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The ZNF263/CPT1B axis regulates fatty acid β-oxidation to affect cisplatin resistance in lung adenocarcinoma. ZNF263/CPT1B轴调节脂肪酸β-氧化,从而影响肺腺癌的顺铂耐药性。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-11-05 DOI: 10.1038/s41397-024-00355-w
Renhe Yan, Caibin Zheng, Suting Qian, Kezhi Li, Xiangsheng Kong, Shunhang Liao

Cisplatin is widely used as a conventional chemotherapy drug for lung adenocarcinoma (LUAD) patients. However, the chemical resistance greatly limits its therapeutic potential. The study aimed to uncover the specific role and new mechanisms of CPT1B in the cisplatin resistance of LUAD. Bioinformatics analysis was utilized to analyze the expression level and enriched pathway of CPT1B in LUAD. The expression of CPT1B in LUAD cells was determined by utilizing quantitative reverse transcription polymerase chain reaction (qRT-PCR) and western blot (WB). The cisplatin resistance in LUAD was measured with IC50 values obtained from the CCK-8 assay. We used the corresponding reagent kit and WB analysis to determine the levels of triglycerides, cholesterol, phospholipids, fatty acid β-oxidation (FAO) rate, and expression of lipid metabolism-related proteins. Finally, the regulation relationship between CPT1B and ZNF263 was confirmed through bioinformatics analysis, dual-luciferase, and chromatin immunoprecipitation assays. The present investigation revealed that CPT1B was upregulated in LUAD, participating in fatty acid metabolism pathways. In vitro studies have shown that upregulation of CPT1B promoted cisplatin resistance in LUAD cells. This promotion effect induced by the high expression of CPT1B on cisplatin resistance in LUAD was weakened after the addition of the FAO inhibitor Etomoxir. Mechanistically, ZNF263 was capable of binding to the promoter of CPT1B to activate its transcription, thereby enhancing FAO and promoting cisplatin resistance in LUAD cells. In summary, ZNF263 enhances cisplatin resistance in LUAD cells by upregulating CPT1B expression. This study enriches the molecular mechanisms of LUAD chemotherapy resistance and provides new directions for exploring therapeutic targets for LUAD.

顺铂被广泛用作肺腺癌(LUAD)患者的常规化疗药物。然而,耐药性极大地限制了其治疗潜力。本研究旨在揭示 CPT1B 在 LUAD 顺铂耐药性中的特殊作用和新机制。该研究利用生物信息学分析方法分析了CPT1B在LUAD中的表达水平和富集途径。利用定量反转录聚合酶链反应(qRT-PCR)和免疫印迹(WB)测定了CPT1B在LUAD细胞中的表达。LUAD的顺铂耐药性是通过CCK-8检测法获得的IC50值测定的。我们使用相应的试剂盒和 WB 分析测定了甘油三酯、胆固醇、磷脂、脂肪酸 β-氧化(FAO)率和脂代谢相关蛋白的表达水平。最后,通过生物信息学分析、双荧光素酶和染色质免疫沉淀实验证实了 CPT1B 和 ZNF263 之间的调控关系。本研究发现,CPT1B在LUAD中上调,参与脂肪酸代谢途径。体外研究表明,CPT1B的上调促进了LUAD细胞对顺铂的耐药性。在加入FAO抑制剂Etomoxir后,CPT1B的高表达对LUAD顺铂耐药性的促进作用减弱。从机制上看,ZNF263能够与CPT1B的启动子结合,激活其转录,从而增强FAO,促进LUAD细胞对顺铂的耐药性。综上所述,ZNF263通过上调CPT1B的表达增强了LUAD细胞的顺铂耐药性。这项研究丰富了LUAD化疗耐药的分子机制,为探索LUAD的治疗靶点提供了新的方向。
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引用次数: 0
Cost analysis of CYP2C19 genetic testing in percutaneous coronary intervention patients. 经皮冠状动脉介入治疗患者的 CYP2C19 基因检测成本分析。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-08 DOI: 10.1038/s41397-024-00353-y
Samuel Huxley, James Moriarty, Mark A Hlatky, Ryan Lennon, Kent Bailey, Malcolm Bell, Nancy Geller, Amir Lerman, Verghese Mathew, Yves Rosenberg, Michael Farkouh, Charanjit Rihal, Bijan Borah, Naveen L Pereira

CYP2C19 loss of function (LOF) carriers undergoing percutaneous coronary intervention (PCI) have an increased risk of ischemic events when treated with clopidogrel. PCI patients in TAILOR-PCI were randomized to clopidogrel or genotype-guided (GG) therapy in which LOF carriers received ticagrelor and non-carriers clopidogrel. Direct medical costs associated with a GG approach have not been described before. TAILOR-PCI participants for whom direct medical costs were available for the duration from the date of PCI to one-year post PCI were included. Primary cost estimates were obtained from the Mayo Clinic Cost Data Warehouse. There were no differences in direct medical costs between the GG and clopidogrel groups (mean $20,682 versus $19,747, p = 0.11) however total costs were greater in the GG group (mean $21,245 versus $19,891, p = 0.02) which was primarily driven by ticagrelor costs. In conclusion the increased expense of a GG strategy post PCI as compared to clopidogrel for all is primarily driven by the cost of ticagrelor.

接受经皮冠状动脉介入治疗(PCI)的CYP2C19功能缺失(LOF)携带者在接受氯吡格雷治疗时发生缺血性事件的风险会增加。TAILOR-PCI中的PCI患者随机接受氯吡格雷或基因型指导(GG)疗法,其中LOF携带者接受替卡格雷治疗,非携带者接受氯吡格雷治疗。与 GG 方法相关的直接医疗成本以前从未描述过。TAILOR-PCI的参与者从PCI之日起至PCI术后一年内的直接医疗费用均可获得。主要成本估算来自梅奥诊所成本数据仓库。GG组和氯吡格雷组的直接医疗费用没有差异(平均为20,682美元对19,747美元,P = 0.11),但GG组的总费用更高(平均为21,245美元对19,891美元,P = 0.02),这主要是由替卡格雷费用引起的。总之,与氯吡格雷相比,PCI 后 GG 策略的费用增加主要是由替卡格雷的费用造成的。
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引用次数: 0
Effects and interaction of single nucleotide polymorphisms at the pharmacokinetic/pharmacodynamic site: insights from the Rotterdam study into metformin clinical response and dose titration. 单核苷酸多态性在药代动力学/药效学部位的影响和相互作用:鹿特丹研究对二甲双胍临床反应和剂量滴定的启示。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-07 DOI: 10.1038/s41397-024-00352-z
Soroush Mohammadi Jouabadi, Payam Peymani, Mitra Nekouei Shahraki, Jeroen G J van Rooij, Linda Broer, Anton J M Roks, Bruno H Stricker, Fariba Ahmadizar

Our study investigated the impact of genetic variations on metformin glycemic response in a cohort from the Rotterdam Study, comprising 14,926 individuals followed for up to 27 years. Among 1285 metformin users of European ancestry, using linear mixed models, we analyzed the association of single nucleotide polymorphisms (SNPs) and a Polygenic Risk Score (PRS) with glycemic response, measured by changes in metformin dosage or HbA1c levels. While individual genetic variants showed no significant association, rs622342 on SLC2A1 correlated with increased glycemic response only in metformin monotherapy patients (β = -2.09, P-value < 0.001). The collective effect of variants, as represented by PRS, weakly correlated with changes in metformin dosage (β = 0.023, P-value = 0.027). Synergistic interaction was observed between rs7124355 and rs8192675. Our findings suggest that while higher PRS correlates with increased metformin dosage, its modest effect size limits clinical utility, emphasizing the need for future research in diverse populations to refine genetic risk models.

我们的研究调查了鹿特丹研究队列中基因变异对二甲双胍血糖反应的影响,该队列由 14926 人组成,随访时间长达 27 年。在 1285 名欧洲血统的二甲双胍使用者中,我们使用线性混合模型分析了单核苷酸多态性(SNPs)和多基因风险评分(PRS)与血糖反应的关系,血糖反应通过二甲双胍剂量或 HbA1c 水平的变化来衡量。虽然单个基因变异没有显示出明显的相关性,但 SLC2A1 上的 rs622342 仅与二甲双胍单药治疗患者的血糖反应增加相关(β = -2.09,P 值为 0.05)。
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引用次数: 0
Clinical and economic outcomes of a pharmacogenomics-enriched comprehensive medication management program in a self-insured employee population 在自保员工群体中开展药物基因组学强化综合用药管理项目的临床和经济效果。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-10-02 DOI: 10.1038/s41397-024-00350-1
Maren S. Fragala, Murray Keogh, Steven E. Goldberg, Raymond A. Lorenz, Jeffrey A. Shaman
Clinical and economic outcomes from a pharmacogenomics-enriched comprehensive medication management program were evaluated over 26 months in a self-insured U.S. employee population (n = 452 participants; n = 1500 controls) using propensity matched pre-post design with adjusted negative binomial and linear regression models. After adjusting for baseline covariates, program participation was associated with 39% fewer inpatient (p = 0.05) and 39% fewer emergency department (p = 0.002) visits, and with 21% more outpatient visits (p < 0.001) in the follow-up period compared to the control group. Results show pharmacogenomics-enriched comprehensive medication management can favorably impact healthcare utilization in a self-insured employer population by reducing emergency department and inpatient visits and can offer the potential for cost savings. Self-insured employers may consider implementing pharmacogenomics-enriched comprehensive medication management to improve the healthcare of their employees.
我们采用倾向匹配前-后设计,并使用调整后的负二项式和线性回归模型,对美国自保员工群体(n = 452 名参与者;n = 1500 名对照组)在 26 个月内参加药物基因组学强化综合用药管理项目的临床和经济效果进行了评估。在对基线协变量进行调整后,参与该计划与住院病人减少 39% (p = 0.05)和急诊就诊次数减少 39% (p = 0.002)以及门诊就诊次数增加 21% (p = 0.003)相关。
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引用次数: 0
Extreme phenotype sampling and next generation sequencing to identify genetic variants associated with tacrolimus in African American kidney transplant recipients 通过极端表型取样和新一代测序技术,确定非裔美国肾移植受者中与他克莫司相关的基因变异。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-23 DOI: 10.1038/s41397-024-00349-8
Moataz E. Mohamed, Bin Guo, Baolin Wu, David P. Schladt, Amutha Muthusamy, Weihua Guan, Juan E. Abrahante, Guillaume Onyeaghala, Abdelrahman Saqr, Nathan Pankratz, Gaurav Agarwal, Roslyn B. Mannon, Arthur J. Matas, William S. Oetting, Rory P. Remmel, Ajay K. Israni, Pamala A. Jacobson, DeKAF Genomics and GEN03 Investigators, Casey R. Dorr
African American (AA) kidney transplant recipients (KTRs) have poor outcomes, which may in-part be due to tacrolimus (TAC) sub-optimal immunosuppression. We previously determined the common genetic regulators of TAC pharmacokinetics in AAs which were CYP3A5 *3, *6, and *7. To identify low-frequency variants that impact TAC pharmacokinetics, we used extreme phenotype sampling and compared individuals with extreme high (n = 58) and low (n = 60) TAC troughs (N = 515 AA KTRs). Targeted next generation sequencing was conducted in these two groups. Median TAC troughs in the high group were 7.7 ng/ml compared with 6.3 ng/ml in the low group, despite lower daily doses of 5 versus 12 mg, respectively. Of 34,542 identified variants across 99 genes, 1406 variants were suggestively associated with TAC troughs in univariate models (p-value < 0.05), however none were significant after multiple testing correction. We suggest future studies investigate additional sources of TAC pharmacokinetic variability such as drug-drug-gene interactions and pharmacomicrobiome.
非裔美国人(AA)肾移植受者(KTR)的治疗效果不佳,部分原因可能是他克莫司(TAC)的免疫抑制效果不理想。我们之前确定了 AAs 中 TAC 药代动力学的常见遗传调节因子,即 CYP3A5 *3、*6 和 *7。为了确定影响 TAC 药代动力学的低频变异,我们使用了极端表型取样,并比较了 TAC 谷值极高(n = 58)和极低(n = 60)的个体(N = 515 AA KTR)。在这两组人中进行了有针对性的新一代测序。尽管每日剂量分别为 5 毫克和 12 毫克,但高剂量组的中位 TAC 谷值为 7.7 纳克/毫升,而低剂量组为 6.3 纳克/毫升。在 99 个基因的 34,542 个已鉴定变异中,有 1406 个变异在单变量模型中与 TAC 谷值有提示性关联(p 值为 0.5)。
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引用次数: 0
STRIPE partners in precision medicine series: provider perspective STRIPE 合作伙伴精准医疗系列:医疗服务提供者视角。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-23 DOI: 10.1038/s41397-024-00348-9
Christine M. Formea, Paldeep Atwal, Kathryn Meintsma, Martin Dawes, Gary Marchant, Ben L. Kong, J. Shawn Jones, Sara L. Rogers
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引用次数: 0
A collaborative force for precision medicine progress: the STRIPE pharmacogenomics conference series 精准医学进步的合作力量:STRIPE 药物基因组学系列会议。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-15 DOI: 10.1038/s41397-024-00345-y
Sara L. Rogers, J. Shawn Jones, Ben L. Kong, Christine M. Formea, Jacob Awkal, Benjamin G. Brown
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引用次数: 0
STRIPE partners in precision medicine series: pharmacist perspective STRIPE 合作伙伴精准医疗系列:药剂师视角。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-14 DOI: 10.1038/s41397-024-00347-w
Ben L. Kong, Roseann S. Donnelly, Amina Abubakar, Henry M. Dunnenberger, J. Shawn Jones, Sara L. Rogers, David Kisor
{"title":"STRIPE partners in precision medicine series: pharmacist perspective","authors":"Ben L. Kong,&nbsp;Roseann S. Donnelly,&nbsp;Amina Abubakar,&nbsp;Henry M. Dunnenberger,&nbsp;J. Shawn Jones,&nbsp;Sara L. Rogers,&nbsp;David Kisor","doi":"10.1038/s41397-024-00347-w","DOIUrl":"10.1038/s41397-024-00347-w","url":null,"abstract":"","PeriodicalId":54624,"journal":{"name":"Pharmacogenomics Journal","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141977237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Understanding general practitioner and pharmacist preferences for pharmacogenetic testing in primary care: a discrete choice experiment 了解全科医生和药剂师对基层医疗机构药物基因检测的偏好:离散选择实验。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-09 DOI: 10.1038/s41397-024-00344-z
John H. McDermott, Videha Sharma, Glenda M. Beaman, Jessica Keen, William G. Newman, Paul Wilson, Katherine Payne, Stuart Wright
Pharmacogenetic testing in the United Kingdom’s National Health Service (NHS) has historically been reactive in nature, undertaken in the context of single gene-drug relationships in specialist settings. Using a discrete choice experiment we aimed to identify healthcare professional preferences for development of a pharmacogenetic testing service in primary care in the NHS. Respondents, representing two professions groups (general practitioners or pharmacists), completed one of two survey versions, asking them to select their preferred pharmacogenetic testing service in the context of a presentation of low mood or joint pain. Responses from 235 individuals were included. All respondents preferred pharmacogenetic testing over no testing, though preference heterogeneity was identified. Both professional groups, but especially GPs, were highly sensitive to service design, with uptake varying depending on the service offered. This study demonstrates uptake of a pharmacogenetic testing service is impacted by service design and highlights key areas which should be prioritised within future initiatives.
英国国民医疗服务体系(NHS)中的药物基因检测历来都是被动的,是在专科环境中针对单一基因与药物的关系进行的。通过离散选择实验,我们旨在确定医疗保健专业人员对在国民健康服务体系的初级保健中发展药物基因检测服务的偏好。代表两个专业群体(全科医生或药剂师)的受访者完成了两个调查版本中的一个,要求他们在出现情绪低落或关节疼痛的情况下选择自己喜欢的药物基因检测服务。235 人的回复被收录其中。与不进行检测相比,所有受访者都更倾向于进行药物基因检测,但也发现了偏好异质性。两个专业群体,尤其是全科医生,对服务设计高度敏感,接受程度因提供的服务而异。这项研究表明,药物基因检测服务的接受程度受服务设计的影响,并强调了在未来的举措中应优先考虑的关键领域。
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引用次数: 0
Unveiling the association between HMG-CoA reductase inhibitors and bladder cancer: a comprehensive analysis using Mendelian randomization, animal models, and transcriptomics 揭示 HMG-CoA 还原酶抑制剂与膀胱癌之间的关联:利用孟德尔随机化、动物模型和转录组学进行综合分析。
IF 2.9 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-07 DOI: 10.1038/s41397-024-00346-x
Houyi Wei, Zhilong Li, Kaiyu Qian, Wenzhi Du, Lingao Ju, Danni Shan, Mengxue Yu, Yayun Fang, Yi Zhang, Yu Xiao, Gang Wang, Xinghuan Wang
This study utilized Mendelian randomization (MR) analysis and genome-wide association study (GWAS) data to investigate the association between commonly prescribed drugs and bladder cancer (BLCA) risk. Our results revealed that HMG CoA reductase (HMGCR) inhibitors, specifically simvastatin, are significantly associated with reduced BLCA risk. We further showed that simvastatin could significantly inhibit BLCA proliferation and epithelial-mesenchymal transition in animal models, with transcriptomic data identifying several pathways associated with these processes. Higher expression of HMGCR were linked with BLCA development and progression, and certain blood lipids, such as lipoprotein particles and very low density lipoprotein (VLDL) cholesterol, might influence BLCA risk. These findings suggested that HMGCR inhibitors, particularly simvastatin, could be potential treatment options or adjuvant therapies for BLCA.
本研究利用孟德尔随机化(MR)分析和全基因组关联研究(GWAS)数据调查了常用处方药与膀胱癌(BLCA)风险之间的关联。我们的研究结果表明,HMG CoA 还原酶(HMGCR)抑制剂,特别是辛伐他汀,与膀胱癌风险的降低显著相关。我们进一步发现,辛伐他汀能在动物模型中显著抑制BLCA的增殖和上皮-间质转化,转录组数据确定了与这些过程相关的几条通路。HMGCR的高表达与BLCA的发生和发展有关,而某些血脂,如脂蛋白颗粒和极低密度脂蛋白(VLDL)胆固醇,可能会影响BLCA的风险。这些研究结果表明,HMGCR抑制剂,尤其是辛伐他汀,可能是治疗或辅助治疗BLCA的潜在选择。
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引用次数: 0
期刊
Pharmacogenomics Journal
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