Pub Date : 2022-07-19DOI: 10.1007/s12042-022-09318-6
N. Tahir, Nurul Liyana Rozali, Abdul Rahman Siti Rahmah, M. Amiruddin, Lim Fook Hwa, K. Shaari, F. Abas, A. Othman, G. K. A. Parveez, U. S. Ramli
{"title":"Metabolome Study of Oil Palm (Elaeis guineensis Jacq.) Planted in Different Environment Conditions","authors":"N. Tahir, Nurul Liyana Rozali, Abdul Rahman Siti Rahmah, M. Amiruddin, Lim Fook Hwa, K. Shaari, F. Abas, A. Othman, G. K. A. Parveez, U. S. Ramli","doi":"10.1007/s12042-022-09318-6","DOIUrl":"https://doi.org/10.1007/s12042-022-09318-6","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48383933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Identification of ACC Synthetase Genes in Saccharum and their Expression Profiles During Plant Growth and in Response to Low-nitrogen Stress","authors":"Zilin Wu, Xiangbo Zhang, Nannan Zhang, Xiaoning Gao, Xiaomin Feng, Qiaoying Zeng, Xinglong Chen, Jiayun Wu, Y. Qi","doi":"10.1007/s12042-022-09316-8","DOIUrl":"https://doi.org/10.1007/s12042-022-09316-8","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45446120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-05-14DOI: 10.1007/s12042-022-09315-9
Singha R. Dhungana, D. Braun
{"title":"Genomic Analyses of SUT and TST Sugar Transporter Families in Low and High Sugar Accumulating Sugarcane Species (Saccharum spontaneum and Saccharum officinarum)","authors":"Singha R. Dhungana, D. Braun","doi":"10.1007/s12042-022-09315-9","DOIUrl":"https://doi.org/10.1007/s12042-022-09315-9","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42454591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-07DOI: 10.1007/s12042-022-09311-z
Nandita Banerjee, Sanjeev Kumar, A. Annadurai, A. Singh, P. Singh, J. Singh, R. K. Singh, Sanjeev Kumar
{"title":"An Early Season Perspective of Key Differentially Expressed Genes and Single Nucleotide Polymorphisms Involved in Sucrose Accumulation in Sugarcane","authors":"Nandita Banerjee, Sanjeev Kumar, A. Annadurai, A. Singh, P. Singh, J. Singh, R. K. Singh, Sanjeev Kumar","doi":"10.1007/s12042-022-09311-z","DOIUrl":"https://doi.org/10.1007/s12042-022-09311-z","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44432787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Investigation of genome-wide InDel distribution and segregation in Populus with restriction-site associated DNA sequencing data","authors":"Zhiliang Pan, Zhiting Li, Jinpeng Zhang, Shengjun Bai, Wei Zhao, C. Tong","doi":"10.1007/s12042-022-09312-y","DOIUrl":"https://doi.org/10.1007/s12042-022-09312-y","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"52873335","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-25DOI: 10.1007/s12042-022-09313-x
A. L. G. L. Peres, R. Coletta, J. S. Soares, M. Menossi
{"title":"Gene Silencing Using Artificial miRNA in Sugarcane","authors":"A. L. G. L. Peres, R. Coletta, J. S. Soares, M. Menossi","doi":"10.1007/s12042-022-09313-x","DOIUrl":"https://doi.org/10.1007/s12042-022-09313-x","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44407022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-22DOI: 10.1007/s12042-022-09310-0
P. Adu-Gyamfi, A. Akpertey, M. Barnor, A. Dadzie, S. Osei-Akoto, F. Padi
{"title":"Genotype × Environment Interaction Effects on Cashew (Anacardium occidentale L.) Flower Sex Type Expression","authors":"P. Adu-Gyamfi, A. Akpertey, M. Barnor, A. Dadzie, S. Osei-Akoto, F. Padi","doi":"10.1007/s12042-022-09310-0","DOIUrl":"https://doi.org/10.1007/s12042-022-09310-0","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44207063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-03-08DOI: 10.1007/s12042-022-09309-7
Danwen Fu, Y. Hui, Yahui Chen, Shaohua Yang, F. Gao
{"title":"Screening of Upstream Transcript Factors of IbMYB1-1 by Yeast One-hybrid in Purple-fleshed Sweet Potato","authors":"Danwen Fu, Y. Hui, Yahui Chen, Shaohua Yang, F. Gao","doi":"10.1007/s12042-022-09309-7","DOIUrl":"https://doi.org/10.1007/s12042-022-09309-7","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46764193","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-02-19DOI: 10.1007/s12042-021-09307-1
Farida Abubakari, P. Nkrumah, D. R. Fernando, P. Erskine, G. Echevarria, A. van der Ent
{"title":"Manganese Accumulation and Tissue-level Distribution in the Australian Hyperaccumulator Gossia Bidwillii (Myrtaceae)","authors":"Farida Abubakari, P. Nkrumah, D. R. Fernando, P. Erskine, G. Echevarria, A. van der Ent","doi":"10.1007/s12042-021-09307-1","DOIUrl":"https://doi.org/10.1007/s12042-021-09307-1","url":null,"abstract":"","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41945261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-01-26DOI: 10.1007/s12042-021-09308-0
Chunni Liu, Yang Huang, Yu Liang
Camellia limonia is a kind of rare plant with high economic and medicinal value. It’s a plant species growing in calcareous soil of limestone, which means they can grow well in high calcium environment. Compared with C. limonia, Camellia nitidissima is a plant growing in acidic soil, which grows slowly or even dies in high calcium environment. However, there are few studies on C. limonia in karst soil environment and its adaptation mechanism is no clear. In this study, we found that under high calcium treatment, the chlorophyll content and leaf areas of C. limonia increased, while those of C. nitidissima decreased. The photosynthetic efficiency of C. limonia was more stable and higher than C. nitidissima. Compared with C. nitidissima, the conductance was larger and the degree of leaf shrinkage was smaller in C. limonia. The metabolomics analysis of both leaves showed that the kaempferol-3-o-rutinoside, tyrosol, 6-o-methyldeacetylisoipecoside and (r)-mandelic acid are the main differently metabolic compounds. The results of metagenomics in karst soil showed that the secretion (propylene oxide) of Acaryochloris marina in rhizosphere is closely related to the adaptation of C. nitidissima in high-calcium regions. Through metabolomics and metageomics integrative analysis, flavone and flavonol biosynthesis were suggested to be the main regulation pathway, which were regulated by metabolites apigenin, kaempferol, astragalin, isoquercitrin and genes TT7, UGT78D1, UGT78D2. This metabolic pathway involved the synthesis of flavonoids. Flavonoids have the characteristics of drought resistance and salt resistance, which play an important role in the adaptation of C. limonia in karst high calcium environment. This omics study identified key regulation metabolites and genes for Camellia and provided important basis for the adaptive mechanism of plants to adapt to the high-calcium environment and the protection of Camellia species.
{"title":"Adaptive Mechanism Exploration of Camellia limonia in Karst High Calcium Environment by Integrative Analysis of Metabolomics and Metagenomics","authors":"Chunni Liu, Yang Huang, Yu Liang","doi":"10.1007/s12042-021-09308-0","DOIUrl":"https://doi.org/10.1007/s12042-021-09308-0","url":null,"abstract":"<p><i>Camellia limonia</i> is a kind of rare plant with high economic and medicinal value. It’s a plant species growing in calcareous soil of limestone, which means they can grow well in high calcium environment. Compared with <i>C. limonia</i>, <i>Camellia nitidissima</i> is a plant growing in acidic soil, which grows slowly or even dies in high calcium environment. However, there are few studies on <i>C. limonia</i> in karst soil environment and its adaptation mechanism is no clear. In this study, we found that under high calcium treatment, the chlorophyll content and leaf areas of <i>C. limonia</i> increased, while those of <i>C. nitidissima</i> decreased. The photosynthetic efficiency of <i>C. limonia</i> was more stable and higher than <i>C. nitidissima</i>. Compared with <i>C. nitidissima</i>, the conductance was larger and the degree of leaf shrinkage was smaller in <i>C. limonia</i>. The metabolomics analysis of both leaves showed that the kaempferol-3-o-rutinoside, tyrosol, 6-o-methyldeacetylisoipecoside and (r)-mandelic acid are the main differently metabolic compounds. The results of metagenomics in karst soil showed that the secretion (propylene oxide) of <i>Acaryochloris marina</i> in rhizosphere is closely related to the adaptation of <i>C. nitidissima</i> in high-calcium regions. Through metabolomics and metageomics integrative analysis, flavone and flavonol biosynthesis were suggested to be the main regulation pathway, which were regulated by metabolites apigenin, kaempferol, astragalin, isoquercitrin and genes <i>TT7</i>, <i>UGT78D1</i>, <i>UGT78D2</i>. This metabolic pathway involved the synthesis of flavonoids. Flavonoids have the characteristics of drought resistance and salt resistance, which play an important role in the adaptation of <i>C. limonia</i> in karst high calcium environment. This omics study identified key regulation metabolites and genes for <i>Camellia</i> and provided important basis for the adaptive mechanism of plants to adapt to the high-calcium environment and the protection of <i>Camellia</i> species.</p>","PeriodicalId":54356,"journal":{"name":"Tropical Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138508400","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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