviewed and served as the primary cohort. Partial-thickness rotator cuff tears (RCTs) and tendinopathy observed under arthroscopy were considered IRCI. Using logistic regression analyses and least absolute shrinkage and selection operator (LASSO), IRCI was identified among various preoperative factors containing shoulder MRI and clinical features. A nomogram was constructed and subjected to internal and external validations (80 patients).

Results: The following eight independent risk factors for IRCI were identified:AgeThe left injured sidesThe Goutallier classification of supraspinatus in oblique coronal positionThe Goutallier classification of supraspinatus in the axial positionAcromial thicknessAcromiohumeral distanceCoracohumeral distanceAbnormal acromioclavicular joint signalsThe nomogram accurately predicted IRCI in the development (C-index, 0.932 (95% CI, 0.891, 0.973)) and validation (C-index, 0.955 (95% CI, 0.918, 0.992)) cohorts. The calibration curve was consistent between the predicted IRCI probability and the actual IRCI ratio of the nomogram. The decision curve analysis and clinical impact curves demonstrated that the model had high clinical applicability.

Conclusions: Eight independent factors that accurately predicted IRCI were determined using MRI anatomical findings. These personalized factors can prevent unnecessary diagnostic interventions (e.g., arthroscopy) and can assist surgeons in implementing individualized clinical decisions in medical practice, thus addressing the goals of PPPM.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00333-5.

背景和pppm相关的工作假设:在不完全性肩袖损伤(IRCI)的诊断中,磁共振成像(MRI)和超声检查通常会有假阳性和假阴性的结果,而关节镜检查是昂贵、有创和复杂的。从预测性、预防性和个性化医学(PPPM)的策略来看,基于MRI的肩部解剖特征已被证明可以准确预测IRCI,并可用于个性化预测IRCI。目的:本研究旨在开发和验证基于MRI肩部解剖特征的列线图,以确定用于PPPM医疗策略的IRCI。方法:回顾性分析257例接受术前MRI检查的患者的医疗信息,并作为主要队列。关节镜下观察到的部分厚度肩袖撕裂(RCT)和腱病变被认为是IRCI。通过逻辑回归分析和最小绝对收缩选择算子(LASSO),在包括肩部MRI和临床特征在内的各种术前因素中确定了IRCI。结果:确定了以下8个IRCI的独立危险因素:年龄左侧损伤侧斜冠状位冈上肌的Gouchter分类轴位冈上肌体的Goucotter分类肩峰厚度肩峰距离距离肩锁关节异常信号诺模图准确预测了发育(C指数,0.932(95%CI,0.891,0.973))和验证(C指数:0.955(95%CI),0.918,0.992)队列中的IRCI。校准曲线在诺模图的预测IRCI概率和实际IRCI比率之间是一致的。决策曲线分析和临床影响曲线表明,该模型具有较高的临床适用性。结论:利用MRI解剖结果确定了准确预测IRCI的八个独立因素。这些个性化因素可以防止不必要的诊断干预(如关节镜检查),并可以帮助外科医生在医疗实践中实施个性化的临床决策,从而实现PPPM的目标。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00333-5。
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引用次数: 0
Genetically predicted the causal relationship between gut microbiota and infertility: bidirectional Mendelian randomization analysis in the framework of predictive, preventive, and personalized medicine. 基因预测肠道微生物群与不孕之间的因果关系:在预测、预防和个性化医学框架下的双向孟德尔随机化分析。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-07 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00332-6
Yujia Xi, Chenwei Zhang, Yiqian Feng, Shurui Zhao, Yukai Zhang, Guosheng Duan, Wei Wang, Jingqi Wang

Objective: Several studies have reported the association between gut microbiota and infertility; however, the causal association between them remains unclear. This study aimed to explore the causal relationship between gut microbiota and infertility and evaluate how specific gut microbiota can support early monitoring and prevention of infertility in the context of predictive, preventive, and personalized medicine (PPPM/3PM).

Methods: The gut microbiota GWAS data included 18,340 individuals. Female infertility (6481 cases and 68,969 controls) and male infertility data (680 cases and 72,799 controls) were obtained from the FinnGen consortium. The inverse variance weighting (IVW), MR-Egger, weighted median (WM), Cochran Q tests, MR-PRESSO, and leave-one-out were used as a supplement to Mendelian randomization (MR) results and sensitivity analysis.

Results: The results of MR analysis indicated a significant causal association between Eubacterium oxidoreducens (OR = 2.048, P = 0.008), Lactococcus (OR = 1.445, P = 0.042), Eubacterium ventriosum (OR = 0.436, P = 0.018), Eubacterium rectale (OR = 0.306, P = 0.002), and Ruminococcaceae NK4A214 (OR = 0.537, P = 0.045) and male infertility. Genetically predicted Eubacterium ventriosum (OR = 0.809, P = 0.018), Holdemania (OR = 0.836, P = 0.037), Lactococcus (OR = 0.867, P = 0.020), Ruminococcaceae NK4A214 (OR = 0.830, P < 0.050), Ruminococcus torques (OR = 0.739, P = 0.022), and Faecalibacterium (OR = 1.311, P = 0.007) were associated with female infertility. Sensitivity analysis did not detect heterogeneity and pleiotropy (P > 0.05).

Conclusions: Our results provided evidence for the causal relationship between some gut microbiota and male and female infertility. These findings might be valuable in providing personalized treatment options for preventing infertility and improving reproductive function by monitoring and regulating the gut microbiota of infertility patients in the context of PPPM. Moreover, detecting the abundance of microbiota in feces can support preventive and personalized strategies, which may benefit more infertility patients.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00332-6.

目的:一些研究报道了肠道微生物群与不孕之间的关系;然而,它们之间的因果关系尚不清楚。本研究旨在探索肠道微生物群与不孕不育之间的因果关系,并评估特定的肠道微生物群如何在预测、预防和个性化医学(PPPM/3PM)的背景下支持不孕不育的早期监测和预防。方法:肠道微生物群GWAS数据包括18340名个体。女性不育(6481例和68969例对照)和男性不育数据(680例和72799例对照)来自FinnGen联盟。反方差加权(IVW)、MR-Egger、加权中位数(WM)、Cochran Q检验、MR-PRESSO和留一检验被用作孟德尔随机化(MR)结果和敏感性分析的补充。结果:MR分析结果表明氧化真杆菌(OR = 2.048,P = 0.008),乳球菌(或 = 1.445,P = 0.042)、腹氏真杆菌(OR = 0.436,P = 0.018)、直肠真杆菌(OR = 0.306,P = 0.002)和瘤胃球菌科NK4A214(OR = 0.537,P = 0.045)和男性不育。基因预测的腹足真杆菌(OR = 0.809,P = 0.018),Holdemania(OR = 0.836,P = 0.037),乳球菌(或 = 0.867,P = 0.020)、瘤胃球菌科NK4A214(OR = 0.830,P P = 0.022)和粪杆菌(OR = 1.311,P = 0.007)与女性不育有关。敏感性分析未发现异质性和多效性(P > 结论:我们的研究结果为某些肠道微生物群与男性和女性不孕之间的因果关系提供了证据。这些发现可能有助于通过监测和调节PPPM背景下不孕患者的肠道微生物群,为预防不孕和改善生殖功能提供个性化的治疗选择。此外,检测粪便中微生物群的丰度可以支持预防性和个性化策略,这可能使更多不孕不育患者受益。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00332-6。
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引用次数: 0
Ubiquitinomics revealed disease- and stage-specific patterns relevant for the 3PM approach in human sigmoid colon cancers. 泛素经济学揭示了与人类乙状结肠癌3PM方法相关的疾病和阶段特异性模式。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-30 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00328-2
Hua Yang, Na Li, Liang Chen, Lei Zhou, Yuanchen Zhou, Jixiang Liu, Wenshuang Jia, Ruofei Chen, Junwen Su, Lamei Yang, Xiaoxia Gong, Xianquan Zhan
<p><strong>Objective: </strong>The patients with sigmoid colorectal cancer commonly show high mortality and poor prognosis. Increasing evidence has demonstrated that the ubiquitinated proteins and ubiquitination-mediated molecular pathways influence the growth and aggressiveness of colorectal cancer. It emphasizes the scientific merits of quantitative ubiquitinomics in human sigmoid colon cancer. We hypothesize that the ubiquitinome and ubiquitination-mediated pathway networks significantly differ in sigmoid colon cancers compared to controls, which offers the promise for in-depth insight into molecular mechanisms, discovery of effective therapeutic targets, and construction of reliable biomarkers in the framework of predictive, preventive, and personalized medicine (PPPM; 3P medicine).</p><p><strong>Methods: </strong>The first ubiquitinome analysis was performed with anti-K-ε-GG antibody beads (PTMScan ubiquitin remnant motif [K-ε-GG])-based label-free quantitative proteomics and bioinformatics to identify and quantify ubiquitination profiling between sigmoid colon cancer tissues and para-carcinoma tissues. A total of 100 human sigmoid colon cancer samples that included complete clinical information and the corresponding gene expression data were obtained from The Cancer Genome Atlas (TCGA). Ubiquitination was the main way of protein degradation; the relationships between differentially ubiquitinated proteins (DUPs) and their differently expressed genes (DEGs) and between DUPs and their differentially expressed proteins (DEPs) were analyzed between cancer tissues and control tissues. The overall survival of those DUPs was obtained with Kaplan-Meier method.</p><p><strong>Results: </strong>A total of 1249 ubiquitinated sites within 608 DUPs were identified in human sigmoid colon cancer tissues. KEGG pathway network analysis of these DUPs revealed 35 statistically significant signaling pathways, such as salmonella infection, glycolysis/gluconeogenesis, and ferroptosis. Gene Ontology (GO) analysis of 608 DUPs revealed that protein ubiquitination was involved in 98 biological processes, 64 cellular components, 51 molecule functions, and 26 immune system processes. Protein-protein interaction (PPI) network of 608 DUPs revealed multiple high-combined scores and co-expressed DUPs. The relationship analysis between DUPs and their DEGs found 4 types of relationship models, including DUP-up (increased ubiquitination level) and DEG-up (increased gene expression), DUP-up and DEG-down (decreased gene expression), DUP-down (decreased ubiquitination level) and DEG-up, and DUP-down and DEG-down. The relationship analysis between DUPs and their DEPs found 4 types of relationship models, including DUP-up and DEP-up (increased protein expression), DUP-up and DEP-down (decreased protein expression), DUP-down and DEP-up, and DUP-down and DEP-down. Survival analysis found 46 overall survival-related DUPs in sigmoid colon cancer, and the drug sensitivity of overall sur
目的:乙状结肠癌症患者死亡率高,预后差。越来越多的证据表明,泛素化蛋白和泛素化介导的分子途径影响癌症的生长和侵袭性。它强调了定量泛素在人类乙状结肠癌症中的科学价值。我们假设,与对照组相比,乙状结肠癌中的泛素酶和泛素化介导的通路网络显著不同,这为深入了解分子机制、发现有效的治疗靶点以及在预测、预防、,方法:首次用基于抗K-ε-GG抗体珠(PTMScan泛素残基序[K-εGG])的无标记定量蛋白质组学和生物信息学对乙状结肠癌症组织和癌旁组织的泛素化谱进行分析。从癌症基因组图谱(TCGA)获得总共100个人类乙状结肠癌症样本,这些样本包括完整的临床信息和相应的基因表达数据。泛素化是蛋白质降解的主要途径;分析了癌症组织和对照组织中差异泛素化蛋白(DUP)及其差异表达基因(DEG)之间以及DUP及其差异表达蛋白(DEP)之间的关系。这些DUP的总生存率通过Kaplan-Meier方法获得。结果:在人类乙状结肠癌症组织中,608个DUP中共鉴定出1249个泛素化位点。对这些DUP的KEGG通路网络分析揭示了35种具有统计学意义的信号通路,如沙门氏菌感染、糖酵解/糖异生和脱铁性贫血。对608个DUP的基因本体论(GO)分析显示,蛋白质泛素化参与了98个生物过程、64个细胞成分、51个分子功能和26个免疫系统过程。608个DUP的蛋白质-蛋白质相互作用(PPI)网络显示了多个高综合评分和共表达的DUP。DUP及其DEG之间的关系分析发现了4种类型的关系模型,包括DUP up(泛素化水平增加)和DEG up(基因表达增加)、DUP up和DEG down(基因表达减少)、DUP down(泛素素化水平降低)和DEG-up,以及DUP down和DEG-down。DUP和它们的DEP之间的关系分析发现了4种类型的关系模型,包括DUP向上和DEP向上(增加蛋白质表达)、DUP向上和DEP向下(减少蛋白质表达),DUP向下和DEP上,以及DUP下降和DEP下降。生存分析发现癌症乙状结肠中存在46个总体生存相关DUP,并确定了总体生存相关的DUP的药物敏感性。结论:本研究首次提供了人类乙状结肠癌症中差异泛素化蛋白质组学特征、泛素化参与的信号通路网络变化,以及蛋白泛素化及其基因表达和蛋白泛素表达之间的关系模型。它有望深入了解癌症的分子机制,并在3P医学的背景下发现有效的治疗靶点和生物标志物,用于患者分层、预测诊断、预后评估和个性化治疗。补充信息:在线版本包含补充材料,请访问10.1007/s13167-023-00328-2。
{"title":"Ubiquitinomics revealed disease- and stage-specific patterns relevant for the 3PM approach in human sigmoid colon cancers.","authors":"Hua Yang, Na Li, Liang Chen, Lei Zhou, Yuanchen Zhou, Jixiang Liu, Wenshuang Jia, Ruofei Chen, Junwen Su, Lamei Yang, Xiaoxia Gong, Xianquan Zhan","doi":"10.1007/s13167-023-00328-2","DOIUrl":"10.1007/s13167-023-00328-2","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Objective: &lt;/strong&gt;The patients with sigmoid colorectal cancer commonly show high mortality and poor prognosis. Increasing evidence has demonstrated that the ubiquitinated proteins and ubiquitination-mediated molecular pathways influence the growth and aggressiveness of colorectal cancer. It emphasizes the scientific merits of quantitative ubiquitinomics in human sigmoid colon cancer. We hypothesize that the ubiquitinome and ubiquitination-mediated pathway networks significantly differ in sigmoid colon cancers compared to controls, which offers the promise for in-depth insight into molecular mechanisms, discovery of effective therapeutic targets, and construction of reliable biomarkers in the framework of predictive, preventive, and personalized medicine (PPPM; 3P medicine).&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;The first ubiquitinome analysis was performed with anti-K-ε-GG antibody beads (PTMScan ubiquitin remnant motif [K-ε-GG])-based label-free quantitative proteomics and bioinformatics to identify and quantify ubiquitination profiling between sigmoid colon cancer tissues and para-carcinoma tissues. A total of 100 human sigmoid colon cancer samples that included complete clinical information and the corresponding gene expression data were obtained from The Cancer Genome Atlas (TCGA). Ubiquitination was the main way of protein degradation; the relationships between differentially ubiquitinated proteins (DUPs) and their differently expressed genes (DEGs) and between DUPs and their differentially expressed proteins (DEPs) were analyzed between cancer tissues and control tissues. The overall survival of those DUPs was obtained with Kaplan-Meier method.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;A total of 1249 ubiquitinated sites within 608 DUPs were identified in human sigmoid colon cancer tissues. KEGG pathway network analysis of these DUPs revealed 35 statistically significant signaling pathways, such as salmonella infection, glycolysis/gluconeogenesis, and ferroptosis. Gene Ontology (GO) analysis of 608 DUPs revealed that protein ubiquitination was involved in 98 biological processes, 64 cellular components, 51 molecule functions, and 26 immune system processes. Protein-protein interaction (PPI) network of 608 DUPs revealed multiple high-combined scores and co-expressed DUPs. The relationship analysis between DUPs and their DEGs found 4 types of relationship models, including DUP-up (increased ubiquitination level) and DEG-up (increased gene expression), DUP-up and DEG-down (decreased gene expression), DUP-down (decreased ubiquitination level) and DEG-up, and DUP-down and DEG-down. The relationship analysis between DUPs and their DEPs found 4 types of relationship models, including DUP-up and DEP-up (increased protein expression), DUP-up and DEP-down (decreased protein expression), DUP-down and DEP-up, and DUP-down and DEP-down. Survival analysis found 46 overall survival-related DUPs in sigmoid colon cancer, and the drug sensitivity of overall sur","PeriodicalId":54292,"journal":{"name":"Epma Journal","volume":"14 3","pages":"503-525"},"PeriodicalIF":6.5,"publicationDate":"2023-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439878/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10047705","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Growth hormone proteoformics atlas created to promote predictive, preventive, and personalized approach in overall management of pituitary neuroendocrine tumors. 创建生长激素蛋白形成图谱,以促进垂体神经内分泌肿瘤整体管理的预测性、预防性和个性化方法。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-27 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00329-1
Lamei Yang, Chunling Li, Tao Song, Xianquan Zhan

Human growth hormone (GH) is the indispensable hormone for the maintenance of normal physiological functions of the human body, including the growth, development, metabolism, and even immunoregulation. The GH is synthesized, secreted, and stored by somatotroph cells in adenohypophysis. Abnormal GH is associated with various GH-related diseases, such as acromegaly, dwarfism, diabetes, and cancer. Currently, some studies found there are dozens or even hundreds of GH proteoforms in tissue and serum as well as a series of GH-binding protein (GHBP) proteoforms and GH receptor (GHR) proteoforms were also identified. The structure-function relationship of protein hormone proteoforms is significantly important to reveal their overall physiological and pathophysiological mechanisms. We propose the use of proteoformics to study the relationship between every GH proteoform and different physiological/pathophysiological states to clarify the pathogenic mechanism of GH-related disease such as pituitary neuroendocrine tumor and conduct precise molecular classification to promote predictive preventive personalized medicine (PPPM / 3P medicine). This article reviews GH proteoformics in GH-related disease such as pituitary neuroendocrine tumor, which has the potential role to provide novel insight into pathogenic mechanism, discover novel therapeutic targets, identify effective GH proteoform biomarker for patient stratification, predictive diagnosis, and prognostic assessment, improve therapy method, and further accelerate the development of 3P medicine.

人体生长激素(GH)是维持人体正常生理功能所不可或缺的激素,包括生长、发育、代谢甚至免疫调节。生长激素由腺垂体中的生长激素细胞合成、分泌和储存。生长激素异常与各种生长激素相关疾病有关,如肢端肥大症、侏儒症、糖尿病和癌症。目前,一些研究发现,组织和血清中存在数十种甚至数百种GH蛋白形式,还鉴定出一系列GH结合蛋白(GHBP)和GH受体(GHR)蛋白形式。蛋白-激素蛋白形式的结构-功能关系对于揭示其整体生理和病理生理机制具有重要意义。我们建议使用蛋白形成学来研究每种GH蛋白形式与不同生理/病理生理状态之间的关系,以阐明垂体神经内分泌肿瘤等GH相关疾病的发病机制,并进行精确的分子分类,以促进预测性预防性个性化药物(PPPM/3P药物)。本文综述了生长激素蛋白在垂体神经内分泌肿瘤等生长激素相关疾病中的作用,该作用可能为深入了解发病机制、发现新的治疗靶点、确定有效的生长激素蛋白生物标志物用于患者分层、预测诊断和预后评估、改进治疗方法、,进一步加快3P医学的发展。
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引用次数: 0
Quality of life and cost-effectiveness of different breast cancer surgery procedures: a Markov decision tree-based approach in the framework of Predictive, Preventive, and Personalized Medicine. 不同乳腺癌症手术的生活质量和成本效益:预测、预防和个性化医学框架下基于马尔可夫决策树的方法。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-14 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00326-4
Hon-Yi Shi, Chiu-Hui Li, Yen-Chen Chen, Chong-Chi Chiu, Hao-Hsien Lee, Ming-Feng Hou

Purpose: Breast cancer is a complex disease with heterogeneous outcomes that may benefit from the implementation of Predictive, Preventive, and Personalized Medicine (PPPM/3PM) strategies. In this study, we aimed to explore the potential of PPPM approaches by investigating the 10-year trends in quality of life (QOL) and the cost-effectiveness of different types of surgeries for patients with breast cancer.

Methods: This prospective cohort study recruited 144 patients undergoing breast conserving surgery (BCS), 199 undergoing modified radical mastectomy (MRM), and 44 undergoing total mastectomy with transverse rectus abdominis myocutaneous flap (TRAMF) from three medical centers in Taiwan between June 2007 and June 2010.

Results: All patients exhibited a significant decrease in most QOL dimension scores from before surgery to 6 months postoperatively (p < 0.05); however, from postoperative year 1 to 2, improvement in most QOL dimension scores was significantly better in the TRAMF group than in the BCS and MRM groups (p < 0.05). At 2, 5, and 10 years after surgery, the patients' QOL remained stable. In the Markov decision tree model, the TRAMF group had higher total direct medical costs than the MRM and BCS groups (US$ 32,426, US$ 29,487, and US$ 28,561, respectively) and higher average QALYs gained (7.771, 6.773, and 7.385, respectively), with an incremental cost-utility ratio (ICUR) of US$ 2,944.39 and US$ 10,013.86 per QALY gained.

Conclusions: TRAMF appeared cost effective compared with BCS and MRM, and it has been proved with considerable QOL improvements in the framework of PPPM. Future studies should continue to explore the potential of PPPM approaches in breast cancer care. By incorporating predictive models, personalized treatment plans, and preventive strategies into routine clinical practice, we can further optimize patient outcomes and reduce healthcare costs associated with breast cancer treatment.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00326-4.

目的:癌症是一种具有异质性结果的复杂疾病,可能受益于预测、预防和个性化医学(PPPM/3PM)策略的实施。在这项研究中,我们旨在通过调查癌症患者生活质量(QOL)的10年趋势和不同类型手术的成本效益,来探索PPPM方法的潜力。方法:这项前瞻性队列研究招募了144名接受保乳手术(BCS)的患者、199名接受改良乳房切除术(MRM)的患者,2007年6月至2010年6月,台湾三家医疗中心的44例患者接受了腹直肌肌皮瓣(TRAMF)全乳房切除术 p 结论:与BCS和MRM相比,TRAMF似乎具有成本效益,并且在PPPM的框架下,它的生活质量得到了显著改善。未来的研究应继续探索PPPM方法在癌症治疗中的潜力。通过将预测模型、个性化治疗计划和预防策略纳入常规临床实践,我们可以进一步优化患者结果,降低与癌症治疗相关的医疗成本。补充信息:在线版本包含补充材料,请访问10.1007/s13167-023-00326-4。
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引用次数: 0
Mechanical power normalized to aerated lung predicts noninvasive ventilation failure and death and contributes to the benefits of proning in COVID-19 hypoxemic respiratory failure. 机械功率归一化到通气肺可预测无创通气失败和死亡,并有助于预防COVID-19低氧性呼吸衰竭。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-10 DOI: 10.1007/s13167-023-00325-5
Giovanni Musso, Claudio Taliano, Marco De Iuliis, Elena Paschetta, Caterina Fonti, Andrea Ferraris, Marta Druetta, Ines Sarah Vianou, Francesca Ranghino, Federica Riedo, Davide Deangelis, Gloria Tirabassi
<p><strong>Background: </strong>Concern exists that noninvasive ventilation (NIV) may promote ventilation-induced lung injury(VILI) and worsen outcome in acute hypoxemic respiratory failure (AHRF). Different individual ventilatory variables have been proposed to predict clinical outcomes, with inconsistent results.Mechanical power (MP), a measure of the energy transfer rate from the ventilator to the respiratory system during mechanical ventilation, might provide solutions for this issue in the framework of predictive, preventive and personalized medicine (PPPM). We explored (1) the impact of ventilator-delivered MP normalized to well-aerated lung (MP<sub>WAL</sub>) on physio-anatomical and clinical responses to NIV in COVID-19-related AHRF and (2) the effect of prone position(PP) on MP<sub>WAL</sub>.</p><p><strong>Methods: </strong>We analyzed 216 noninvasively ventilated COVID-19 patients (108 patients receiving PP + NIV and 108 propensity score-matched patients receiving supine NIV) with moderate-to-severe(paO2/FiO2 ratio < 200) AHRF enrolled in the PRO-NIV controlled non-randomized study (ISRCTN23016116).Quantification of differentially aerated lung volumes by lung ultrasonography (LUS) was validated against CT scans. Respiratory parameters were hourly recorded, ABG were performed 1 h after each postural change. Time-weighed average values of ventilatory variables, including MP<sub>WAL</sub>, and gas exchange parameters (paO2/FiO2 ratio, dead space indices) were calculated for each ventilatory session. LUS and circulating biomarkers were assessed daily.</p><p><strong>Results: </strong>Compared with supine position, PP was associated with a 34% MP<sub>WAL</sub> reduction, attributable largely to an absolute MP reduction and secondly to an enhanced lung reaeration.Patients receiving a high MP<sub>WAL</sub> during the 1<sup>st</sup> 24 h of NIV [MP<sub>WAL</sub>(day 1)] had higher 28-d NIV failure (HR = 4.33,95%CI:3.09 - 5.98) and death (HR = 5.17,95%CI: 3.01 - 7.35) risks than those receiving a low MP<sub>WAL</sub>(day 1).In Cox multivariate analyses, MP<sub>WAL</sub>(day 1) remained independently associated with 28-d NIV failure (HR = 1.68,95%CI:1.15-2.41) and death (HR = 1.69,95%CI:1.22-2.32).MP<sub>WAL</sub>(day 1) outperformed other power measures and ventilatory variables as predictor of 28-d NIV failure (AUROC = 0.89;95%CI:0.85-0.93) and death (AUROC = 0.89;95%CI:0.85-0.94).MP<sub>WAL</sub>(day 1) predicted also gas exchange, ultrasonographic and inflammatory biomarker responses, as markers of VILI, on linear multivariate analysis.</p><p><strong>Conclusions: </strong>In the framework of PPPM, early bedside MP<sub>WAL</sub> calculation may provide added value to predict response to NIV and guide subsequent therapeutic choices i.e. prone position adoption during NIV or upgrading to invasive ventilation, to reduce hazardous MP<sub>WAL</sub> delivery, prevent VILI progression and improve clinical outcomes in COVID-19-related AHRF.</p><p><stro
背景:人们担心无创通气(NIV)可能会促进通气性肺损伤(VILI)并恶化急性低氧性呼吸衰竭(AHRF)的预后。不同的个体通气变量被用来预测临床结果,但结果不一致。机械功率(MP)是衡量机械通气过程中从呼吸机到呼吸系统的能量传递速率的指标,可能在预测性、预防性和个性化医学(PPPM)框架下为这一问题提供解决方案。我们探讨了(1)呼吸机输送的正常通气肺(MPWAL)对covid -19相关AHRF患者对NIV的生理解剖和临床反应的影响;(2)俯卧位(PP)对MPWAL的影响。方法:对216例中重度(paO2/FiO2比WAL)无创通气的COVID-19患者(108例PP + NIV和108例倾向评分匹配的仰卧NIV)进行分析,计算每次通气的气体交换参数(paO2/FiO2比、死腔指数)。每天评估LUS和循环生物标志物。结果:与仰卧位相比,俯卧位与34%的MPWAL降低相关,主要归因于绝对MP降低,其次是肺再生增强。在NIV的前24小时接受高MPWAL [MPWAL(第1天)]的患者比接受低MPWAL(第1天)的患者有更高的28天NIV失败(HR = 4.33,95%CI:3.09 - 5.98)和死亡(HR = 5.17,95%CI: 3.01 - 7.35)的风险。Cox多因素分析显示,MPWAL(第1天)仍然与28天NIV失败(HR = 1.68,95%CI:1.15-2.41)和死亡(HR = 1.69,95%CI:1.22-2.32)独立相关。MPWAL(第1天)优于其他功率测量和通气变量作为28天NIV失效(AUROC = 0.89;95%CI:0.85-0.93)和死亡(AUROC = 0.89;95%CI:0.85-0.94)的预测因子。在线性多变量分析中,MPWAL(第1天)还预测了气体交换、超声和炎症生物标志物反应,作为VILI的标志物。结论:在PPPM框架下,早期床边MPWAL计算可为预测无创通气反应提供附加价值,并指导后续治疗选择,如在无创通气期间采用俯卧位或升级到有创通气,以减少危险的MPWAL输出,防止VILI进展,改善covid -19相关AHRF的临床结果。补充信息:在线版本包含补充资料,下载地址:10.1007/s13167-023-00325-5。
{"title":"Mechanical power normalized to aerated lung predicts noninvasive ventilation failure and death and contributes to the benefits of proning in COVID-19 hypoxemic respiratory failure.","authors":"Giovanni Musso,&nbsp;Claudio Taliano,&nbsp;Marco De Iuliis,&nbsp;Elena Paschetta,&nbsp;Caterina Fonti,&nbsp;Andrea Ferraris,&nbsp;Marta Druetta,&nbsp;Ines Sarah Vianou,&nbsp;Francesca Ranghino,&nbsp;Federica Riedo,&nbsp;Davide Deangelis,&nbsp;Gloria Tirabassi","doi":"10.1007/s13167-023-00325-5","DOIUrl":"https://doi.org/10.1007/s13167-023-00325-5","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;Concern exists that noninvasive ventilation (NIV) may promote ventilation-induced lung injury(VILI) and worsen outcome in acute hypoxemic respiratory failure (AHRF). Different individual ventilatory variables have been proposed to predict clinical outcomes, with inconsistent results.Mechanical power (MP), a measure of the energy transfer rate from the ventilator to the respiratory system during mechanical ventilation, might provide solutions for this issue in the framework of predictive, preventive and personalized medicine (PPPM). We explored (1) the impact of ventilator-delivered MP normalized to well-aerated lung (MP&lt;sub&gt;WAL&lt;/sub&gt;) on physio-anatomical and clinical responses to NIV in COVID-19-related AHRF and (2) the effect of prone position(PP) on MP&lt;sub&gt;WAL&lt;/sub&gt;.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;We analyzed 216 noninvasively ventilated COVID-19 patients (108 patients receiving PP + NIV and 108 propensity score-matched patients receiving supine NIV) with moderate-to-severe(paO2/FiO2 ratio &lt; 200) AHRF enrolled in the PRO-NIV controlled non-randomized study (ISRCTN23016116).Quantification of differentially aerated lung volumes by lung ultrasonography (LUS) was validated against CT scans. Respiratory parameters were hourly recorded, ABG were performed 1 h after each postural change. Time-weighed average values of ventilatory variables, including MP&lt;sub&gt;WAL&lt;/sub&gt;, and gas exchange parameters (paO2/FiO2 ratio, dead space indices) were calculated for each ventilatory session. LUS and circulating biomarkers were assessed daily.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;Compared with supine position, PP was associated with a 34% MP&lt;sub&gt;WAL&lt;/sub&gt; reduction, attributable largely to an absolute MP reduction and secondly to an enhanced lung reaeration.Patients receiving a high MP&lt;sub&gt;WAL&lt;/sub&gt; during the 1&lt;sup&gt;st&lt;/sup&gt; 24 h of NIV [MP&lt;sub&gt;WAL&lt;/sub&gt;(day 1)] had higher 28-d NIV failure (HR = 4.33,95%CI:3.09 - 5.98) and death (HR = 5.17,95%CI: 3.01 - 7.35) risks than those receiving a low MP&lt;sub&gt;WAL&lt;/sub&gt;(day 1).In Cox multivariate analyses, MP&lt;sub&gt;WAL&lt;/sub&gt;(day 1) remained independently associated with 28-d NIV failure (HR = 1.68,95%CI:1.15-2.41) and death (HR = 1.69,95%CI:1.22-2.32).MP&lt;sub&gt;WAL&lt;/sub&gt;(day 1) outperformed other power measures and ventilatory variables as predictor of 28-d NIV failure (AUROC = 0.89;95%CI:0.85-0.93) and death (AUROC = 0.89;95%CI:0.85-0.94).MP&lt;sub&gt;WAL&lt;/sub&gt;(day 1) predicted also gas exchange, ultrasonographic and inflammatory biomarker responses, as markers of VILI, on linear multivariate analysis.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Conclusions: &lt;/strong&gt;In the framework of PPPM, early bedside MP&lt;sub&gt;WAL&lt;/sub&gt; calculation may provide added value to predict response to NIV and guide subsequent therapeutic choices i.e. prone position adoption during NIV or upgrading to invasive ventilation, to reduce hazardous MP&lt;sub&gt;WAL&lt;/sub&gt; delivery, prevent VILI progression and improve clinical outcomes in COVID-19-related AHRF.&lt;/p&gt;&lt;p&gt;&lt;stro","PeriodicalId":54292,"journal":{"name":"Epma Journal","volume":" ","pages":"1-39"},"PeriodicalIF":6.5,"publicationDate":"2023-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10256581/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10676757","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and validation of a routine blood parameters-based model for screening the occurrence of retinal detachment in high myopia in the context of PPPM. 基于常规血液参数的PPPM高度近视视网膜脱离筛查模型的建立与验证。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-01 DOI: 10.1007/s13167-023-00319-3
Shengjie Li, Meiyan Li, Jianing Wu, Yingzhu Li, Jianping Han, Wenjun Cao, Xingtao Zhou
<p><strong>Background/aims: </strong>Timely detection and treatment of retinal detachment (RD) could effectively save vision and reduce the risk of progressing visual field defects. High myopia (HM) is known to be associated with an increased risk of RD. Evidently, it should be clearly discriminated the individuals with high or low risk of RD in patients with HM. By using multi-parametric analysis, risk assessment, and other techniques, it is crucial to create cutting-edge screening programs that may be utilized to improve population eye health and develop person-specific, cost-effective preventative, and targeted therapeutic measures. Therefore, we propose a novel, routine blood parameters-based prediction model as a screening program to help distinguish who should offer detailed ophthalmic examinations for RD diagnosis, prevent visual field defect progression, and provide personalized, serial monitoring in the context of predictive, preventive, and personalized medicine (PPPM/3 PM).</p><p><strong>Methods: </strong>This population-based study included 20,870 subjects (HM = 19,284, HMRD = 1586) who underwent detailed routine blood tests and ophthalmic evaluations. HMRD cases and HM controls were matched using a nested case-control design. Then, the HMRD cases and HM controls were randomly assigned to the discovery cohort, validation cohort 1, and validation cohort 2 maintaining a 6:2:2 ratio, and other subjects were assigned to the HM validation cohort. Receiver operating characteristic curve analysis was performed to select feature indexes. Feature indexes were integrated into seven algorithm models, and an optimal model was selected based on the highest area under the curve (AUC) and accuracy.</p><p><strong>Results: </strong>Six feature indexes were selected: lymphocyte, basophil, mean platelet volume, platelet distribution width, neutrophil-to-lymphocyte ratio, and lymphocyte-to-monocyte ratio. Among the algorithm models, the algorithm of conditional probability (ACP) showed the best performance achieving an AUC of 0.79, a diagnostic accuracy of 0.72, a sensitivity of 0.71, and a specificity of 0.74 in the discovery cohort. A good performance of the ACP model was also observed in the validation cohort 1 (AUC = 0.81, accuracy = 0.72, sensitivity = 0.71, specificity = 0.73) and validation cohort 2 (AUC = 0.77, accuracy = 0.71, sensitivity = 0.70, specificity = 0.72). In addition, ACP model calibration was found to be good across three cohorts. In the HM validation cohort, the ACP model achieved a diagnostic accuracy of 0.81 for negative classification.</p><p><strong>Conclusion: </strong>We have developed a routine blood parameters-based model with an ACP algorithm that could potentially be applied in the clinic with a PPPM approach for serial monitoring and predicting the occurrence of RD in HM and can facilitate the prevention of HM progression to RD. According to the current study, routine blood measures are essential in patient risk classific
背景/目的:及时发现和治疗视网膜脱离(retinal detachment, RD)可有效挽救视力,降低进展性视野缺损的风险。高度近视(HM)与RD的风险增加有关,因此在HM患者中应明确区分RD的高低风险个体。通过使用多参数分析、风险评估和其他技术,创建可用于改善人群眼睛健康和开发针对个人的、具有成本效益的预防和有针对性的治疗措施的尖端筛查项目至关重要。因此,我们提出了一种新的、基于常规血液参数的预测模型作为筛查方案,以帮助区分谁应该提供详细的眼科检查来诊断RD,防止视野缺损进展,并在预测、预防和个性化医疗(PPPM/ 3pm)的背景下提供个性化的、连续的监测。方法:这项以人群为基础的研究包括20,870名受试者(HM = 19,284, HMRD = 1586),他们接受了详细的常规血液检查和眼科检查。HMRD病例和HM对照使用嵌套病例-对照设计进行匹配。然后,将HMRD病例和HM对照随机分配到发现队列、验证队列1和验证队列2,并保持6:2:2的比例,其余受试者被分配到HM验证队列。进行受试者工作特征曲线分析,选择特征指标。将特征指标整合到7个算法模型中,根据最高曲线下面积(AUC)和准确率选择最优模型。结果:选取淋巴细胞、嗜碱性粒细胞、平均血小板体积、血小板分布宽度、中性粒细胞与淋巴细胞比值、淋巴细胞与单核细胞比值6项特征指标。在这些算法模型中,条件概率(ACP)算法表现出最好的性能,在发现队列中,AUC为0.79,诊断准确率为0.72,灵敏度为0.71,特异性为0.74。ACP模型在验证队列1 (AUC = 0.81,准确性= 0.72,灵敏度= 0.71,特异性= 0.73)和验证队列2 (AUC = 0.77,准确性= 0.71,灵敏度= 0.70,特异性= 0.72)中也表现良好。此外,发现ACP模型校准在三个队列中都是良好的。在HM验证队列中,ACP模型对阴性分类的诊断准确率为0.81。结论:我们开发了一种基于常规血液参数的ACP算法模型,该模型有可能应用于临床,通过PPPM方法连续监测和预测HM中RD的发生,并有助于预防HM进展为RD。根据目前的研究,常规血液测量在患者风险分类、预测诊断和靶向治疗中至关重要。因此,对于高风险RD患者来说,新的筛查方案和及时的治疗计划对于提高个人预后和为HM患者提供的医疗保健至关重要。补充信息:在线版本包含补充资料,下载地址:10.1007/s13167-023-00319-3。
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引用次数: 0
Identification of potential necroinflammation-associated necroptosis-related biomarkers for delayed graft function and renal allograft failure: a machine learning-based exploration in the framework of predictive, preventive, and personalized medicine. 识别潜在的坏死性炎症相关坏死性坏死相关的生物标志物延迟移植功能和肾移植失败:在预测、预防和个性化医学框架下的基于机器学习的探索。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-01 DOI: 10.1007/s13167-023-00320-w
Qing Bi, Ji-Yue Wu, Xue-Meng Qiu, Yu-Qing Li, Yu-Yao Yan, Ze-Jia Sun, Wei Wang

Delayed graft function (DGF) is one of the key post-operative challenges for a subset of kidney transplantation (KTx) patients. Graft survival is significantly lower in recipients who have experienced DGF than in those who have not. Assessing the risk of chronic graft injury, predicting graft rejection, providing personalized treatment, and improving graft survival are major strategies for predictive, preventive, and personalized medicine (PPPM/3PM) to promote the development of transplant medicine. However, since PPPM aims to accurately identify disease by integrating multiple omics, current methods to predict DGF and graft survival can still be improved. Renal ischemia/reperfusion injury (IRI) is a pathological process experienced by all KTx recipients that can result in varying occurrences of DGF, chronic rejection, and allograft failure depending on its severity. During this process, a necroinflammation-mediated necroptosis-dependent secondary wave of cell death significantly contributes to post-IRI tubular cell loss. In this article, we obtained the expression matrices and corresponding clinical data from the GEO database. Subsequently, nine differentially expressed necroinflammation-associated necroptosis-related genes (NiNRGs) were identified by correlation and differential expression analysis. The subtyping of post-KTx IRI samples relied on consensus clustering; the grouping of prognostic risks and the construction of predictive models for DGF (the area under the receiver operating characteristic curve (AUC) of the internal validation set and the external validation set were 0.730 and 0.773, respectively) and expected graft survival after a biopsy (the internal validation set's 1-year AUC: 0.770; 2-year AUC: 0.702; and 3-year AUC: 0.735) were based on the least absolute shrinkage and selection operator regression algorithms. The results of the immune infiltration analysis showed a higher infiltration abundance of myeloid immune cells, especially neutrophils, macrophages, and dendritic cells, in the cluster A subtype and prognostic high-risk groups. Therefore, in the framework of PPPM, this work provides a comprehensive exploration of the early expression landscape, related pathways, immune features, and prognostic impact of NiNRGs in post-KTx patients and assesses their capabilities as.predictors of post-KTx DGF and graft loss,targets of the vicious loop between regulated tubular cell necrosis and necroinflammation for targeted secondary and tertiary prevention, andreferences for personalized immunotherapy.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00320-w.

延迟移植功能(DGF)是肾移植(KTx)患者的一个关键的术后挑战。经历过DGF的受者的移植物存活率明显低于没有经历过DGF的受者。评估移植物慢性损伤风险,预测移植物排斥反应,提供个性化治疗,提高移植物存活率是预测性、预防性和个性化医学(PPPM/3PM)促进移植医学发展的主要策略。然而,由于PPPM旨在通过整合多个组学来准确识别疾病,目前预测DGF和移植物存活的方法仍然可以改进。肾缺血/再灌注损伤(IRI)是所有KTx受体都会经历的病理过程,可导致不同程度的DGF、慢性排斥反应和同种异体移植失败。在这一过程中,坏死炎症介导的依赖于坏死凋亡的细胞死亡的第二波显著地促进了iri后小管细胞的损失。在本文中,我们从GEO数据库中获得了表达矩阵和相应的临床数据。随后,通过相关性和差异表达分析,鉴定出9个差异表达的坏死性炎症相关坏死性坏死相关基因(NiNRGs)。ktx后IRI样本的分型依赖于一致聚类;DGF(内部验证集和外部验证集的受者工作特征曲线下面积(AUC)分别为0.730和0.773)和活检后预期移植物存活(内部验证集的1年AUC: 0.770;2年AUC: 0.702;和3年AUC: 0.735)基于最小绝对收缩和选择算子回归算法。免疫浸润分析结果显示,在a群亚型和预后高危人群中,髓系免疫细胞,特别是中性粒细胞、巨噬细胞和树突状细胞浸润丰度较高。因此,在PPPM的框架下,本研究全面探索了NiNRGs在ktx后患者中的早期表达格局、相关途径、免疫特征和预后影响,并评估了它们作为预后因子的能力。ktx后DGF和移植物损失的预测因子,二级和三级预防中调控小管细胞坏死和坏死炎症恶性循环的目标,以及个性化免疫治疗的参考。补充信息:在线版本包含补充资料,提供地址:10.1007/s13167-023-00320-w。
{"title":"Identification of potential necroinflammation-associated necroptosis-related biomarkers for delayed graft function and renal allograft failure: a machine learning-based exploration in the framework of predictive, preventive, and personalized medicine.","authors":"Qing Bi,&nbsp;Ji-Yue Wu,&nbsp;Xue-Meng Qiu,&nbsp;Yu-Qing Li,&nbsp;Yu-Yao Yan,&nbsp;Ze-Jia Sun,&nbsp;Wei Wang","doi":"10.1007/s13167-023-00320-w","DOIUrl":"https://doi.org/10.1007/s13167-023-00320-w","url":null,"abstract":"<p><p>Delayed graft function (DGF) is one of the key post-operative challenges for a subset of kidney transplantation (KTx) patients. Graft survival is significantly lower in recipients who have experienced DGF than in those who have not. Assessing the risk of chronic graft injury, predicting graft rejection, providing personalized treatment, and improving graft survival are major strategies for predictive, preventive, and personalized medicine (PPPM/3PM) to promote the development of transplant medicine. However, since PPPM aims to accurately identify disease by integrating multiple omics, current methods to predict DGF and graft survival can still be improved. Renal ischemia/reperfusion injury (IRI) is a pathological process experienced by all KTx recipients that can result in varying occurrences of DGF, chronic rejection, and allograft failure depending on its severity. During this process, a necroinflammation-mediated necroptosis-dependent secondary wave of cell death significantly contributes to post-IRI tubular cell loss. In this article, we obtained the expression matrices and corresponding clinical data from the GEO database. Subsequently, nine differentially expressed necroinflammation-associated necroptosis-related genes (NiNRGs) were identified by correlation and differential expression analysis. The subtyping of post-KTx IRI samples relied on consensus clustering; the grouping of prognostic risks and the construction of predictive models for DGF (the area under the receiver operating characteristic curve (AUC) of the internal validation set and the external validation set were 0.730 and 0.773, respectively) and expected graft survival after a biopsy (the internal validation set's 1-year AUC: 0.770; 2-year AUC: 0.702; and 3-year AUC: 0.735) were based on the least absolute shrinkage and selection operator regression algorithms. The results of the immune infiltration analysis showed a higher infiltration abundance of myeloid immune cells, especially neutrophils, macrophages, and dendritic cells, in the cluster A subtype and prognostic high-risk groups. Therefore, in the framework of PPPM, this work provides a comprehensive exploration of the early expression landscape, related pathways, immune features, and prognostic impact of NiNRGs in post-KTx patients and assesses their capabilities as.predictors of post-KTx DGF and graft loss,targets of the vicious loop between regulated tubular cell necrosis and necroinflammation for targeted secondary and tertiary prevention, andreferences for personalized immunotherapy.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s13167-023-00320-w.</p>","PeriodicalId":54292,"journal":{"name":"Epma Journal","volume":"14 2","pages":"307-328"},"PeriodicalIF":6.5,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10141843/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9584953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Multi-faceted CRISPR/Cas technological innovation aspects in the framework of 3P medicine. 3P医学框架下多方面的CRISPR/Cas技术创新方面。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-01 DOI: 10.1007/s13167-023-00324-6
Vincent Lučanský, Veronika Holubeková, Zuzana Kolková, Erika Halašová, Marek Samec, Olga Golubnitschaja

Since 2009, the European Association for Predictive, Preventive and Personalised Medicine (EPMA, Brussels) promotes the paradigm change from reactive approach to predictive, preventive, and personalized medicine (PPPM/3PM) to protect individuals in sub-optimal health conditions from the health-to-disease transition, to increase life-quality of the affected patient cohorts improving, therefore, ethical standards and cost-efficacy of healthcare to great benefits of the society at large. The gene-editing technology utilizing CRISPR/Cas gene-editing approach has demonstrated its enormous value as a powerful tool in a broad spectrum of bio/medical research areas. Further, CRISPR/Cas gene-editing system is considered applicable to primary and secondary healthcare, in order to prevent disease spread and to treat clinically manifested disorders, involving diagnostics of SARS-Cov-2 infection and experimental treatment of COVID-19. Although the principle of the proposed gene editing is simple and elegant, there are a lot of technological challenges and ethical considerations to be solved prior to its broadly scaled clinical implementation. This article highlights technological innovation beyond the state of the art, exemplifies current achievements, discusses unsolved technological and ethical problems, and provides clinically relevant outlook in the framework of 3PM.

自2009年以来,欧洲预测、预防和个性化医学协会(EPMA,布鲁塞尔)推动从被动方法到预测、预防和个性化医学(PPPM/3PM)的范式转变,以保护处于次优健康状况的个人免受健康向疾病过渡的影响,提高受影响患者群体的生活质量,从而提高医疗保健的道德标准和成本效益,使整个社会受益。利用CRISPR/Cas基因编辑方法的基因编辑技术作为一种强大的工具,在广泛的生物/医学研究领域展示了其巨大的价值。此外,CRISPR/Cas基因编辑系统被认为适用于一级和二级医疗保健,以预防疾病传播和治疗临床表现障碍,涉及SARS-Cov-2感染的诊断和COVID-19的实验性治疗。虽然拟议的基因编辑的原理简单而优雅,但在其广泛的临床应用之前,仍有许多技术挑战和伦理问题需要解决。这篇文章强调了超越艺术状态的技术创新,举例说明了当前的成就,讨论了未解决的技术和伦理问题,并在3PM的框架内提供了临床相关的前景。
{"title":"Multi-faceted CRISPR/Cas technological innovation aspects in the framework of 3P medicine.","authors":"Vincent Lučanský,&nbsp;Veronika Holubeková,&nbsp;Zuzana Kolková,&nbsp;Erika Halašová,&nbsp;Marek Samec,&nbsp;Olga Golubnitschaja","doi":"10.1007/s13167-023-00324-6","DOIUrl":"https://doi.org/10.1007/s13167-023-00324-6","url":null,"abstract":"<p><p>Since 2009, the European Association for Predictive, Preventive and Personalised Medicine (EPMA, Brussels) promotes the paradigm change from reactive approach to predictive, preventive, and personalized medicine (PPPM/3PM) to protect individuals in sub-optimal health conditions from the health-to-disease transition, to increase life-quality of the affected patient cohorts improving, therefore, ethical standards and cost-efficacy of healthcare to great benefits of the society at large. The gene-editing technology utilizing CRISPR/Cas gene-editing approach has demonstrated its enormous value as a powerful tool in a broad spectrum of bio/medical research areas. Further, CRISPR/Cas gene-editing system is considered applicable to primary and secondary healthcare, in order to prevent disease spread and to treat clinically manifested disorders, involving diagnostics of SARS-Cov-2 infection and experimental treatment of COVID-19. Although the principle of the proposed gene editing is simple and elegant, there are a lot of technological challenges and ethical considerations to be solved prior to its broadly scaled clinical implementation. This article highlights technological innovation beyond the state of the art, exemplifies current achievements, discusses unsolved technological and ethical problems, and provides clinically relevant outlook in the framework of 3PM.</p>","PeriodicalId":54292,"journal":{"name":"Epma Journal","volume":"14 2","pages":"201-217"},"PeriodicalIF":6.5,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10201107/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9587934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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