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Machine learning-couched treatment algorithms tailored to individualized profile of patients with primary anterior chamber angle closure predisposed to the glaucomatous optic neuropathy. 机器学习提出了针对易患青光眼性视神经病变的原发性前房角闭合患者的个性化特征的治疗算法。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-08-17 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00337-1
Natalia I Kurysheva, Oxana Y Rodionova, Alexey L Pomerantsev, Galina A Sharova, Olga Golubnitschaja

Background: Primary angle closure glaucoma (PACG) is still one of the leading causes of irreversible blindness, with a trend towards an increase in the number of patients to 32.04 million by 2040, an increase of 58.4% compared with 2013. Health risk assessment based on multi-level diagnostics and machine learning-couched treatment algorithms tailored to individualized profile of patients with primary anterior chamber angle closure are considered essential tools to reverse the trend and protect vulnerable subpopulations against health-to-disease progression.

Aim: To develop a methodology for personalized choice of an effective method of primary angle closure (PAC) treatment based on comparing the prognosis of intraocular pressure (IOP) changes due to laser peripheral iridotomy (LPI) or lens extraction (LE).

Methods: The multi-parametric data analysis was used to develop models predicting individual outcomes of the primary angle closure (PAC) treatment with LPI and LE. For doing this, we suggested a positive dynamics in the intraocular pressure (IOP) after treatment, as the objective measure of a successful treatment. Thirty-seven anatomical parameters have been considered by applying artificial intelligence to the prospective study on 30 (LE) + 30 (LPI) patients with PAC.

Results and data interpretation in the framework of 3p medicine: Based on the anatomical and topographic features of the patients with PAC, mathematical models have been developed that provide a personalized choice of LE or LPI in the treatment. Multi-level diagnostics is the key tool in the overall advanced approach. To this end, for the future application of AI in the area, it is strongly recommended to consider the following:Clinically relevant phenotyping applicable to advanced population screeningSystemic effects causing suboptimal health conditions considered in order to cost-effectively protect affected individuals against health-to-disease transitionClinically relevant health risk assessment utilizing health/disease-specific molecular patterns detectable in body fluids with high predictive power such as a comprehensive tear fluid analysis.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00337-1.

背景:原发性闭角型青光眼(PACG)仍然是不可逆失明的主要原因之一,到2040年,患者人数有增加的趋势,达到3204万,与2013年相比增加了58.4%。基于多层次诊断和机器学习的健康风险评估,针对原发性前房角闭合患者的个性化特征量身定制的治疗算法被认为是扭转这一趋势并保护弱势亚群免受健康向疾病发展影响的重要工具。目的:在比较激光周边虹膜切开术(LPI)或晶状体摘除术(LE)引起的眼压(IOP)变化的预后的基础上,开发一种个性化选择有效原发性闭角(PAC)治疗方法的方法。方法:采用多参数数据分析建立模型,预测LPI和LE一期闭角(PAC)治疗的个体疗效。为此,我们提出了治疗后眼压(IOP)的正动力学,作为成功治疗的客观衡量标准。通过将人工智能应用于30(LE)的前瞻性研究,已经考虑了37个解剖参数 + 30例(LPI)PAC患者。3p医学框架下的结果和数据解释:基于PAC患者的解剖和地形特征,已经开发了数学模型,为治疗中的LE或LPI提供了个性化选择。多级诊断是整体高级方法中的关键工具。为此,对于人工智能在该领域的未来应用,强烈建议考虑以下因素:适用于高级人群筛查的临床相关表型考虑导致次优健康状况的系统影响,以经济有效地保护受影响的个体免受健康到疾病的转变利用可检测的健康/疾病特异性分子模式进行临床相关健康风险评估具有高预测能力的体液,例如全面的泪液分析。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00337-1。
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引用次数: 0
The correlation between primary open-angle glaucoma (POAG) and gut microbiota: a pilot study towards predictive, preventive, and personalized medicine. 原发性开角型青光眼(POAG)与肠道微生物群之间的相关性:一项针对预测性、预防性和个性化药物的初步研究。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-08-11 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00336-2
Si Chen, Nan Wang, Siqi Xiong, Xiaobo Xia

Background: Glaucoma is the leading cause of irreversible blindness worldwide. Emerged evidence has shown that glaucoma is considered an immune system related disorder. The gut is the largest immune organ in the human body and the gut microbiota (GM) plays an irreversible role in maintaining immune homeostasis. But, how the GM influences glaucoma remains unrevealed. This study aimed at investigating the key molecules/pathways mediating the GM and the glaucoma to provide new biomarkers for future predictive, preventive, and personalized medicine.

Methods: Datasets from the primary open-angle glaucoma (POAG) patients (GSE138125) and datasets for target genes of GM/GM metabolites were downloaded from a public database. For GSE138125, the differentially expressed genes (DEGs) between healthy and POAG samples were identified. And the online Venn diagram tool was used to obtain the DEGs from POAG related to GM. After which GM-related DEGs were analyzed by correlation analysis, pathway enrichment analysis, and protein-protein interaction (PPI) network analysis. Human trabecular meshwork cells were used for validation, and the mRNA level of hub genes was verified by quantitative real-time polymerase chain reaction (RT-qPCR) in the in vitro glaucoma model.

Results: A total of 16 GM-related DEGs in POAG were identified from the above 2 datasets (9 upregulated genes and 7 downregulated genes). Pathway enrichment analysis indicated that these genes are mostly enriched in immune regulation especially macrophages-related pathways. Then 6 hub genes were identified by PPI network analysis and construction of key modules. Finally, RT-qPCR confirmed that the expression of the hub genes in the in vitro glaucoma model was consistent with the results of bioinformatics analysis of the mRNA chip.

Conclusion: This bioinformatic study elucidates NFKB1, IL18, KITLG, TLR9, FKBP2, and HDAC4 as hub genes for POAG and GM regulation. Immune response modulated by macrophages plays an important role in POAG and may be potential targets for future predictive, preventive, and personalized diagnosis and treatment.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00336-2.

背景:青光眼是世界范围内不可逆失明的主要原因。新出现的证据表明青光眼被认为是一种与免疫系统相关的疾病。肠道是人体最大的免疫器官,肠道微生物群在维持免疫稳态方面发挥着不可逆的作用。但是,转基因是如何影响青光眼的还没有被揭示。本研究旨在研究介导GM和青光眼的关键分子/途径,为未来的预测、预防和个性化医学提供新的生物标志物。方法:从公共数据库下载原发性开角型青光眼(POAG)患者的数据集(GSE138125)和GM/GM代谢产物靶基因的数据集。对于GSE138125,鉴定了健康和POAG样品之间的差异表达基因(DEG)。使用在线Venn图工具从POAG中获得与GM相关的DEG。然后通过相关性分析、通路富集分析和蛋白质-蛋白质相互作用(PPI)网络分析对GM相关的DeG进行分析。使用人小梁网细胞进行验证,并通过定量实时聚合酶链反应(RT-qPCR)在体外青光眼模型中验证hub基因的mRNA水平。结果:从上述2个数据集中共鉴定出16个POAG中的GM相关DEG(9个上调基因和7个下调基因)。通路富集分析表明,这些基因主要富集于免疫调节,尤其是巨噬细胞相关通路。然后通过PPI网络分析和关键模块的构建,鉴定出6个枢纽基因。最后,RT-qPCR证实hub基因在体外青光眼模型中的表达与mRNA芯片的生物信息学分析结果一致。结论:本生物信息学研究阐明NFKB1、IL18、KITLG、TLR9、FKBP2和HDAC4是POAG和GM调节的枢纽基因。巨噬细胞调节的免疫反应在POAG中发挥着重要作用,可能成为未来预测、预防和个性化诊断和治疗的潜在靶点。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00336-2。
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引用次数: 1
Quantitative phosphoproteomics reveals molecular pathway network alterations in human early-stage primary hepatic carcinomas: potential for 3P medical approach. 定量磷酸蛋白质组学揭示人类早期原发性肝癌的分子通路网络改变:3P医学方法的潜力。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-08-10 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00335-3
Yuping Zhang, Na Li, Lamei Yang, Wenshuang Jia, Zhijun Li, Qianwen Shao, Xianquan Zhan
<p><strong>Objective: </strong>Hepatic carcinoma is one of the most common types of malignant tumors in the digestive system, and its biological characteristics determine its high rate of metastasis and recurrence after radical resection, leading to a poor prognosis for patients. Increasing evidence demonstrates that phosphoproteins and phosphorylation-mediated molecular pathways influence the occurrence and development of hepatic carcinoma. It is urgent need to develop early-stage biomarkers for improving diagnosis, therapy, medical service, and prognostic assessment. We hypothesize that phosphoproteome and phosphorylation-mediated signaling pathway networks significantly differ in human early-stage primary hepatic carcinomas relative to control liver tissues, which will identify the key differentially phosphorylated proteins and phosphorylation-mediated signaling pathway network alterations in human early-stage primary hepatic carcinoma to innovate predictive diagnosis, prognostic assessment, and personalized medical services and progress beyond the state of the art in the framework of predictive, preventive, and personalized medicine (PPPM).</p><p><strong>Methods: </strong>Tandem mass tag (TMT)-based quantitative proteomics coupled with TiO<sub>2</sub> enrichment of phosphopeptides was used to identify phosphorylation profiling, and bioinformatics was used to analyze the pathways and biological functions of phosphorylation profiling between early-stage hepatic carcinoma tissues and tumor-adjacent normal control tissues. Furthermore, the integrative analysis with transcriptomic data from TCGA database obtained differently expressed genes (DEGs) corresponding to differentially phosphorylated proteins (DPPs) and overall survival (OS)-related DPPs.</p><p><strong>Results: </strong>A total of 1326 phosphopeptides derived from 858 DPPs in human early-stage primary hepatic carcinoma were identified. KEGG pathway network analysis of 858 DPPs revealed 33 statistically significant signaling pathways, including spliceosome, glycolysis/gluconeogenesis, B-cell receptor signaling pathway, HIF-1 signaling pathway, and fatty acid degradation. Gene Ontology (GO) analysis of 858 DPPs revealed that protein phosphorylation was involved in 57 biological processes, 40 cellular components, and 37 molecular functions. Protein-protein interaction (PPI) network constructed multiple high-combined scores and co-expressed DPPs. Integrative analysis of transcriptomic data and DPP data identified 105 overlapped molecules (DPPs; DEGs) between hepatic carcinoma tissues and control tissues and 125 OS-related DPPs. Overlapping Venn plots showed 14 common molecules among datasets of DPPs, DEGs, and OS-related DDPs, including FTCD, NDRG2, CCT2, PECR, SLC23A2, PNPLA7, ANLN, HNRNPM, HJURP, MCM2, STMN1, TCOF1, TOP2A, and SSRP1. The drug sensitivities of OS-related DPPs were identified, including LMOD1, CAV2, UBE2E2, RAPH1, ANXA5, HDLBP, CUEDC1, APBB1IP, VCL, SRSF10, SLC23A2, EPB41L2,
目的:肝癌是消化系统最常见的恶性肿瘤之一,其生物学特性决定了其根治性切除后的高转移率和复发率,导致患者预后不佳。越来越多的证据表明,磷蛋白和磷酸化介导的分子途径影响肝癌的发生和发展。迫切需要开发早期生物标志物来改善诊断、治疗、医疗服务和预后评估。我们假设磷酸化蛋白质组和磷酸化介导的信号通路网络在人类早期原发性肝癌中相对于对照肝组织显著不同,其将鉴定人类早期原发性肝癌中关键的差异磷酸化蛋白和磷酸化介导的信号通路网络改变,以创新预测诊断、预后评估和个性化医疗服务,并在预测、预防、,方法:采用基于串联质谱标签(TMT)的定量蛋白质组学结合磷酸肽的TiO2富集来鉴定磷酸化谱,并利用生物信息学分析早期肝癌组织和肿瘤邻近正常对照组织之间磷酸化谱的途径和生物学功能。此外,通过与TCGA数据库转录组学数据的整合分析,获得了与差异磷酸化蛋白(DPPs)和总生存期(OS)相关的DPPs相对应的差异表达基因(DEGs)。对858个DPP的KEGG通路网络分析揭示了33个具有统计学意义的信号通路,包括剪接体、糖酵解/糖异生、B细胞受体信号通路、HIF-1信号通路和脂肪酸降解。对858个DPP的基因本体论(GO)分析显示,蛋白质磷酸化参与了57个生物过程、40个细胞成分和37个分子功能。蛋白质-蛋白质相互作用(PPI)网络构建了多个高综合评分和共表达DPPs。转录组数据和DPP数据的综合分析确定了肝癌组织和对照组织之间的105个重叠分子(DPPs;DEG)和125个OS相关的DPPs。重叠Venn图显示了DPP、DEG和OS相关DDP数据集中的14个常见分子,包括FTCD、NDRG2、CCT2、PECR、SLC23A2、PNPLA7、ANLN、HNRNPM、HJURP、MCM2、STMN1、TCOF1、TOP2A和SSRP1。鉴定了OS相关DPP的药物敏感性,包括LMOD1、CAV2、UBE2E2、RAPH1、ANXA5、HDLBP、CUEDC1、APBB1IP、VCL、SRSF10、SLC23A2、EPB41L2、ESR1、PLEKHA4、SAFB2、SMARCAD1、VCAN、PSD4、RDH16、NOP56、MEF2C、BAIAP2L2、NAGS、SRSF2、FHOD3,结论:人类早期原发性肝癌组织中磷酸化蛋白质组和磷酸化介导的信号通路的鉴定和注释为肿瘤的预防和治疗提供了新的方向,有助于丰富磷酸化功能研究和开发新的生物标志物;(ii)丰富磷酸化介导的信号通路,以更深入地了解早期原发性肝癌的潜在机制;以及(iii)开发促进靶向磷酸化位点的抗肿瘤药物。我们推荐在早期原发性肝癌中进行定量磷酸化蛋白质组学,这为深入了解早期原发癌的分子机制、发现有效的治疗靶点/药物以及构建可靠的磷酸化相关生物标志物以用于患者分层、预测诊断、预后评估提供了巨大的前景,以及PPPM框架内的个性化医疗服务。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00335-3。
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引用次数: 0
Identifying oxidative stress-related biomarkers in idiopathic pulmonary fibrosis in the context of predictive, preventive, and personalized medicine using integrative omics approaches and machine-learning strategies. 使用综合组学方法和机器学习策略,在预测、预防和个性化医学的背景下,识别特发性肺纤维化中的氧化应激相关生物标志物。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-31 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00334-4
Fan Yang, Wendusubilige, Jingwei Kong, Yuhan Zong, Manting Wang, Chuanqing Jing, Zhaotian Ma, Wanyang Li, Renshuang Cao, Shuwen Jing, Jie Gao, Wenxin Li, Ji Wang
<p><strong>Background: </strong>Idiopathic pulmonary fibrosis (IPF) is a rare interstitial lung disease with a poor prognosis that currently lacks effective treatment methods. Preventing the acute exacerbation of IPF, identifying the molecular subtypes of patients, providing personalized treatment, and developing individualized drugs are guidelines for predictive, preventive, and personalized medicine (PPPM / 3PM) to promote the development of IPF. Oxidative stress (OS) is an important pathological process of IPF. However, the relationship between the expression levels of oxidative stress-related genes (OSRGs) and clinical indices in patients with IPF is unclear; therefore, it is still a challenge to identify potential beneficiaries of antioxidant therapy. Because PPPM aims to recognize and manage diseases by integrating multiple methods, patient stratification and analysis based on OSRGs and identifying biomarkers can help achieve the above goals.</p><p><strong>Methods: </strong>Transcriptome data from 250 IPF patients were divided into training and validation sets. Core OSRGs were identified in the training set and subsequently clustered to identify oxidative stress-related subtypes. The oxidative stress scores, clinical characteristics, and expression levels of senescence-associated secretory phenotypes (SASPs) of different subtypes were compared to identify patients who were sensitive to antioxidant therapy to conduct differential gene functional enrichment analysis and predict potential therapeutic drugs. Diagnostic markers between subtypes were obtained by integrating multiple machine learning methods, their expression levels were tested in rat models with different degrees of pulmonary fibrosis and validation sets, and nomogram models were constructed. CIBERSORT, single-cell RNA sequencing, and immunofluorescence staining were used to explore the effects of OSRGs on the immune microenvironment.</p><p><strong>Results: </strong>Core OSRGs classified IPF into two subtypes. Patients classified into subtypes with low oxidative stress levels had better clinical scores, less severe fibrosis, and lower expression of SASP-related molecules. A reliable nomogram model based on five diagnostic markers was constructed, and these markers' expression stability was verified in animal experiments. The number of neutrophils in the immune microenvironment was significantly different between the two subtypes and was closely related to the degree of fibrosis.</p><p><strong>Conclusion: </strong>Within the framework of PPPM, this work comprehensively explored the role of OSRGs and their mediated cellular senescence and immune processes in the progress of IPF and assessed their capabilities aspredictors of high oxidative stress and disease progression,targets of the vicious loop between regulated pulmonary fibrosis and OS for targeted secondary and tertiary prevention, andreferences for personalized antioxidant and antifibrotic therapies.</p><p><strong>Supplement
背景:特发性肺纤维化(IPF)是一种罕见的间质性肺病,预后不良,目前缺乏有效的治疗方法。预防IPF急性加重,识别患者的分子亚型,提供个性化治疗,开发个性化药物是预测性、预防性和个性化药物(PPPM/3PM)促进IPF发展的指南。氧化应激(OS)是IPF的一个重要病理过程。然而,IPF患者氧化应激相关基因(OSRGs)的表达水平与临床指标之间的关系尚不清楚;因此,确定抗氧化疗法的潜在受益者仍然是一个挑战。由于PPPM旨在通过整合多种方法来识别和管理疾病,因此基于OSRGs的患者分层和分析以及识别生物标志物可以帮助实现上述目标。方法:将250例IPF患者的转录组数据分为训练集和验证集。核心OSRG在训练集中被鉴定,随后被聚类以鉴定氧化应激相关的亚型。比较不同亚型的氧化应激评分、临床特征和衰老相关分泌表型(SASP)的表达水平,以确定对抗氧化治疗敏感的患者,从而进行差异基因功能富集分析并预测潜在的治疗药物。通过整合多种机器学习方法获得亚型之间的诊断标志物,在不同程度肺纤维化的大鼠模型和验证集中测试其表达水平,并构建列线图模型。CIBERSORT、单细胞RNA测序和免疫荧光染色用于探索OSRGs对免疫微环境的影响。结果:核心OSRGs将IPF分为两个亚型。被分为低氧化应激水平亚型的患者具有更好的临床评分、较轻的纤维化和较低的SASP相关分子表达。基于五种诊断标记构建了一个可靠的列线图模型,并在动物实验中验证了这些标记的表达稳定性。免疫微环境中中性粒细胞的数量在两种亚型之间有显著差异,并且与纤维化程度密切相关。结论:在PPPM的框架内,本工作全面探讨了OSRGs及其介导的细胞衰老和免疫过程在IPF进展中的作用,并评估了它们作为高氧化应激和疾病进展的预测因子、调节性肺纤维化和OS之间的恶性循环靶点的能力,以进行有针对性的二级和三级预防,以及个性化抗氧化剂和抗纤维化疗法的参考文献。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00334-4。
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引用次数: 0
Royal jelly: a predictive, preventive and personalised strategy for novel treatment options in non-communicable diseases. 蜂王浆:一种预测性、预防性和个性化的非传染性疾病治疗策略。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-18 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00330-8
Beatriz G Baptista, Ligia S Lima, Marcia Ribeiro, Isadora K Britto, Livia Alvarenga, Julie A Kemp, Ludmila Fmf Cardozo, Andresa A Berretta, Denise Mafra

Royal jelly (RJ) is a bee product produced by young adult worker bees, composed of water, proteins, carbohydrates and lipids, rich in bioactive components with therapeutic properties, such as free fatty acids, mainly 10-hydroxy-trans-2-decenoic acid (10-H2DA) and 10-hydroxydecanoic acid (10-HDA), and major royal jelly proteins (MRJPs), as well as flavonoids, most flavones and flavonols, hormones, vitamins and minerals. In vitro, non-clinical and clinical studies have confirmed its vital role as an antioxidant and anti-inflammatory. This narrative review discusses the possible effects of royal jelly on preventing common complications of non-communicable diseases (NCDs), such as inflammation, oxidative stress and intestinal dysbiosis, from the viewpoint of predictive, preventive and personalised medicine (PPPM/3PM). It is concluded that RJ, predictively, can be used as a non-pharmacological therapy to prevent and mitigate complications related to NCDs, and the treatment must be personalised.

蜂王浆(RJ)是由年轻成年工蜂生产的蜂产品,由水、蛋白质、碳水化合物和脂质组成,富含具有治疗作用的生物活性成分,如游离脂肪酸,主要是10-羟基反式-2-癸烯酸(10-H2DA)和10-羟基癸酸(10-HDA),以及主要的蜂王浆蛋白(MRJPs),维生素和矿物质。在体外,非临床和临床研究已经证实了它作为抗氧化剂和抗炎药的重要作用。这篇叙述性综述从预测性、预防性和个性化医学(PPPM/3PM)的角度讨论了蜂王浆在预防非传染性疾病常见并发症(如炎症、氧化应激和肠道微生态失调)方面的可能作用。结论是,可以预见,RJ可以作为一种非药物治疗来预防和减轻与非传染性疾病相关的并发症,并且治疗必须个性化。
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引用次数: 0
COVID-19 lessons to protect populations against future pandemics by implementing PPPM principles in healthcare. 新冠肺炎经验教训,通过在医疗保健中实施PPPM原则来保护人口免受未来流行病的影响。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-14 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00331-7
Cuihong Tian, Lois Balmer, Xuerui Tan

The coronavirus disease 2019 (COVID-19) pandemic has continued for more than 3 years, placing a huge burden on society worldwide. Although the World Health Organization (WHO) has declared an end to COVID-19 as a Public Health Emergency of International Concern (PHEIC), it is still considered a global threat. Previously, there has been a long debate as to whether the COVID-19 emergency will eventually end or transform into a more common infectious disease from a PHEIC, and how should countries respond to similar pandemics in the future more time-efficiently and cost-effectively. We reviewed the past, middle and current situation of COVID-19 based on bibliometric analysis and epidemiological data. Thereby, the necessity is indicated to change the paradigm from reactive healthcare services to predictive, preventive and personalised medicine (PPPM) approach, in order to effectively protect populations against COVID-19 and any future pandemics. Corresponding measures are detailed in the article including the involvement of multi-professional expertise, application of artificial intelligence, rapid diagnostics and patient stratification, and effective protection, amongst other to be considered by advanced health policy.

2019冠状病毒病(新冠肺炎)大流行已持续3年多,给全球社会带来了巨大负担。尽管世界卫生组织(世界卫生组织)已宣布新冠肺炎结束为国际关注的突发公共卫生事件,但它仍然被视为全球威胁。此前,人们一直在争论新冠肺炎紧急情况是否最终会结束或从PHEIC转变为更常见的传染病,以及各国未来应如何更有效地应对类似的流行病。在文献计量分析和流行病学资料的基础上,回顾了新冠肺炎的过去、中期和现状。因此,有必要将模式从反应性医疗保健服务转变为预测性、预防性和个性化医疗(PPPM)方法,以有效保护人群免受新冠肺炎和任何未来流行病的影响。文章详细介绍了相应的措施,包括多专业专业知识的参与、人工智能的应用、快速诊断和患者分层以及有效的保护,以及高级卫生政策需要考虑的其他措施。
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引用次数: 1
Anatomic characteristics of shoulder based on MRI accurately predict incomplete rotator cuff injuries in patients: relevance for predictive, preventive, and personalized healthcare strategies. 基于MRI的肩部解剖特征可以准确预测患者的不完全肩袖损伤:与预测性、预防性和个性化医疗策略的相关性。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-13 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00333-5
Hangxing Wu, Zhijie Zuo, Yucong Li, Haoqiang Song, Wanyan Hu, Jingle Chen, Chao Xie, Lijun Lin

Background and pppm-related working hypothesis: In the diagnosis of incomplete rotator cuff injuries (IRCI), magnetic resonance imaging (MRI) and ultrasound examination often have false-positive and false-negative results, while arthroscopy is expensive, invasive, and complex. From the strategy of predictive, preventive, and personalized medicine (PPPM), shoulder anatomical characteristics based on MRI have been demonstrated to accurately predict IRCI and their clinical applicability for personalized prediction of IRCI.

Aims: This study aimed to develop and validate a nomogram based on anatomical features of the shoulder on MRI to identify IRCI for PPPM healthcare strategies.

Methods: The medical information of 257 patients undergoing preoperative MRI examination was retrospectively reviewed and served as the primary cohort. Partial-thickness rotator cuff tears (RCTs) and tendinopathy observed under arthroscopy were considered IRCI. Using logistic regression analyses and least absolute shrinkage and selection operator (LASSO), IRCI was identified among various preoperative factors containing shoulder MRI and clinical features. A nomogram was constructed and subjected to internal and external validations (80 patients).

Results: The following eight independent risk factors for IRCI were identified:AgeThe left injured sidesThe Goutallier classification of supraspinatus in oblique coronal positionThe Goutallier classification of supraspinatus in the axial positionAcromial thicknessAcromiohumeral distanceCoracohumeral distanceAbnormal acromioclavicular joint signalsThe nomogram accurately predicted IRCI in the development (C-index, 0.932 (95% CI, 0.891, 0.973)) and validation (C-index, 0.955 (95% CI, 0.918, 0.992)) cohorts. The calibration curve was consistent between the predicted IRCI probability and the actual IRCI ratio of the nomogram. The decision curve analysis and clinical impact curves demonstrated that the model had high clinical applicability.

Conclusions: Eight independent factors that accurately predicted IRCI were determined using MRI anatomical findings. These personalized factors can prevent unnecessary diagnostic interventions (e.g., arthroscopy) and can assist surgeons in implementing individualized clinical decisions in medical practice, thus addressing the goals of PPPM.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00333-5.

背景和pppm相关的工作假设:在不完全性肩袖损伤(IRCI)的诊断中,磁共振成像(MRI)和超声检查通常会有假阳性和假阴性的结果,而关节镜检查是昂贵、有创和复杂的。从预测性、预防性和个性化医学(PPPM)的策略来看,基于MRI的肩部解剖特征已被证明可以准确预测IRCI,并可用于个性化预测IRCI。目的:本研究旨在开发和验证基于MRI肩部解剖特征的列线图,以确定用于PPPM医疗策略的IRCI。方法:回顾性分析257例接受术前MRI检查的患者的医疗信息,并作为主要队列。关节镜下观察到的部分厚度肩袖撕裂(RCT)和腱病变被认为是IRCI。通过逻辑回归分析和最小绝对收缩选择算子(LASSO),在包括肩部MRI和临床特征在内的各种术前因素中确定了IRCI。结果:确定了以下8个IRCI的独立危险因素:年龄左侧损伤侧斜冠状位冈上肌的Gouchter分类轴位冈上肌体的Goucotter分类肩峰厚度肩峰距离距离肩锁关节异常信号诺模图准确预测了发育(C指数,0.932(95%CI,0.891,0.973))和验证(C指数:0.955(95%CI),0.918,0.992)队列中的IRCI。校准曲线在诺模图的预测IRCI概率和实际IRCI比率之间是一致的。决策曲线分析和临床影响曲线表明,该模型具有较高的临床适用性。结论:利用MRI解剖结果确定了准确预测IRCI的八个独立因素。这些个性化因素可以防止不必要的诊断干预(如关节镜检查),并可以帮助外科医生在医疗实践中实施个性化的临床决策,从而实现PPPM的目标。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00333-5。
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引用次数: 0
Genetically predicted the causal relationship between gut microbiota and infertility: bidirectional Mendelian randomization analysis in the framework of predictive, preventive, and personalized medicine. 基因预测肠道微生物群与不孕之间的因果关系:在预测、预防和个性化医学框架下的双向孟德尔随机化分析。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-07-07 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00332-6
Yujia Xi, Chenwei Zhang, Yiqian Feng, Shurui Zhao, Yukai Zhang, Guosheng Duan, Wei Wang, Jingqi Wang

Objective: Several studies have reported the association between gut microbiota and infertility; however, the causal association between them remains unclear. This study aimed to explore the causal relationship between gut microbiota and infertility and evaluate how specific gut microbiota can support early monitoring and prevention of infertility in the context of predictive, preventive, and personalized medicine (PPPM/3PM).

Methods: The gut microbiota GWAS data included 18,340 individuals. Female infertility (6481 cases and 68,969 controls) and male infertility data (680 cases and 72,799 controls) were obtained from the FinnGen consortium. The inverse variance weighting (IVW), MR-Egger, weighted median (WM), Cochran Q tests, MR-PRESSO, and leave-one-out were used as a supplement to Mendelian randomization (MR) results and sensitivity analysis.

Results: The results of MR analysis indicated a significant causal association between Eubacterium oxidoreducens (OR = 2.048, P = 0.008), Lactococcus (OR = 1.445, P = 0.042), Eubacterium ventriosum (OR = 0.436, P = 0.018), Eubacterium rectale (OR = 0.306, P = 0.002), and Ruminococcaceae NK4A214 (OR = 0.537, P = 0.045) and male infertility. Genetically predicted Eubacterium ventriosum (OR = 0.809, P = 0.018), Holdemania (OR = 0.836, P = 0.037), Lactococcus (OR = 0.867, P = 0.020), Ruminococcaceae NK4A214 (OR = 0.830, P < 0.050), Ruminococcus torques (OR = 0.739, P = 0.022), and Faecalibacterium (OR = 1.311, P = 0.007) were associated with female infertility. Sensitivity analysis did not detect heterogeneity and pleiotropy (P > 0.05).

Conclusions: Our results provided evidence for the causal relationship between some gut microbiota and male and female infertility. These findings might be valuable in providing personalized treatment options for preventing infertility and improving reproductive function by monitoring and regulating the gut microbiota of infertility patients in the context of PPPM. Moreover, detecting the abundance of microbiota in feces can support preventive and personalized strategies, which may benefit more infertility patients.

Supplementary information: The online version contains supplementary material available at 10.1007/s13167-023-00332-6.

目的:一些研究报道了肠道微生物群与不孕之间的关系;然而,它们之间的因果关系尚不清楚。本研究旨在探索肠道微生物群与不孕不育之间的因果关系,并评估特定的肠道微生物群如何在预测、预防和个性化医学(PPPM/3PM)的背景下支持不孕不育的早期监测和预防。方法:肠道微生物群GWAS数据包括18340名个体。女性不育(6481例和68969例对照)和男性不育数据(680例和72799例对照)来自FinnGen联盟。反方差加权(IVW)、MR-Egger、加权中位数(WM)、Cochran Q检验、MR-PRESSO和留一检验被用作孟德尔随机化(MR)结果和敏感性分析的补充。结果:MR分析结果表明氧化真杆菌(OR = 2.048,P = 0.008),乳球菌(或 = 1.445,P = 0.042)、腹氏真杆菌(OR = 0.436,P = 0.018)、直肠真杆菌(OR = 0.306,P = 0.002)和瘤胃球菌科NK4A214(OR = 0.537,P = 0.045)和男性不育。基因预测的腹足真杆菌(OR = 0.809,P = 0.018),Holdemania(OR = 0.836,P = 0.037),乳球菌(或 = 0.867,P = 0.020)、瘤胃球菌科NK4A214(OR = 0.830,P P = 0.022)和粪杆菌(OR = 1.311,P = 0.007)与女性不育有关。敏感性分析未发现异质性和多效性(P > 结论:我们的研究结果为某些肠道微生物群与男性和女性不孕之间的因果关系提供了证据。这些发现可能有助于通过监测和调节PPPM背景下不孕患者的肠道微生物群,为预防不孕和改善生殖功能提供个性化的治疗选择。此外,检测粪便中微生物群的丰度可以支持预防性和个性化策略,这可能使更多不孕不育患者受益。补充信息:在线版本包含补充材料,可访问10.1007/s13167-023-00332-6。
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引用次数: 0
Ubiquitinomics revealed disease- and stage-specific patterns relevant for the 3PM approach in human sigmoid colon cancers. 泛素经济学揭示了与人类乙状结肠癌3PM方法相关的疾病和阶段特异性模式。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-30 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00328-2
Hua Yang, Na Li, Liang Chen, Lei Zhou, Yuanchen Zhou, Jixiang Liu, Wenshuang Jia, Ruofei Chen, Junwen Su, Lamei Yang, Xiaoxia Gong, Xianquan Zhan
<p><strong>Objective: </strong>The patients with sigmoid colorectal cancer commonly show high mortality and poor prognosis. Increasing evidence has demonstrated that the ubiquitinated proteins and ubiquitination-mediated molecular pathways influence the growth and aggressiveness of colorectal cancer. It emphasizes the scientific merits of quantitative ubiquitinomics in human sigmoid colon cancer. We hypothesize that the ubiquitinome and ubiquitination-mediated pathway networks significantly differ in sigmoid colon cancers compared to controls, which offers the promise for in-depth insight into molecular mechanisms, discovery of effective therapeutic targets, and construction of reliable biomarkers in the framework of predictive, preventive, and personalized medicine (PPPM; 3P medicine).</p><p><strong>Methods: </strong>The first ubiquitinome analysis was performed with anti-K-ε-GG antibody beads (PTMScan ubiquitin remnant motif [K-ε-GG])-based label-free quantitative proteomics and bioinformatics to identify and quantify ubiquitination profiling between sigmoid colon cancer tissues and para-carcinoma tissues. A total of 100 human sigmoid colon cancer samples that included complete clinical information and the corresponding gene expression data were obtained from The Cancer Genome Atlas (TCGA). Ubiquitination was the main way of protein degradation; the relationships between differentially ubiquitinated proteins (DUPs) and their differently expressed genes (DEGs) and between DUPs and their differentially expressed proteins (DEPs) were analyzed between cancer tissues and control tissues. The overall survival of those DUPs was obtained with Kaplan-Meier method.</p><p><strong>Results: </strong>A total of 1249 ubiquitinated sites within 608 DUPs were identified in human sigmoid colon cancer tissues. KEGG pathway network analysis of these DUPs revealed 35 statistically significant signaling pathways, such as salmonella infection, glycolysis/gluconeogenesis, and ferroptosis. Gene Ontology (GO) analysis of 608 DUPs revealed that protein ubiquitination was involved in 98 biological processes, 64 cellular components, 51 molecule functions, and 26 immune system processes. Protein-protein interaction (PPI) network of 608 DUPs revealed multiple high-combined scores and co-expressed DUPs. The relationship analysis between DUPs and their DEGs found 4 types of relationship models, including DUP-up (increased ubiquitination level) and DEG-up (increased gene expression), DUP-up and DEG-down (decreased gene expression), DUP-down (decreased ubiquitination level) and DEG-up, and DUP-down and DEG-down. The relationship analysis between DUPs and their DEPs found 4 types of relationship models, including DUP-up and DEP-up (increased protein expression), DUP-up and DEP-down (decreased protein expression), DUP-down and DEP-up, and DUP-down and DEP-down. Survival analysis found 46 overall survival-related DUPs in sigmoid colon cancer, and the drug sensitivity of overall sur
目的:乙状结肠癌症患者死亡率高,预后差。越来越多的证据表明,泛素化蛋白和泛素化介导的分子途径影响癌症的生长和侵袭性。它强调了定量泛素在人类乙状结肠癌症中的科学价值。我们假设,与对照组相比,乙状结肠癌中的泛素酶和泛素化介导的通路网络显著不同,这为深入了解分子机制、发现有效的治疗靶点以及在预测、预防、,方法:首次用基于抗K-ε-GG抗体珠(PTMScan泛素残基序[K-εGG])的无标记定量蛋白质组学和生物信息学对乙状结肠癌症组织和癌旁组织的泛素化谱进行分析。从癌症基因组图谱(TCGA)获得总共100个人类乙状结肠癌症样本,这些样本包括完整的临床信息和相应的基因表达数据。泛素化是蛋白质降解的主要途径;分析了癌症组织和对照组织中差异泛素化蛋白(DUP)及其差异表达基因(DEG)之间以及DUP及其差异表达蛋白(DEP)之间的关系。这些DUP的总生存率通过Kaplan-Meier方法获得。结果:在人类乙状结肠癌症组织中,608个DUP中共鉴定出1249个泛素化位点。对这些DUP的KEGG通路网络分析揭示了35种具有统计学意义的信号通路,如沙门氏菌感染、糖酵解/糖异生和脱铁性贫血。对608个DUP的基因本体论(GO)分析显示,蛋白质泛素化参与了98个生物过程、64个细胞成分、51个分子功能和26个免疫系统过程。608个DUP的蛋白质-蛋白质相互作用(PPI)网络显示了多个高综合评分和共表达的DUP。DUP及其DEG之间的关系分析发现了4种类型的关系模型,包括DUP up(泛素化水平增加)和DEG up(基因表达增加)、DUP up和DEG down(基因表达减少)、DUP down(泛素素化水平降低)和DEG-up,以及DUP down和DEG-down。DUP和它们的DEP之间的关系分析发现了4种类型的关系模型,包括DUP向上和DEP向上(增加蛋白质表达)、DUP向上和DEP向下(减少蛋白质表达),DUP向下和DEP上,以及DUP下降和DEP下降。生存分析发现癌症乙状结肠中存在46个总体生存相关DUP,并确定了总体生存相关的DUP的药物敏感性。结论:本研究首次提供了人类乙状结肠癌症中差异泛素化蛋白质组学特征、泛素化参与的信号通路网络变化,以及蛋白泛素化及其基因表达和蛋白泛素表达之间的关系模型。它有望深入了解癌症的分子机制,并在3P医学的背景下发现有效的治疗靶点和生物标志物,用于患者分层、预测诊断、预后评估和个性化治疗。补充信息:在线版本包含补充材料,请访问10.1007/s13167-023-00328-2。
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引用次数: 0
Growth hormone proteoformics atlas created to promote predictive, preventive, and personalized approach in overall management of pituitary neuroendocrine tumors. 创建生长激素蛋白形成图谱,以促进垂体神经内分泌肿瘤整体管理的预测性、预防性和个性化方法。
IF 6.5 2区 医学 Q1 Medicine Pub Date : 2023-06-27 eCollection Date: 2023-09-01 DOI: 10.1007/s13167-023-00329-1
Lamei Yang, Chunling Li, Tao Song, Xianquan Zhan

Human growth hormone (GH) is the indispensable hormone for the maintenance of normal physiological functions of the human body, including the growth, development, metabolism, and even immunoregulation. The GH is synthesized, secreted, and stored by somatotroph cells in adenohypophysis. Abnormal GH is associated with various GH-related diseases, such as acromegaly, dwarfism, diabetes, and cancer. Currently, some studies found there are dozens or even hundreds of GH proteoforms in tissue and serum as well as a series of GH-binding protein (GHBP) proteoforms and GH receptor (GHR) proteoforms were also identified. The structure-function relationship of protein hormone proteoforms is significantly important to reveal their overall physiological and pathophysiological mechanisms. We propose the use of proteoformics to study the relationship between every GH proteoform and different physiological/pathophysiological states to clarify the pathogenic mechanism of GH-related disease such as pituitary neuroendocrine tumor and conduct precise molecular classification to promote predictive preventive personalized medicine (PPPM / 3P medicine). This article reviews GH proteoformics in GH-related disease such as pituitary neuroendocrine tumor, which has the potential role to provide novel insight into pathogenic mechanism, discover novel therapeutic targets, identify effective GH proteoform biomarker for patient stratification, predictive diagnosis, and prognostic assessment, improve therapy method, and further accelerate the development of 3P medicine.

人体生长激素(GH)是维持人体正常生理功能所不可或缺的激素,包括生长、发育、代谢甚至免疫调节。生长激素由腺垂体中的生长激素细胞合成、分泌和储存。生长激素异常与各种生长激素相关疾病有关,如肢端肥大症、侏儒症、糖尿病和癌症。目前,一些研究发现,组织和血清中存在数十种甚至数百种GH蛋白形式,还鉴定出一系列GH结合蛋白(GHBP)和GH受体(GHR)蛋白形式。蛋白-激素蛋白形式的结构-功能关系对于揭示其整体生理和病理生理机制具有重要意义。我们建议使用蛋白形成学来研究每种GH蛋白形式与不同生理/病理生理状态之间的关系,以阐明垂体神经内分泌肿瘤等GH相关疾病的发病机制,并进行精确的分子分类,以促进预测性预防性个性化药物(PPPM/3P药物)。本文综述了生长激素蛋白在垂体神经内分泌肿瘤等生长激素相关疾病中的作用,该作用可能为深入了解发病机制、发现新的治疗靶点、确定有效的生长激素蛋白生物标志物用于患者分层、预测诊断和预后评估、改进治疗方法、,进一步加快3P医学的发展。
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