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Microbial transformations of radionuclides: fundamental mechanisms and biogeochemical implications. 放射性核素的微生物转化:基本机制和生物地球化学意义。
Pub Date : 2005-12-01 DOI: 10.1201/9780849346071-8
J. Lloyd, J. Renshaw
This paper discusses fundamental mechanisms and biogeochemical implications of microbial transformations of radionuclides.
本文讨论了放射性核素微生物转化的基本机制及其生物地球化学意义。
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引用次数: 39
Anthropogenic impacts on the biogeochemistry and cycling of antimony. 人类活动对锑的生物地球化学和循环的影响。
Pub Date : 2005-03-01 DOI: 10.1201/9780849346071-12
W. Shotyk, M. Krachler, Bin Chen
Antimony is a potentially toxic trace element with no known biological function. Antimony is commonly enriched in coals, and fossil fuel combustion appears to be the largest single source of anthropogenic Sb to the global atmosphere. Abundant in sulfide minerals, its emission to the atmosphere from anthropogenic activities is linked to the mining and metallurgy of non-ferrous metals, especially Pb, Cu, and Zn. In particular, the geochemical and mineralogical association of Sb with Pb minerals implies that, like Pb, Sb has been emitted to the environment for thousands of years because of Pb mining, smelting, and refining. In the US alone, there are more than 400 former secondary lead smelting operations and worldwide there are 133 Pb-Zn smelters in operation today. Antimony is used in creating and improving dozens of industrial and commercial materials including various alloys, ceramics, glasses, plastics, and synthetic fabrics, making waste incineration another important source of Sb to the environment. Enrichments of Sb in atmospheric aerosols, plants, soils, sediments, as well as alpine and polar snow and ice suggest that Sb contamination is extensive, but there are very few quantitative studies of the geographic extent, intensity, and chronology of this contamination. There is an urgent need to quantify the extent of human impacts and how these have changed with time. The decreasing inventories of anthropogenic Sb with time in peat cores from Switzerland and Scotland suggest that the atmospheric Sb flux may be declining, but there have been too few studies to make any general conclusions. In fact, some studies of sediments and biomonitors in central Europe show little decline in Sb concentrations during the past decades. There is an obvious need for reliable data from well dated archives such as polar snow and ice, peat bogs, and sediments. The air concentrations, extent of enrichment, particle size distribution, and rate of deposition of Sb in urban areas is cause for concern. The natural processes which controlled the Sb flux to the atmosphere in the pre-anthropogenic past are poorly understood. The cumulative amount of anthropogenic Sb in soils has not yet been quantified. The long-term fate of Sb in soils, including weathering and mobilization, has only started to be investigated. However, the limited data available suggests that, in some locations at least, anthropogenic Sb in soils may be more mobile than anthropogenic Pb. Further study of this problem is needed, as well as the chemical speciation of Sb in soil-water-plant-sediment systems, and the implications which this has for human and ecosystem health.
锑是一种潜在的有毒微量元素,没有已知的生物学功能。锑通常富集于煤中,化石燃料燃烧似乎是全球大气中人为锑的最大单一来源。硫化物矿物丰富,人类活动向大气中排放的硫化物与有色金属,特别是铅、铜和锌的开采和冶金有关。特别是,Sb与Pb矿物的地球化学和矿物学关联表明,Sb与Pb一样,由于Pb的开采、冶炼和精炼,已经向环境中排放了数千年。仅在美国,就有400多家以前的二次铅冶炼企业,目前全球有133家铅锌冶炼厂在运营。锑被用于制造和改进几十种工业和商业材料,包括各种合金、陶瓷、玻璃、塑料和合成织物,使垃圾焚烧成为Sb对环境的另一个重要来源。大气气溶胶、植物、土壤、沉积物以及高山和极地冰雪中Sb的富集表明Sb污染是广泛的,但对这种污染的地理范围、强度和年代的定量研究很少。迫切需要量化人类影响的程度以及这些影响如何随时间变化。瑞士和苏格兰泥炭岩心中人为锑的库存随着时间的推移而减少,这表明大气锑通量可能正在下降,但研究太少,无法得出任何一般性结论。事实上,对中欧沉积物和生物监测仪的一些研究表明,在过去的几十年里,锑的浓度几乎没有下降。显然,我们需要从年代久远的档案中获得可靠的数据,如极地冰雪、泥炭沼泽和沉积物。城市地区Sb的空气浓度、富集程度、粒度分布和沉积速度令人担忧。在过去的前人类活动时期,控制Sb向大气的通量的自然过程尚不清楚。土壤中人为锑的累积量尚未量化。Sb在土壤中的长期命运,包括风化和动员,才刚刚开始研究。然而,现有的有限数据表明,至少在某些地区,土壤中人为的Sb可能比人为的Pb更具流动性。需要进一步研究这一问题,以及Sb在土壤-水-植物-沉积物系统中的化学形态,以及这对人类和生态系统健康的影响。
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引用次数: 45
Biogeochemistry of carbonates: recorders of past oceans and climate. 碳酸盐的生物地球化学:过去海洋和气候的记录。
Pub Date : 2005-03-01 DOI: 10.1201/9780849346071-14
R. Rickaby, D. Schrag
Trace metal proxies bound within the calcium carbonate tests of oceanic organisms provide a unique insight into how the climate system works on timescales which span eight orders of magnitude, from annual to hundreds of millions of years. Whilst the motivation for developing these proxies was the idea that thermodynamic equilibria control the chemistry during precipitation, in reality the application of trace metal proxies relies upon empirical calibration. Such calibration can be applied to a wide range of environmental reconstructions, but more accurate application of proxies requires a mechanistic understanding of the biomineralization process. The partitioning of trace metals into biogenic carbonates reflects to some extent the same pattern as an inorganic crystal, but there is an additional selectivity and differing environmental sensitivity to, e.g., temperature, which confirms that biochemical processes also play a role in the uptake and assembly of ions into a crystal. Different organisms display differing degrees of biological control on their carbonate chemistry. Aragonitic coral chemistry is most similar to inorganic precipitation from seawater whilst coccolithophores are most different, and these contrasts correlate with the degree of control of the organism over its biomineralization. Selectivity between Ca and trace metals during biomineralization arises during transport by pumps, channels, or nucleation upon an organic matrix. The biological selectivity of the transporters and matrix is strikingly similar in its base chemistry to the selective assembly of ions into a crystal. In each case, the selectivity between Ca2+ and trace metals derives from the balance between the energy required for dehydration of the hexaaqua complex of the cation, and the energy released from the new coordination geometry of binding with either carbonyl oxygen from polysaccharides or amino acids, or carbonate oxygen in the crystal. This is a speculative idea, but with some careful chemical calculations based on the energy of binding of Ca2+ or the trace metal ions to these macromolecular structures, it provides an alternative thermodynamic framework within which to consider the application of trace metal proxies.
海洋生物的碳酸钙测试中的微量金属代用物提供了一个独特的视角来了解气候系统是如何在八个数量级的时间尺度上工作的,从一年到数亿年。虽然开发这些代用物的动机是热力学平衡控制降水过程中的化学反应,但实际上痕量金属代用物的应用依赖于经验校准。这种校准可以应用于广泛的环境重建,但更准确地应用代理需要对生物矿化过程的机制理解。微量金属在生物碳酸盐中的分配在一定程度上反映了与无机晶体相同的模式,但存在额外的选择性和不同的环境敏感性,例如温度,这证实了生化过程在离子的吸收和组装成晶体中也起作用。不同的生物对其碳酸盐化学表现出不同程度的生物控制。文石珊瑚的化学性质与海水中的无机沉淀物最相似,而球石藻的化学性质则最不同,这些对比与生物对其生物矿化的控制程度有关。在生物矿化过程中,钙和微量金属之间的选择性在通过泵、通道或在有机基质上成核的运输过程中产生。转运体和基质的生物选择性在其基础化学上与离子选择性组装成晶体惊人地相似。在每种情况下,Ca2+和微量金属之间的选择性来自于阳离子的六水络合物脱水所需的能量和与多糖或氨基酸的羰基氧或晶体中的碳酸盐氧结合的新配位几何释放的能量之间的平衡。这是一个推测性的想法,但是根据Ca2+或微量金属离子与这些大分子结构的结合能进行一些仔细的化学计算,它提供了一个替代的热力学框架,在这个框架内考虑微量金属替代品的应用。
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引用次数: 6
Biogeochemistry of dihydrogen (H2). 二氢(H2)的生物地球化学。
Pub Date : 2005-01-01 DOI: 10.1201/9780824751999.ch2
Tori M Hoehler

Hydrogen has had an important and evolving role in Earth's geo- and biogeochemistry, from prebiotic to modern times. On the earliest Earth, abiotic sources of H2 were likely stronger than in the present. Volcanic out-gassing and hydrothermal circulation probably occurred at several times the modern rate, due to presumably higher heat flux. The H2 component of volcanic emissions was likely buffered close to the modern value by an approximately constant mantle oxidation state since 3.9 billion years ago, and may have been higher before that, if the early mantle was more reducing. The predominantly ultramafic character of the early, undifferentiated crust could have led to increased serpentinization and release of H2 by hydrothermal circulation, as in modern ultramafic-hosted vents. At the same time, the reactive atmospheric sink for H2 was likely weaker. Collectively, these factors suggest that steady state levels of H2 in the prebiotic atmosphere were 3-4 orders of magnitude higher than at present, and possibly higher still during transient periods following the delivery of Fe and Ni by large impact events. These elevated levels had direct or indirect impacts on the redox state of the atmosphere, the radiation budget, the production of aerosol hazes, and the genesis of biochemical precursor compounds. The early abiotic cycling of H2 helped to establish the environmental and chemical context for the origins of life on Earth. The potential for H2 to serve as a source of energy and reducing power, and to afford a means of energy storage by the establishment of proton gradients, could have afforded it a highly utilitarian role in the earliest metabolic chemistry. Some origin of life theories suggest the involvement of H2 in the first energy-generating metabolism, and the widespread and deeply-branching nature of H2-utilization in the modern tree of life suggests that it was at least a very early biochemical innovation. The abiotic production of H2 via several mechanisms of water-rock interaction could have supported an early chemosynthetic biosphere. Such processes offer the continued potential for a deep, rock-hosted biosphere on Earth or other bodies in the solar system. The continued evolution of metabolic and community-level versatility among microbes led to an expanded ability to completely exploit the energy available in complex organic matter. Under the anoxic conditions that prevailed on the early Earth, this was accomplished through the linked and sequential action of several metabolic classes of organisms. By transporting electrons between cells, H2 provides a means of linking the activities of these organisms into a highly functional and interactive network. At the same time, H2 concentrations exert a powerful thermodynamic control on many aspects of metabolism and biogeochemical function in these systems. Anaerobic communities based on the consumption of organic matter continue to play an important role in global biogeochemistry even

从益生元到现代,氢在地球的地质和生物地球化学中一直扮演着重要的角色。在早期的地球上,氢气的非生物来源可能比现在更强大。火山喷发和热液循环的发生速率可能是现代的几倍,这可能是由于较高的热通量。39亿年前,由于地幔的氧化状态近似恒定,火山排放物中的H2成分可能被缓冲到接近现代的值,如果早期地幔的还原程度更高,那么在此之前,H2成分可能更高。早期未分化地壳的超镁铁质特征可能导致了蛇纹岩化的增加,并通过热液循环释放H2,如现代的超镁铁质喷口。同时,H2的反应性大气汇可能较弱。综上所述,这些因素表明,益生元大气中H2的稳态水平比现在高3-4个数量级,在大型撞击事件传递铁和镍后的短暂时期可能还会更高。这些升高的水平对大气的氧化还原状态、辐射收支、气溶胶雾霾的产生和生化前体化合物的产生有直接或间接的影响。H2的早期非生物循环有助于建立地球上生命起源的环境和化学背景。氢气作为能量来源和降低功率的潜力,以及通过建立质子梯度提供能量储存的手段,可能使它在最早的代谢化学中发挥高度实用的作用。一些生命起源理论认为,H2参与了第一次能量生成代谢,而现代生命树中H2利用的广泛和深入的分支性质表明,它至少是一个非常早期的生化创新。通过水岩相互作用的几种机制产生的非生物H2可能支持了早期的化学合成生物圈。这样的过程提供了在地球或太阳系其他天体上持续存在深层岩石生物圈的可能性。微生物在代谢和群落水平上的多功能性的持续进化导致了完全利用复杂有机物中可用能量的能力的扩大。在地球早期普遍存在的缺氧条件下,这是通过几个代谢类生物的相互联系和顺序的作用来完成的。通过在细胞之间传递电子,H2提供了一种将这些生物体的活动连接到一个高度功能和相互作用的网络中的手段。同时,H2浓度对这些系统的代谢和生物地球化学功能的许多方面施加强大的热力学控制。即使到今天,以消耗有机物为基础的厌氧群落仍在全球生物地球化学中发挥着重要作用。作为大多数水生沉积物和动物消化系统的主要化学仲裁者,这些微生物影响着我们海洋和大气的氧化还原和痕量气体化学,并构成了进入岩石记录的物质的最终生物过滤器。正是在这样的群落中,H2介导生物地球化学功能的意义表现得最为强烈。光营养代谢的出现为微生物群落和H2在其中的作用增加了另一层复杂性。缺氧和富氧光养生物在代谢过程中保留和扩大了对H2的利用。这两组都通过不同的机制产生和消耗H2。在自然界中,通过形成生物膜和微生物席,光养生物经常与各种其他代谢类型紧密并列。在研究的几个例子中,光养生物对这些群落的H2经济做出了巨大贡献,这对它们的整体功能具有重要意义,包括调节气态产物的氧化还原状态,以及直接向环境释放大量H2。作为地球历史上20亿年生物生产力的主要来源之一,这些群落一直是长期全球生物地球化学变化的最重要因素之一。在现代地球上,大气和海洋中只有微量的氢。尽管如此,它作为微生物相互作用和化学的仲裁者的功能确保了它在生物地球化学循环中的重要作用。随着对替代燃料的研究将人们的注意力投向氢燃料电池的清洁能源潜力,氢在全球意义上的重要性可能很快会增加。H2利用已经在生命的所有三个系统发育领域发挥了重要作用。人类可能很快就会给这种经济增添一个重要的新术语。 相当多的研究集中在光养微生物和其他微生物作为这方面的潜在贡献者的生产h2的能力上。无论来源如何,大规模利用氢气作为能源可能对生物地球化学产生重要影响。
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引用次数: 24
Dioxygen over geological time. 地质年代的双氧。
Pub Date : 2005-01-01 DOI: 10.1201/9780824751999.ch3
Norman H Sleep
{"title":"Dioxygen over geological time.","authors":"Norman H Sleep","doi":"10.1201/9780824751999.ch3","DOIUrl":"https://doi.org/10.1201/9780824751999.ch3","url":null,"abstract":"","PeriodicalId":54739,"journal":{"name":"Metal Ions in Biological Systems","volume":"43 ","pages":"49-73"},"PeriodicalIF":0.0,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25763246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 30
Biological cycling of phosphorus. 磷的生物循环。
Pub Date : 2005-01-01 DOI: 10.1201/9780824751999.ch6
Bernhard Schink
{"title":"Biological cycling of phosphorus.","authors":"Bernhard Schink","doi":"10.1201/9780824751999.ch6","DOIUrl":"https://doi.org/10.1201/9780824751999.ch6","url":null,"abstract":"","PeriodicalId":54739,"journal":{"name":"Metal Ions in Biological Systems","volume":"43 ","pages":"131-51"},"PeriodicalIF":0.0,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25763249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
Speciation and bioavailability of trace metals in freshwater environments. 淡水环境中微量金属的形态和生物利用度。
Pub Date : 2005-01-01
Laura Sigg, Renata Behra
{"title":"Speciation and bioavailability of trace metals in freshwater environments.","authors":"Laura Sigg,&nbsp;Renata Behra","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":54739,"journal":{"name":"Metal Ions in Biological Systems","volume":"44 ","pages":"47-73"},"PeriodicalIF":0.0,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25149096","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bioavailability and biogeochemistry of metals in the terrestrial environment. 陆地环境中金属的生物利用度和生物地球化学。
Pub Date : 2005-01-01
Kerstin Michel, Bernard Ludwig
{"title":"Bioavailability and biogeochemistry of metals in the terrestrial environment.","authors":"Kerstin Michel,&nbsp;Bernard Ludwig","doi":"","DOIUrl":"","url":null,"abstract":"","PeriodicalId":54739,"journal":{"name":"Metal Ions in Biological Systems","volume":"44 ","pages":"75-96"},"PeriodicalIF":0.0,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25149097","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Atmospheric transport of metals. 金属的大气输送。
Pub Date : 2005-01-01 DOI: 10.1201/9780849346071-1
T. Berg, E. Steinnes
{"title":"Atmospheric transport of metals.","authors":"T. Berg, E. Steinnes","doi":"10.1201/9780849346071-1","DOIUrl":"https://doi.org/10.1201/9780849346071-1","url":null,"abstract":"","PeriodicalId":54739,"journal":{"name":"Metal Ions in Biological Systems","volume":"488 1","pages":"1-19"},"PeriodicalIF":0.0,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"65949985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
The biogeochemical cycles of the elements and the evolution of life. 元素的生物地球化学循环和生命的进化。
Pub Date : 2005-01-01 DOI: 10.1201/9780824751999.ch1
Peter M H Kroneck
{"title":"The biogeochemical cycles of the elements and the evolution of life.","authors":"Peter M H Kroneck","doi":"10.1201/9780824751999.ch1","DOIUrl":"https://doi.org/10.1201/9780824751999.ch1","url":null,"abstract":"","PeriodicalId":54739,"journal":{"name":"Metal Ions in Biological Systems","volume":"43 ","pages":"1-7"},"PeriodicalIF":0.0,"publicationDate":"2005-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1201/9780824751999.ch1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25763243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
期刊
Metal Ions in Biological Systems
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