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A Scientometric Study of Foraminiferal Research in Brazil 巴西有孔虫研究的科学计量研究
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-10-29 DOI: 10.2113/gsjfr.51.4.267
Beatriz Lima Vieira, Letícia Rizzetto Patrocínio, Douglas Villela de Oliveira Lessa, D. F. Gomes
Scientometrics is a field of study that involves measuring and analyzing scientific literature and can be a valuable tool to assess and reveal major gaps in national scientific production. Among the major challenges for Brazilian science is the development of research in the extensive national marine realm. This paper provides a scientometric survey of papers involving foraminiferal research in Brazil. The metrics utilized were papers listed in “Capes Portal” and “Scopus” databases up to the year of 2019. A total of 324 papers were found and 177 were selected based upon criteria established. A generalized additive model (GAM) was used to establish a relationship between publications and time. Studies involving foraminifera increased in Brazil from 1952 to 2019. Most studies have been conducted in the southeast region. We identified the need for more research on foraminifera to be carried out in the Brazilian continental margin, especially in the north and northeast regions of the country.
科学计量学是一个涉及测量和分析科学文献的研究领域,可以成为评估和揭示国家科学生产中重大差距的宝贵工具。巴西科学面临的主要挑战之一是发展广泛的国家海洋领域的研究。本文对巴西有孔虫研究论文进行了科学计量学调查。所使用的指标是截至2019年“Capes Portal”和“Scopus”数据库中列出的论文。共发现324篇论文,根据既定标准选出177篇。使用广义加性模型(GAM)来建立出版物与时间之间的关系。从1952年到2019年,巴西对有孔虫的研究有所增加。大多数研究都是在东南部地区进行的。我们确定需要在巴西大陆边缘,特别是在该国北部和东北部地区进行更多的有孔虫研究。
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引用次数: 0
Index to Volume 51, 2021 索引到第51卷,2021年
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-10-29 DOI: 10.2113/gsjfr.51.4.335
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引用次数: 0
Biovolume Method for Foraminiferal Biomass Assessment: Evaluation of Geometric Models and Incorporation of Species Mean Cell Occupancy 有孔虫生物量评估的生物体积法:几何模型的评估和物种平均细胞占用率的合并
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-10-29 DOI: 10.2113/gsjfr.51.4.249
Thaise Ricardo de Freitas, Eduardo Tadeu Bacalhau, S. T. Disaró
Foraminifers are widespread, highly abundant protists and active participants in marine carbon cycling. Their biomass might represent almost half of the total meiobenthic biomass in the deep sea. Foraminiferal biomass is frequently assessed through geometric models and biovolume estimates due to its non-destructive nature, which allows estimates of individuals from palaeoecological, museum, and living samples. To increase the accuracy of foraminiferal biovolume and biomass assessment we evaluate and propose geometric models for 207 foraminiferal taxa and the species’ average cell occupancy of the test. Individual test dimensions were measured to calculate volume (µm³), and the percent of cell occupancy (PCO) of the test was measured to assess the biovolume (µm³). These data were converted into individual biomass measurements (µg Corg ind−1). Our high intra- and interspecific PCO variance suggest that a mean PCO for each species represents the natural variability of occupancy more accurately than a predetermined fixed percentage for the whole assemblage, as previously asserted in the literature. Regression equations based on the relationship between test dimensions and volumes are presented. The geometric models, the PCO adjustment, and the equations will reduce time, effort, and discrepancies in foraminiferal biovolume and biomass assessments. Therefore, these results can improve the use and reliability of foraminiferal biomass in the future, facilitating its use in (1) distinct approaches including carbon flux estimations, (2) determining the effects of climate change on the marine trophic webs, and (3) environmental monitoring programs.
有孔虫是分布广泛、数量丰富的原生生物,是海洋碳循环的积极参与者。它们的生物量可能占深海中新生宙总生物量的近一半。有孔虫生物量经常通过几何模型和生物体积估算来评估,因为它是非破坏性的,这使得可以估计来自古生态、博物馆和活样本的个体。为了提高有孔虫生物体积和生物量评估的准确性,我们评估并提出了207个有孔虫类群的几何模型和实验中各物种的平均细胞占用率。测量单个测试尺寸以计算体积(µm³),并测量测试的细胞占用率(PCO)以评估生物体积(µm³)。这些数据被转换成单个生物量测量值(µg / d - 1)。我们的高种内和种间PCO差异表明,每个物种的平均PCO比先前文献中断言的整个组合的预定固定百分比更准确地代表了占用的自然变异性。给出了基于测试尺寸与体积关系的回归方程。几何模型、PCO调整和方程将减少有孔虫生物体积和生物量评估的时间、精力和差异。因此,这些结果可以提高有孔虫生物量在未来的使用和可靠性,促进其在以下方面的应用:(1)不同的方法,包括碳通量估算;(2)确定气候变化对海洋营养网的影响;(3)环境监测计划。
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引用次数: 2
Benthic Meiofaunal Diversity in Four Zones of Pichavaram Mangrove Forest, India 印度Pichavaram红树林四区底栖动物的多样性
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-10-29 DOI: 10.2113/gsjfr.51.4.294
R. Punniyamoorthy, P. Murugesan, G. Mahadevan, A. Sánchez
The community structure of meiofauna was assessed relative to environmental parameters in four zones (non-mangrove, Avicennia zone, mixed zone, and Rhizophora zone) of Pichavaram Mangrove Forest, which is located along the southeast coast of India. Field sampling was carried out from June 2016–May 2017. The meiofaunal data were evaluated using univariate and multivariate statistics. The highest abundance of meiofauna (434 ind/10 cm−2) was recorded in the Rhizophora zone and the lowest (270 ind/10 cm−2) in the non-mangrove zone. A total of 62 species representing four meiofaunal groups were recorded, including 38 species of foraminifera, 12 species of nematodes, seven species of ostracods, and five species of harpacticoids. Diversity (Shannon H′) mostly ranged from 3–4, and was highest (3.86±0.26) in the Avicennia zone and averaged ∼3.3 in the other three zones. The Margalef richness index was ∼6 in the Avicennia and Rhizophora zones and ∼5 in the non-mangrove and mixed zones. The BIO-ENV and CCA analyses identified sediment texture and organic matter as key variables influencing the distribution of meiofauna, while % calcium carbonate, salinity, and sediment pH were also important. Monitoring studies of meiofaunal taxa may help elucidate their roles in coastal blue-carbon cycling and will also contribute to understanding how mangrove-associated habitats influence meiofaunal distributions.
以印度东南沿海Pichavaram红树林为研究区(非红树林区、Avicennia区、混交区和Rhizophora区)为研究区,利用环境参数评价了该地区小型动物群落结构。现场采样于2016年6月至2017年5月进行。采用单变量和多变量统计方法对几次数据进行评估。其中,根藻带的数量最多(434 ind/10 cm−2),非红树林带的数量最少(270 ind/10 cm−2)。共记录到有孔虫38种,线虫12种,介形虫7种,棘虫5种,共4个小动物类群62种。多样性(Shannon H’)在3-4之间,Avicennia区最高(3.86±0.26),其他3个区平均为~ 3.3。阔叶树和根藻区阔叶树丰富度指数为~ 6,非红树林和混合区阔叶树丰富度指数为~ 5。BIO-ENV和CCA分析发现,沉积物质地和有机质是影响小型动物分布的关键变量,而碳酸钙%、盐度和沉积物pH值也很重要。对小型动物类群的监测研究可能有助于阐明它们在沿海蓝碳循环中的作用,也将有助于了解红树林相关栖息地如何影响小型动物的分布。
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引用次数: 3
Review: Freshwater and Soil Foraminifera – A Story of Long-Forgotten Relatives 回顾:淡水和土壤有孔虫-一个被遗忘已久的亲戚的故事
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-10-29 DOI: 10.2113/gsjfr.51.4.318
M. Holzmann, A. Gooday, F. Siemensma, J. Pawłowski
Foraminifera are a primarily marine taxon widespread in all oceanic habitats, from shallow, brackish-water settings to deep-seafloor and pelagic realms. Their diversity is remarkable with several thousand species described and a fossil record tracing back to the Cambrian. While foraminifera represent one of the best-studied groups of marine meiofauna, much less is known about their non-marine relatives. The first freshwater foraminifera were described in the 19th century by European and North American protozoologists, but interest in them lapsed during much of the 20th century and was not rekindled until the advent of molecular systematics provided a fresh impetus to their study. Several new species, genera, and families have been described recently based on morphological and molecular data derived from cultured specimens. In parallel, environmental genomic studies revealed that foraminifera are highly diverse and ubiquitous in freshwater and soil environments. Molecular phylogenetic analyses places non-marine foraminifera in a few clades among the large array of single-chambered (monothalamous) lineages, suggesting that several independent colonization events of freshwater and terrestrial habitats occurred. Non-marine foraminifera are turning from obscure curiosities to being recognized as an important part of soil and freshwater microbial communities, a major component of these complex environments.
有孔虫是一个主要分布在所有海洋栖息地的海洋分类单元,从浅水、半咸水环境到深海和远洋领域。它们的多样性非常显著,描述了数千个物种,化石记录可以追溯到寒武纪。虽然有孔虫是研究得最好的海洋小型动物群之一,但对它们的非海洋亲缘关系知之甚少。欧洲和北美原动物学家在19世纪描述了第一个淡水有孔虫,但在20世纪的大部分时间里,人们对它们的兴趣消失了,直到分子系统学的出现为他们的研究提供了新的动力,才重新燃起兴趣。根据培养标本的形态学和分子数据,最近描述了几个新的物种、属和科。与此同时,环境基因组研究表明,有孔虫在淡水和土壤环境中高度多样且普遍存在。分子系统发育分析将非海洋有孔虫放在大量单腔(单丘脑)谱系中的少数分支中,表明淡水和陆地栖息地发生了几次独立的定殖事件。非海洋有孔虫正从晦涩难懂的珍品转变为土壤和淡水微生物群落的重要组成部分,而土壤和淡水是这些复杂环境的主要组成部分。
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引用次数: 14
Predatory Drilling Traces on Recent Foraminifera from Chandipur Coast, India 印度昌迪普尔海岸新近有孔虫的捕食性钻探痕迹
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-10-28 DOI: 10.2113/GSJFR.51.4.286
Subhronil Mondal, Urbashi Sarkar
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引用次数: 0
Late Pliocene to Early Pleistocene Planktonic Foraminifera from Northern Indian Ocean (Andaman and Nicobar Islands): Interpretation on Cooling Event and Ocean Upwelling 北印度洋(安达曼和尼科巴群岛)晚上新世至早更新世浮游有孔虫:对冷却事件和海洋上升流的解释
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-07-31 DOI: 10.2113/gsjfr.51.3.115
R. Dey, Amit K. Ghosh, A. K. Bhaumik, A. Chakraborty, S. Saxena, L. Roy
Thirty-two planktonic foraminiferal taxa have been identified based on Bright Field microscopic study as well as Scanning Electron Microscopy on the samples collected from the outcrop adjacent to the type section of Neill West Coast Formation at Neil Island of Ritchie's Archipelago, northern Indian Ocean. The planktonic foraminiferal taxa belong to ten genera viz., Dentoglobigerina, Globigerina, Globigerinoides, Globoconella, Globorotalia, Globorotaloides, Globoturborotalita, Neogloboquadrina, Orbulina, and Trilobatus. A number of statistical analyses have been done in addition to taxonomic study to interpret the palaeocenographic scenario. We performed PCA analysis on the foraminiferal content of the samples to test the relatedness. Two biozones have been established by Stratigraphically Constrained Cluster Analysis (CONISS). We used SHEBI (SHE analysis for biozone identification) analysis to precisely demarcate seven biozones. Attempts have been made to decipher the Plio–Pleistocene boundary in the Neill West Coast Formation based on specific zonal markers. The presence of some taxa (e.g., Globoconella inflata, Globigerina bulloides, and Neogloboquadrina pachyderma) indicates the initiation of a cooling event from late Pliocene onwards. An event of ocean upwelling also has been identified based on the presence of Globigerina bulloides, Neogloboquadrina pachyderma, and N. dutertrei from the late Pliocene to early Pleistocene of the northern Indian Ocean that also correlates with palaeoceanographic records known from other upwelling regions.
通过对印度洋北部里奇群岛尼尔岛尼尔西海岸组类型剖面附近露头的样品进行亮场显微镜研究和扫描电子显微镜研究,确定了32个浮游有孔虫类群。浮游有孔虫分类群分属10属,即:Dentoglobigerina、Globigerina、Globigerinoides、Globoconella、Globorotalia、globorotalides、Globoturborotalita、negloboquadrina、Orbulina和Trilobatus。除了分类学研究外,还进行了一些统计分析来解释古地理情景。我们对样品的有孔虫含量进行PCA分析,以检验相关性。采用地层约束聚类分析(CONISS)方法建立了两个生物带。采用SHEBI (SHE analysis for biozone identification)分析方法,对7个生物区进行了精确划分。根据特定的地带性标志,对尼尔西海岸组的上新世-更新世界线进行了破译。一些分类群的出现(如膨胀Globoconella inflata、球状globoconina bulloides和厚皮新globoquadrina)表明了上新世晚期开始的降温事件。根据北印度洋上新世晚期至更新世早期gloigerina bulloides、Neogloboquadrina pachyderma和N. duterte的存在,还确定了一次海洋上升流事件,这也与其他上升流地区已知的古海洋记录相关联。
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引用次数: 0
Growth and Fecundity of Marginopora Vertebralis and Amphistegina Lobifera in Laboratory Culture 实验培养条件下顶叶缘孢和大叶角叉孢的生长和繁殖力
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-07-31 DOI: 10.2113/gsjfr.51.3.210
R. Naidu, M. Ford, P. Kench, P. Hallock, R. Prasad
The shells of large benthic foraminifers (LBF) are key contributors to the development and maintenance of coastal landforms in the Pacific as well as to Paleogene and Miocene carbonates deposited along the Neotethys Seaway and tropical Pacific islands. The current study assessed growth and fecundity of two species, Marginopora vertebralis and Amphistegina lobifera, collected from sites in Viti Levu, Fiji, based on shell diameter, shell weight, fecundity, and survival. Specimens were cultured without supplemental nutrients or food for 15 months under controlled laboratory conditions. Physicochemical parameters, including salinity, alkalinity, pH, and temperature, varied by <5% throughout the experiment. Asexual reproduction by M. vertebralis produced ∼270 offspring per brood, while A. lobifera produced ∼500 offspring per brood. The minimum size at reproduction for M. vertebralis was 15 mm, and A. lobifera reproduction occurred at diameters ≥0.9 mm. These observations were consistent with those of previous studies that predicted asexual fecundity related to parent size. Four non-linear mathematical functions (exponential, Gompertz, logistic, and von Bertalanffy) were compared to describe the age-weight relationship for each species. Results revealed that the logistic model best fits M. vertebralis growth, and von Bertalanffy model best fits A. lobifera growth. The growth model for A. lobifera predicted trends in juvenile growth and maximum size consistent with a previously published von Bertalanffy model based on cultures in which the foraminifers were provided nutrient sources and grew much faster than those observed in this study. These observations support published hypotheses that many LBF are exceptionally well-adapted to extreme oligotrophy, a characteristic that accounted for their dominance as carbonate producers in the Paleogene and Miocene of the Neotethys and Pacific islands.
大型底栖有孔虫(LBF)的壳对太平洋海岸地貌的发展和维持以及沿新特提斯海道和热带太平洋岛屿沉积的古近纪和中新世碳酸盐起着关键作用。目前的研究基于壳直径、壳重、繁殖力和存活率,评估了从斐济Viti Levu采集的两种物种——边际脊椎鱼(Marginopora vertebralis)和两栖虾(Amphistegina lobifera)的生长和繁殖力。在受控的实验室条件下,不添加营养或食物培养标本15个月。物理化学参数,包括盐度、碱度、pH值和温度,在整个实验过程中变化<5%。无性繁殖的M.脊椎虫每窝产生约270个后代,而A. lobifera每窝产生约500个后代。棘田鼠繁殖时的最小尺寸为15 mm,大叶田鼠繁殖时的最小尺寸≥0.9 mm。这些观察结果与先前预测无性繁殖能力与亲本大小有关的研究一致。比较了四种非线性数学函数(指数函数、Gompertz函数、logistic函数和von Bertalanffy函数)来描述每个物种的年龄-体重关系。结果表明,logistic模型最适合脊椎松的生长,von Bertalanffy模型最适合大叶松的生长。大叶虫的生长模型预测了幼虫的生长趋势和最大尺寸与先前发表的von Bertalanffy模型一致,该模型基于培养物,其中有孔虫提供营养来源,并且比本研究中观察到的生长速度快得多。这些观察结果支持了已发表的假设,即许多LBF非常好地适应了极端寡营养,这一特征解释了它们在新特提斯和太平洋岛屿的古近纪和中新世作为碳酸盐生产者的优势。
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引用次数: 0
Oxygen Isotope Offsets in Deep-Water Benthic Foraminifera 深水底栖有孔虫的氧同位素偏移
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-07-31 DOI: 10.2113/gsjfr.51.3.225
Janika Jöhnck, A. Holbourn, W. Kuhnt, N. Andersen
Despite the extensive use of the benthic foraminiferal oxygen isotope composition (δ18O) as a proxy for paleoclimatic reconstructions, uncertainties remain regarding the consistency of interspecies offsets and the environmental factors controlling 18O fractionation. We investigated δ18O offsets of some frequently used Uvigerina, Bulimina, and Cibicidoides species in core top samples from different hydrographic and sedimentary regimes in the South China Sea, Makassar Strait, and Timor Strait/Eastern Indian Ocean. The δ18O values of the epifaunal taxa Cibicidoides mundulus and Cibicidoides wuellerstorfi showed no significant offset in all investigated regions, whereas shallow infaunal Cibicidoides species exhibited higher variability and were less reliable. We found no offsets between species of Uvigerina and Bulimina and assume that these genera can be measured together and/or substituted. Our results show that epifaunal taxa are close to equilibrium with ambient seawater and thus provide more reliable records of past ice volume and/or bottom water temperature variations than infaunal taxa. Offsets among equilibrium calcite, epifaunal taxa, and infaunal taxa are not constant “vital effects” but are influenced by changing gradients in bottom to pore water pH and carbonate ion concentrations that depend on deep-water ventilation and export flux of particulate carbonate and organic carbon. Offsets between epifaunal and infaunal taxa varied between 0.58 and 0.73‰, depending on regional bottom and pore water conditions. Our findings highlight the importance of regional and temporal variations in organic carbon flux/degradation and dissolution of calcite that may lead to slight under- or overestimates of the amplitude of δ18O fluctuations, especially during times of rapidly changing calcite-saturation of bottom and pore water.
尽管广泛使用海底有孔虫氧同位素组成(δ18O)作为古气候重建的代表,但物种间偏移的一致性和控制18O分馏的环境因素仍存在不确定性。我们研究了南中国海、望加锡海峡和帝汶海峡/东印度洋不同水文和沉积制度的岩芯顶部样本中一些常用的乌维捷琳娜、布利米纳和西比奇代物种的δ18O偏移。表动物群Cibicidoides mundulus和Cibicidiides wuellerstorfi的δ18O值在所有研究区域都没有显示出显著的偏移,而浅表动物群的Cibicidaides物种表现出更高的变异性,可靠性较差。我们没有发现Uvigerina和Bulimina物种之间的偏移,并假设这些属可以一起测量和/或替换。我们的研究结果表明,表动物群与环境海水接近平衡,因此比表动物群更可靠地记录了过去的冰量和/或底层水温变化。平衡方解石、表动物群和海底类群之间的偏移并不是恒定的“重要影响”,而是受到底部至孔隙水pH和碳酸盐离子浓度变化梯度的影响,这些变化取决于深水通风和颗粒碳酸盐和有机碳的输出通量。表层动物群和底层动物群之间的偏移量在0.58‰至0.73‰之间,这取决于区域底层和孔隙水条件。我们的发现强调了有机碳通量/降解和方解石溶解的区域和时间变化的重要性,这可能导致δ18O波动幅度的轻微低估或高估,特别是在底层和孔隙水的方解石饱和度快速变化的时期。
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引用次数: 4
Oligocene Planktic Foraminiferal Taxonomy and Evolution: An Illustrated Revision of Ocean Drilling Program Site 803 渐新世浮游生物有孔虫分类与演化——海洋钻探项目803号点图解修订
IF 1.1 4区 地球科学 Q4 PALEONTOLOGY Pub Date : 2021-07-31 DOI: 10.2113/gsjfr.51.3.139
A. Fraass, R. Leckie
The Oligocene (33.9–23.0 Ma) has historically proven to be a difficult interval to examine with respect to planktic foraminifera; the tendency for many of the taxa to be basically globigerine in shape, with 4 or 5 chambers in the final whorl means differences between species are limited. Recently, an international working group has attempted to clarify the Oligocene planktic foraminiferal taxonomy, with the goal of establishing phylogenetically-consistent generic and species concepts. A relatively expanded and continuous Oligocene section recovered at Ocean Drilling Program Site 803 in the western equatorial Pacific was previously studied by Leckie et al. (1993) using fairly conservative species concepts. Since 1993, foraminiferal biostratigraphic datum age calibrations have changed, and so revised sedimentation rates for the 220-m thick Oligocene sequence are actually more constant than previously thought. As a part of the recent taxonomic revision, this site was reevaluated and numerous additional taxa are recorded at this location. Macroevolutionary rates are calculated from the occurrences, and increased extinction is found within the late Oligocene, counter to the expectations laid out in broader-scale macroevolutionary studies. An effort is made here to describe the diagnostic features, which can be used to distinguish all taxa under a standard binocular microscope. Finally, several figures of scanning electron microscope photomicrographs (from Site 803 and tropical Atlantic Ocean ODP Site 628) depict features used to describe and differentiate important, but difficult or homeomorphic taxa, with the hope that these figures can be used by other workers at the microscope attempting to do Oligocene taxonomy-based studies.
渐新世(33.9–23.0 Ma)在历史上被证明是一个很难对浮游有孔虫进行检查的时期;许多分类群的形状基本上是球形的,最后轮生有4或5个室,这意味着物种之间的差异是有限的。最近,一个国际工作组试图澄清渐新世浮游有孔虫的分类学,目的是建立系统发育上一致的属和种概念。Leckie et al。(1993)使用相当保守的物种概念。自1993年以来,有孔虫生物地层基准年龄校准发生了变化,因此220米厚渐新世层序的修正沉积速率实际上比以前认为的更恒定。作为最近分类学修订的一部分,对该地点进行了重新评估,并在该地点记录了许多额外的分类群。宏观进化率是根据这些事件计算出来的,在渐新世晚期发现了灭绝的增加,这与更大规模的宏观进化研究中提出的预期相反。本文致力于描述诊断特征,可用于在标准双目显微镜下区分所有分类群。最后,几张扫描电子显微镜显微照片(来自803号地点和热带大西洋ODP 628号地点)描绘了用于描述和区分重要但困难或同源分类群的特征,希望这些照片可以被显微镜下试图进行渐新世分类学研究的其他工作人员使用。
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引用次数: 1
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Journal of Foraminiferal Research
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