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Effects of the oral administration of glycosaminoglycans with or without native type II collagen on the articular cartilage transcriptome in an osteoarthritic-induced rabbit model. 口服含或不含原生 II 型胶原蛋白的糖胺聚糖对骨关节炎兔模型关节软骨转录组的影响
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-09-04 DOI: 10.1186/s12263-024-00749-2
Roger Mariné-Casadó, Cristina Domenech-Coca, Salvador Fernández, Andrea Costa, Sergi Segarra, Maria José López-Andreo, Francesc Puiggròs, José Joaquín Cerón, Daniel Martínez-Puig, Carme Soler, Vicente Sifre, Claudio Iván Serra, Antoni Caimari

Background: In a previous study, the 84-day administration of glycosaminoglycans (GAGs), with or without native collagen type II (NC), in an osteoarthritis (OA)-induced rabbit model slowed down OA progression, improved several micro- and macroscopic parameters and magnetic resonance imaging (MRI) biomarkers in cartilage, and increased hyaluronic acid levels in synovial fluid. To elucidate the potential underlying mechanisms, a transcriptomics approach was conducted using medial femoral condyle and trochlea samples.

Results: The administration of chondroitin sulfate (CS), glucosamine hydrochloride (GlHCl), and hyaluronic acid (HA), with (CGH-NC) or without (CGH) NC, strongly modulated several genes involved in chondrocyte extracellular matrix (ECM) remodeling and homeostasis when compared to non-treated rabbits (CTR group). Notably, both treatments shared the main mechanism of action, which was related to ECM modulation through the down-regulation of genes encoding proteolytic enzymes, such as ADAM metallopeptidase with thrombospondin type 1 motif, 9 (Adamts9), and the overexpression of genes with a relevant role in the synthesis of ECM components, such as aggrecan (Acan) in both CGH-NC and CGH groups, and fibronectin 1 (Fn1) and collagen type II, alpha 1 (Col2A1) in the CGH group. Furthermore, there was a significant modulation at the gene expression level of the mTOR signaling pathway, which is associated with the regulation of the synthesis of ECM proteolytic enzymes, only in CGH-NC-supplemented rabbits. This modulation could account for the better outcomes concerning the microscopic and macroscopic evaluations reported in these animals.

Conclusions: In conclusion, the expression of key genes involved in chondrocyte ECM remodeling and homeostasis was significantly modulated in rabbits in response to both CGH and CGH-NC treatments, which would partly explain the mechanisms by which these therapies exert beneficial effects against OA.

背景:在之前的一项研究中,在骨关节炎(OA)诱导的兔子模型中,服用含或不含原生Ⅱ型胶原蛋白(NC)的糖胺聚糖(GAGs)84天后,OA进展速度减慢,软骨中的一些微观和宏观参数及磁共振成像(MRI)生物标志物得到改善,滑液中的透明质酸水平升高。为了阐明潜在的内在机制,我们使用股骨内侧髁和蹄骨样本进行了转录组学研究:结果:与未接受治疗的兔子(CTR组)相比,接受硫酸软骨素(CS)、盐酸氨基葡萄糖(GlHCl)和透明质酸(HA)治疗(CGH-NC)或不接受(CGH)NC治疗的兔子能强烈调节参与软骨细胞细胞外基质(ECM)重塑和平衡的多个基因。值得注意的是,两种治疗方法的主要作用机制相同,都是通过下调编码蛋白水解酶的基因来调节细胞外基质,如具有血栓软骨素 1 型基序的 ADAM 金属肽酶 9(Adamts9)和 CTR 组、9(Adamts9),以及在 ECM 成分合成中起相关作用的基因的过表达,如 CGH-NC 组和 CGH 组中的 aggrecan(Acan),以及 CGH 组中的纤维连接蛋白 1(Fn1)和Ⅱ型胶原α1(Col2A1)。此外,只有在补充了 CGH-NC 的兔子中,mTOR 信号通路的基因表达水平才会发生明显变化,而该通路与 ECM 蛋白水解酶的合成调节有关。这种调节可能是这些动物在微观和宏观评估方面取得更好结果的原因:总之,兔子在接受CGH和CGH-NC治疗后,参与软骨细胞ECM重塑和平衡的关键基因的表达均发生了显著变化,这在一定程度上解释了这些疗法对OA产生有益影响的机制。
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引用次数: 0
Dry blood spots as a sampling strategy to identify insulin resistance markers during a dietary challenge. 干血点作为一种采样策略,可在饮食挑战过程中识别胰岛素抵抗标记物。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-29 DOI: 10.1186/s12263-024-00752-7
Stephany Gonçalves Duarte, Carlos M Donado-Pestana, Tushar H More, Larissa Rodrigues, Karsten Hiller, Jarlei Fiamoncini

This study aimed to identify markers of postprandial dysglycemia in the blood of self-described healthy individuals using dry blood spots (DBS) as a sampling strategy. A total of 54 volunteers, including 31 women, participated in a dietary challenge. They consumed a high-fat, high-sugar mixed meal and underwent multiple blood sampling over the course of 150 min to track their postprandial responses. Blood glucose levels were monitored with a portable glucometer and individuals were classified into two groups based on the glucose area under the curve (AUC): High-AUC (H-AUC) and Low-AUC (L-AUC). DBS sampling was performed at the same time points as the assessment of glycemia using Whatman 903 Protein Saver filter paper. A gas chromatography-mass spectrometry-based metabolite profiling was conducted in the DBS samples to assess postprandial changes in blood metabolome. Higher concentrations of metabolites associated with insulin resistance were observed in individuals from the H-AUC group, including sugars and sugar-derived products such as fructose and threonic acid, as well as organic acids and fatty acids such as succinate and stearic acid. Several metabolites detected in the GC-MS analysis remained unidentified, indicating that other markers of hyperglycemia remain to be discovered in DBS. Based on these observations, we demonstrated that the use of DBS as a non-invasive and inexpensive sampling tool allows the identification of metabolites markers of dysglycemia in the postprandial period.

这项研究旨在利用干血斑(DBS)作为采样策略,鉴定自称健康人血液中餐后血糖异常的标志物。包括 31 名女性在内的 54 名志愿者参加了饮食挑战。他们食用了高脂肪、高糖的混合膳食,并在 150 分钟内进行了多次血液采样,以跟踪他们的餐后反应。他们使用便携式血糖仪监测血糖水平,并根据血糖曲线下面积(AUC)将他们分为两组:高-AUC(H-AUC)和低-AUC(L-AUC)。在评估血糖的同一时间点,使用 Whatman 903 Protein Saver 滤纸进行 DBS 采样。在 DBS 样本中进行了基于气相色谱-质谱的代谢物分析,以评估餐后血液代谢组的变化。在H-AUC组中观察到与胰岛素抵抗相关的代谢物浓度较高,包括糖和糖衍生产物,如果糖和苏氨酸,以及有机酸和脂肪酸,如琥珀酸和硬脂酸。在气相色谱-质谱分析中检测到的几种代谢物仍未确定,这表明在 DBS 中仍有其他高血糖标记物有待发现。基于这些观察结果,我们证明了使用 DBS 作为一种无创、廉价的采样工具,可以鉴定餐后血糖异常的代谢物标记物。
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引用次数: 0
Protective effects of Nogo-B deficiency in NAFLD mice and its multiomics analysis of gut microbiology and metabolism. Nogo-B缺乏对非酒精性脂肪肝小鼠的保护作用及其对肠道微生物学和新陈代谢的多组学分析。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-24 DOI: 10.1186/s12263-024-00754-5
Xu Dong, Yu-Ting Xiong, Tingting He, Congyang Zheng, Junjie Li, Yingjie Zhuang, Yingjie Xu, Ye Xiu, Zhixin Wu, Xiaomei Zhao, Xiaohe Xiao, Zhaofang Bai, Lili Gao

Background: Nonalcoholic fatty liver disease (NAFLD) is a prevalent chronic liver ailment that can lead to serious conditions such as cirrhosis and hepatocellular carcinoma. Hepatic Nogo-B regulates glucose and lipid metabolism, and its inhibition has been shown to be protective against metabolic syndrome. Increasing evidence suggests that imbalances in the gut microbiota (GM) and lipid metabolism disorders are significant contributors to NAFLD progression. Nevertheless, it is not yet known whether Nogo-B can affect NAFLD by influencing the gut microbiota and metabolites. Hence, the aim of the present study was to characterize this process and explore its possible underlying mechanisms.

Methods: A NAFLD model was constructed by administering a high-fat diet (HFD) to Nogo-B-/- and WT mice from the same litter, and body weight was measured weekly in each group. The glucose tolerance test (GTT) and insulin tolerance test (ITT) were performed to assess blood glucose levels. At the end of the 12-week period, samples of serum, liver, and intestinal contents were collected and used for serum biochemical marker and inflammatory factor detection; pathology evaluation; and gut microbiome and metabolomics analysis. Spearman's correlation analysis was performed to determine possible correlations between differential gut microbiota and differential serum metabolites between groups.

Results: Nogo-B deficiency attenuated the effects of the HFD, including weight gain, liver weight gain, impaired glucose tolerance, hepatic steatosis, elevated serum lipid biochemicals levels, and liver function. Nogo-B deficiency suppressed M1 polarization and promoted M2 polarization, thus inhibiting inflammatory responses. Furthermore, Nogo-B-/--HFD-fed mice presented increased gut microbiota richness and diversity, decreased Firmicutes/Bacteroidota (F/B) ratios, and altered serum metabolites compared with those of WT-HFD-fed mice. During analysis, several differential gut microbiota, including Lachnoclostridium, Harryflintia, Odoribacter, UCG-009, and unclassified_f_Butyricoccaceae, were screened between groups. These microbiota were found to be positively correlated with upregulated purine metabolism and bile acid metabolites in Nogo-B deficiency, while they were negatively correlated with downregulated corticosterone and tricarboxylic acid cyclic metabolites in Nogo-B deficiency.

Conclusion: Nogo-B deficiency delayed NAFLD progression, as demonstrated by reduced hepatocellular lipid accumulation, attenuated inflammation and liver injury, and ameliorated gut microbiota dysbiosis and metabolic disorders. Importantly, Odoribacter was strongly positively correlated with ALB and taurodeoxycholic acid, suggesting that it played a considerable role in the influence of Nogo-B on the progression of NAFLD, a specific feature of NAFLD in Nogo-B-/- mice. The regulatio

背景:非酒精性脂肪肝(NAFLD)是一种普遍存在的慢性肝病,可导致肝硬化和肝细胞癌等严重疾病。肝脏 Nogo-B 调节葡萄糖和脂质代谢,抑制 Nogo-B 对代谢综合征有保护作用。越来越多的证据表明,肠道微生物群(GM)失衡和脂质代谢紊乱是导致非酒精性脂肪肝发展的重要因素。然而,Nogo-B 能否通过影响肠道微生物群和代谢物来影响非酒精性脂肪肝尚不得而知。因此,本研究旨在描述这一过程并探索其可能的内在机制:方法:通过给同窝的 Nogo-B-/- 和 WT 小鼠摄入高脂饮食(HFD)来构建非酒精性脂肪肝模型,每周测量各组小鼠的体重。进行葡萄糖耐量试验(GTT)和胰岛素耐量试验(ITT)以评估血糖水平。12 周结束时,收集血清、肝脏和肠道内容物样本,用于血清生化标记物和炎症因子检测、病理学评估、肠道微生物组和代谢组学分析。进行了斯皮尔曼相关分析,以确定组间肠道微生物群差异与血清代谢物差异之间可能存在的相关性:结果:Nogo-B的缺乏减轻了高纤维食物的影响,包括体重增加、肝脏重量增加、糖耐量受损、肝脏脂肪变性、血清脂质生化水平升高和肝功能。缺乏Nogo-B会抑制M1极化,促进M2极化,从而抑制炎症反应。此外,与WT-HFD喂养的小鼠相比,Nogo-B-/-HFD喂养的小鼠肠道微生物群丰富度和多样性增加,固醇菌/类杆菌(F/B)比率降低,血清代谢物发生改变。在分析过程中,筛选出了几种不同组间的肠道微生物群,包括Lachnoclostridium、Harryflintia、Odoribacter、UCG-009和未分类的_f_Butyricoccaceae。研究发现,在Nogo-B缺乏症中,这些微生物群与上调的嘌呤代谢和胆汁酸代谢产物呈正相关,而在Nogo-B缺乏症中,它们与下调的皮质酮和三羧酸环代谢产物呈负相关:结论:Nogo-B缺乏症可延缓非酒精性脂肪肝的进展,表现为减少肝细胞脂质积累、减轻炎症和肝损伤、改善肠道微生物群失调和代谢紊乱。重要的是,Odoribacter与ALB和牛磺脱氧胆酸呈强正相关,表明它在Nogo-B对非酒精性脂肪肝进展的影响中发挥了相当大的作用,这是Nogo-B-/-小鼠非酒精性脂肪肝的一个特殊特征。肠道微生物群对胆汁酸代谢的调控可能是Nogo-B缺乏症改善非酒精性脂肪肝的潜在靶点。
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引用次数: 0
miR-450a-2-3p targets ERK(1/2) to ameliorate ISO-induced cardiac fibrosis in mice. miR-450a-2-3p 靶向 ERK(1/2),改善 ISO 诱导的小鼠心脏纤维化。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-19 DOI: 10.1186/s12263-024-00753-6
Langsha Liu, Fanyan Luo

Objective: Cardiac fibrosis is an important contributor to atrial fibrillation (AF). Our aim was to identify biomarkers for AF using bioinformatics methods and explore the regulatory mechanism of miR-450a-2-3p in cardiac fibrosis in mice.

Methods: Two datasets, GSE115574 and GSE79768, were obtained from the Gene Expression Omnibus (GEO) database and subsequently merged for further analysis. Differential gene expression analysis was performed to identify differentially expressed genes (DEGs) and miR-450a-2-3p-related differentially expressed genes (MRDEGs). To investigate the underlying mechanism of cardiac fibrosis, a mouse model was established by treating mice with isoproterenol (ISO) and the miR-450a-2-3p agomir.

Results: A total of 127 DEGs and 31 MRDEGs were identified and subjected to Gene Ontology (GO) functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis to determine the functions and pathways involved in AF. In the animal model, histological analysis using HE and Masson staining, as well as quantification of the collagen volume fraction (CVF), was performed. The increased expression of α-smooth muscle actin (α-SMA), collagen type I (COL1), collagen type III (COL3), and extracellular signal-regulated kinase 1/2 (ERK(1/2)) at both the transcriptional and translational levels indicated the significant development of myocardial fibrosis in mice induced with isoproterenol (ISO). In addition, the cross-sectional area of cardiomyocytes and the expression of atrial natriuretic peptide (NPPA) and brain natriuretic peptide (NPPB) were increased in the ISO group compared with the control group. However, after overexpression of the miR-450a-2-3p agomir through caudal vein injection, there was a notable improvement in cardiac morphology in the treated group. The expression levels of α-SMA, COL1, COL3, ERK(1/2), NPPA, and NPPB were also significantly decreased.

Conclusion: Our study reveals the mechanistic connection between ISO-induced myocardial fibrosis and the miR-450a-2-3p/ERK(1/2) signaling pathway, highlighting its role in the development of cardiac fibrosis. Modulating miR-450a-2-3p expression and inhibiting ERK(1/2) activation are promising approaches for therapeutic intervention in patients with AF.

目的:心脏纤维化是心房颤动(AF)的重要诱因。我们的目的是利用生物信息学方法确定心房颤动的生物标志物,并探索 miR-450a-2-3p 在小鼠心脏纤维化中的调控机制:从基因表达总库(Gene Expression Omnibus,GEO)数据库中获取了两个数据集(GSE115574和GSE79768),随后将其合并进行进一步分析。通过差异基因表达分析确定了差异表达基因(DEGs)和与 miR-450a-2-3p 相关的差异表达基因(MRDEGs)。为了研究心脏纤维化的内在机制,研究人员用异丙肾上腺素(ISO)和miR-450a-2-3p激动剂处理小鼠,建立了小鼠模型:结果:共鉴定出127个DEGs和31个MRDEGs,并对其进行了基因本体(GO)功能富集分析和京都基因组百科全书(KEGG)通路富集分析,以确定房颤所涉及的功能和通路。在动物模型中,使用 HE 和 Masson 染色法进行了组织学分析,并对胶原体积分数(CVF)进行了量化。α-平滑肌肌动蛋白(α-SMA)、I型胶原蛋白(COL1)、III型胶原蛋白(COL3)和细胞外信号调节激酶1/2(ERK(1/2))在转录和转译水平上的表达增加表明,异丙肾上腺素(ISO)诱导的小鼠心肌纤维化显著发展。此外,与对照组相比,ISO 组心肌细胞的横截面积以及心房利钠肽(NPPA)和脑利钠肽(NPPB)的表达均有所增加。然而,通过尾静脉注射过表达 miR-450a-2-3p 激动剂后,治疗组的心脏形态明显改善。α-SMA、COL1、COL3、ERK(1/2)、NPPA 和 NPPB 的表达水平也明显下降:我们的研究揭示了ISO诱导的心肌纤维化与miR-450a-2-3p/ERK(1/2)信号通路之间的机理联系,突出了其在心肌纤维化发展中的作用。调节miR-450a-2-3p的表达和抑制ERK(1/2)的激活是对房颤患者进行治疗干预的可行方法。
{"title":"miR-450a-2-3p targets ERK(1/2) to ameliorate ISO-induced cardiac fibrosis in mice.","authors":"Langsha Liu, Fanyan Luo","doi":"10.1186/s12263-024-00753-6","DOIUrl":"10.1186/s12263-024-00753-6","url":null,"abstract":"<p><strong>Objective: </strong>Cardiac fibrosis is an important contributor to atrial fibrillation (AF). Our aim was to identify biomarkers for AF using bioinformatics methods and explore the regulatory mechanism of miR-450a-2-3p in cardiac fibrosis in mice.</p><p><strong>Methods: </strong>Two datasets, GSE115574 and GSE79768, were obtained from the Gene Expression Omnibus (GEO) database and subsequently merged for further analysis. Differential gene expression analysis was performed to identify differentially expressed genes (DEGs) and miR-450a-2-3p-related differentially expressed genes (MRDEGs). To investigate the underlying mechanism of cardiac fibrosis, a mouse model was established by treating mice with isoproterenol (ISO) and the miR-450a-2-3p agomir.</p><p><strong>Results: </strong>A total of 127 DEGs and 31 MRDEGs were identified and subjected to Gene Ontology (GO) functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis to determine the functions and pathways involved in AF. In the animal model, histological analysis using HE and Masson staining, as well as quantification of the collagen volume fraction (CVF), was performed. The increased expression of α-smooth muscle actin (α-SMA), collagen type I (COL1), collagen type III (COL3), and extracellular signal-regulated kinase 1/2 (ERK(1/2)) at both the transcriptional and translational levels indicated the significant development of myocardial fibrosis in mice induced with isoproterenol (ISO). In addition, the cross-sectional area of cardiomyocytes and the expression of atrial natriuretic peptide (NPPA) and brain natriuretic peptide (NPPB) were increased in the ISO group compared with the control group. However, after overexpression of the miR-450a-2-3p agomir through caudal vein injection, there was a notable improvement in cardiac morphology in the treated group. The expression levels of α-SMA, COL1, COL3, ERK(1/2), NPPA, and NPPB were also significantly decreased.</p><p><strong>Conclusion: </strong>Our study reveals the mechanistic connection between ISO-induced myocardial fibrosis and the miR-450a-2-3p/ERK(1/2) signaling pathway, highlighting its role in the development of cardiac fibrosis. Modulating miR-450a-2-3p expression and inhibiting ERK(1/2) activation are promising approaches for therapeutic intervention in patients with AF.</p>","PeriodicalId":55123,"journal":{"name":"Genes and Nutrition","volume":"19 1","pages":"16"},"PeriodicalIF":3.3,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334388/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142005968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of diet in cancer: the potential of shaping public policy and clinical outcomes in the UK. 饮食在癌症中的作用:塑造英国公共政策和临床结果的潜力。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-03 DOI: 10.1186/s12263-024-00750-9
Oliver Britten, Sabrina Tosi

Cancer universally represents one of the largest public health concerns, substantially contributing to global disease burden and mortality. The multifaceted interplay of environmental and genetic factors in the disease aetiology and progression has required comprehensive research to elucidate modifiable elements which can reduce the risk of incidence and improve prognosis. Among these factors, diet and nutrition have emerged as the most fundamental with a significant potential for influence and effect. Nutrition is not only an essential part of human survival, but also a vital determinant of overall health. Certain dietary requirements are necessary to support normal physiology. This includes individualised levels of macronutrients (proteins, carbohydrates and fats) and specific micronutrients (vitamins and minerals). Extensive research has demonstrated that diet plays a role in cancer pathogenesis at the genetic, epigenetic and cellular level. Therefore, its potential as a modifiable determinant of cancer pathogenesis for the purpose of prevention and improving management of disease must be further explored and implemented. The ability to influence cancer incidence and outcomes through dietary changes is underutilised in clinical practice and insufficiently recognised among the general public, healthcare professionals and policy-makers. Dietary changes offer the opportunity for autonomy and control over individuals health outcomes. Research has revealed that particular dietary components, as well as cultural behaviours and epidemiological patterns may act as causative or protective factors in cancer development. This review aims to comprehensively synthesise this research to further explore how to best utilise this knowledge within the community and clinical environment for more effective cancer prevention and therapeutic strategies. The identified key areas for improvement include the development of more specific, widely accepted guidelines, promoting increased involvement of dieticians within cancer multidisciplinary teams, enhancing nutritional education for healthcare professionals and exploring the potential implementation of personalised nutrition tools. A greater understanding of the complex interactions between diet and cancer will facilitate informed clinical interventions and public health policies to reduce global cancer burden and improve care for cancer patients and survivors.

癌症是最大的公共卫生问题之一,在全球疾病负担和死亡率中占很大比重。环境和遗传因素在疾病的病因学和发展过程中起着多方面的相互作用,这就要求进行全面的研究,以阐明可以降低发病风险和改善预后的可改变因素。在这些因素中,饮食和营养是最基本的因素,具有重要的潜在影响和作用。营养不仅是人类生存的重要组成部分,也是整体健康的重要决定因素。某些饮食要求是支持正常生理所必需的。这包括个性化的宏量营养素(蛋白质、碳水化合物和脂肪)和特定的微量营养素(维生素和矿物质)。大量研究表明,饮食在基因、表观遗传学和细胞水平上对癌症发病起着作用。因此,必须进一步探索和实施饮食作为癌症发病机制的可调节决定因素的潜力,以达到预防和改善疾病管理的目的。在临床实践中,通过改变膳食来影响癌症发病率和预后的能力未得到充分利用,公众、医疗保健专业人员和政策制定者也未充分认识到这一点。膳食改变为个人自主控制健康结果提供了机会。研究表明,特定的饮食成分以及文化行为和流行病学模式可能是癌症发生的致病因素或保护因素。本综述旨在对这些研究进行全面总结,进一步探讨如何在社区和临床环境中更好地利用这些知识,制定更有效的癌症预防和治疗策略。已确定的主要改进领域包括制定更具体、更广为接受的指南,促进营养师更多地参与癌症多学科团队,加强对医疗保健专业人员的营养教育,以及探索个性化营养工具的潜在应用。进一步了解饮食与癌症之间复杂的相互作用将有助于采取知情的临床干预措施和公共卫生政策,从而减轻全球癌症负担,改善对癌症患者和幸存者的护理。
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引用次数: 0
Homocysteine, blood pressure and gene-diet interactions in relation to vascular function measures of black South Africans. 同型半胱氨酸、血压和基因-饮食相互作用与南非黑人血管功能测量的关系。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-08-01 DOI: 10.1186/s12263-024-00751-8
Jacomina P du Plessis, Leandi Lammertyn, Aletta E Schutte, Cornelie Nienaber-Rousseau

Background and aims: We investigated circulating homocysteine (Hcy), a cardiovascular disease (CVD) risk factor, examining its dietary associations to provide personalized nutrition advice. This study addressed the inadequacy of current dietary interventions to ultimately address the disproportionately high incidence of CVD in Black populations.

Methods and results: Cross-sectional analyses of 1,867 Black individuals of the PURE-SA study allowed the identification of dietary intake and cardiovascular measure interactions on three sub-categories: (1) normal blood pressure (BP), hypertension or Hcy-related hypertension (H-type), (2) low, normal or high Hcy concentrations, and (3) Hcy-related genetic combinations. Favorable body composition, but adverse dietary intake and cardiovascular determinants, were observed in higher Hcy categories. H-types, compared to regular hypertensives, had higher alcohol and lower macronutrient and micronutrient consumption. Inverse associations with carotid-radial pulse wave velocity were evident between monounsaturated fatty acid (FA) consumption and H-type hypertension as well as polyunsaturated FA and CBS883/ins68 TT carriers. Energy intake was positively associated with vascular cell adhesion molecule-1 (VCAM-1) in variant CBST883C/ins68 and CBS9276 GG carriers. VCAM-1 was also positively associated with plant protein intake in CBS9276 GG and MTR2756 AA carriers and negatively with total protein intake and CBS9276 GG carriers. Alcohol intake was positively associated with intercellular adhesion molecule-1 in MTR2756 minor allele carriers.

Conclusion: Because Hcy gene-diet interactions are evident, personalized nutrition, by adjusting diets based on genetic profiles (e.g., CBS and MTR variations) and dietary interactions (e.g., FAs and proteins), can enhance cardiovascular outcomes by managing Hcy and related hypertension in genetically susceptible individuals.

背景和目的:我们调查了心血管疾病(CVD)风险因素--循环同型半胱氨酸(Hcy),研究其与膳食的关系,以提供个性化的营养建议。这项研究探讨了目前的膳食干预措施不足以最终解决黑人心血管疾病发病率过高的问题:对 PURE-SA 研究中的 1867 名黑人进行横断面分析后,确定了膳食摄入量与心血管指标在三个子类别上的相互作用:(1)正常血压(BP)、高血压或 Hcy 相关高血压(H 型);(2)低、正常或高 Hcy 浓度;(3)Hcy 相关遗传组合。在 Hcy 较高的类别中,可以观察到有利的身体组成,但不利的饮食摄入和心血管决定因素。与普通高血压患者相比,H 型患者的酒精摄入量较高,宏量营养素和微量营养素摄入量较低。单不饱和脂肪酸(FA)摄入量与 H 型高血压以及多不饱和脂肪酸和 CBS883/ins68 TT 携带者之间存在明显的颈动脉径向脉搏波速度反向关系。在变异 CBST883C/ins68 和 CBS9276 GG 携带者中,能量摄入量与血管细胞粘附分子-1(VCAM-1)呈正相关。在 CBS9276 GG 和 MTR2756 AA 基因携带者中,VCAM-1 与植物蛋白摄入量呈正相关,而在 CBS9276 GG 基因携带者中,VCAM-1 与总蛋白摄入量呈负相关。在 MTR2756 小等位基因携带者中,酒精摄入量与细胞间粘附分子-1 呈正相关:结论:由于 Hcy 基因与膳食的相互作用非常明显,因此根据基因图谱(如 CBS 和 MTR 变异)和膳食相互作用(如脂肪酸和蛋白质)调整膳食,进行个性化营养,可通过控制遗传易感人群的 Hcy 和相关高血压,改善心血管预后。
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引用次数: 0
Exploring the therapeutic potential of garlic in alcoholic liver disease: a network pharmacology and experimental validation study. 探索大蒜对酒精性肝病的治疗潜力:一项网络药理学和实验验证研究。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-07-23 DOI: 10.1186/s12263-024-00748-3
Siqi Gao, Tingting Gao, Lizheng Li, Shule Wang, Jie Hu, Ruijing Zhang, Yun Zhou, Honglin Dong

Objective: Employing network pharmacology and molecular docking, the study predicts the active compounds in garlic and elucidates their mechanism in inhibiting the development of alcoholic liver disease (ALD). ALD is a global chronic liver disease with potential for hepatocellular carcinoma progression.

Methods: The main active ingredients and targets of garlic were identified through screening the TCMSP, TCM-ID, and ETCM databases. ALD disease targets were sourced from DisGeNET, GeneCards, and DiGSeE databases, and intervention targets for garlic were determined through intersections. Protein interaction networks were constructed using the STRING platform, and GO and KEGG pathway enrichment analyses were performed with R software. The garlic component-disease-target network was established using Cytoscape software. Validation of active ingredients against core targets was conducted through molecular docking simulations using AutoDock Vina software. Expression validation of core targets was carried out using human sequencing data of ALD obtained from the GEO database.

Results: Integration of garlic drug targets with ALD disease targets identified 83 target genes. Validation through an alcohol-induced ALD mouse model supported certain network pharmacology findings, suggesting that garlic may impede disease progression by mitigating the inflammatory response and promoting ethanol metabolism.

Conclusion: This study provides insights into the potential therapeutic mechanisms of garlic in inhibiting ALD development. The identified active ingredients offer promising avenues for further investigation and development of treatments for ALD, emphasizing the importance of botanical remedies in liver disease management.

研究目的该研究利用网络药理学和分子对接,预测大蒜中的活性化合物,并阐明其抑制酒精性肝病(ALD)发展的机制。酒精性肝病(ALD)是一种全球性慢性肝病,有可能诱发肝细胞癌:方法:通过对 TCMSP、TCM-ID 和 ETCM 数据库的筛选,确定了大蒜的主要活性成分和靶点。ALD 疾病靶点来自 DisGeNET、GeneCards 和 DiGSeE 数据库,大蒜的干预靶点通过交叉确定。使用 STRING 平台构建了蛋白质相互作用网络,并使用 R 软件进行了 GO 和 KEGG 通路富集分析。使用 Cytoscape 软件建立了大蒜成分-疾病-靶标网络。使用 AutoDock Vina 软件进行分子对接模拟,验证活性成分与核心靶标的关系。利用从 GEO 数据库获得的 ALD 人类测序数据对核心靶点进行了表达验证:结果:大蒜药物靶点与 ALD 疾病靶点的整合确定了 83 个靶基因。通过酒精诱导的 ALD 小鼠模型进行的验证支持了某些网络药理学发现,表明大蒜可通过减轻炎症反应和促进乙醇代谢来阻碍疾病进展:本研究深入探讨了大蒜抑制 ALD 发展的潜在治疗机制。已确定的活性成分为进一步研究和开发 ALD 治疗方法提供了很好的途径,强调了植物疗法在肝病治疗中的重要性。
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引用次数: 0
Correction: Tracing vitamins on the long non-coding lane of the transcriptome: vitamin regulation of LncRNAs. 更正:在转录组的非编码长道上追踪维生素:维生素对 LncRNA 的调控。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-06-18 DOI: 10.1186/s12263-024-00746-5
Fatemeh Yazarlou, Fatemeh Alizadeh, Leonard Lipovich, Roberta Giordo, Soudeh Ghafouri-Fard
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引用次数: 0
Genetic association between FADS and ELOVL polymorphisms and the circulating levels of EPA/DHA in humans: a scoping review. 人类 FADS 和 ELOVL 多态性与 EPA/DHA 循环水平之间的遗传关联:范围综述。
IF 3.3 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-06-06 DOI: 10.1186/s12263-024-00747-4
Insaf Loukil, David M Mutch, Mélanie Plourde

Background: Docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) are two omega-3 fatty acids that can be synthesized out of their precursor alpha-linolenic acid (ALA). FADS and ELOVL genes encode the desaturase and elongase enzymes required for EPA and DHA synthesis from ALA; however, single nucleotide polymorphisms (SNPs) in FADS and ELOVL genes could modify the levels of EPA and DHA synthesized from ALA although there is no consensus in this area. This review aims to investigate EPA and DHA circulating levels in human blood and their association with FADS or ELOVL.

Methods: PubMed, Cochrane, and Scopus databases were used to identify research articles. They were subsequently reviewed by two independent investigators.

Results: Initially, 353 papers were identified. After removing duplicates and articles not meeting inclusion criteria, 98 full text papers were screened. Finally, this review included 40 studies investigating FADS and/or ELOVL polymorphisms. A total of 47 different SNPs in FADS genes were reported. FADS1 rs174537, rs174547, rs174556 and rs174561 were the most studied SNPs, with minor allele carriers having lower levels of EPA and DHA. SNPs in the FADS genes were in high linkage disequilibrium. SNPs in FADS were correlated with levels of EPA and DHA. No conclusion could be drawn with the ELOVL polymorphisms since the number of studies was too low.

Conclusion: Specific SNPs in FADS gene, such as rs174537, have strong associations with circulating levels of EPA and DHA. Continued investigation regarding the impact of genetic variants related to EPA and DHA synthesis is warranted.

背景:二十二碳六烯酸(DHA)和二十碳五烯酸(EPA)是两种可由其前体α-亚麻酸(ALA)合成的欧米伽-3 脂肪酸。FADS 和 ELOVL 基因编码从 ALA 合成 EPA 和 DHA 所需的去饱和酶和延长酶;然而,FADS 和 ELOVL 基因中的单核苷酸多态性(SNPs)可能会改变从 ALA 合成的 EPA 和 DHA 的水平,尽管在这一领域尚未达成共识。本综述旨在研究人体血液中 EPA 和 DHA 的循环水平及其与 FADS 或 ELOVL 的关系:方法:使用 PubMed、Cochrane 和 Scopus 数据库查找研究文章。结果:初步确定了 353 篇论文:初步确定了 353 篇论文。在删除重复和不符合纳入标准的文章后,筛选出 98 篇全文论文。最后,本综述纳入了 40 项调查 FADS 和/或 ELOVL 多态性的研究。共有 47 个不同的 FADS 基因 SNPs 被报道。FADS1 rs174537、rs174547、rs174556 和 rs174561 是研究最多的 SNPs,小等位基因携带者的 EPA 和 DHA 水平较低。FADS 基因中的 SNPs 处于高度连锁不平衡状态。FADS 基因中的 SNP 与 EPA 和 DHA 水平相关。由于 ELOVL 多态性的研究数量太少,因此无法得出结论:结论:FADS 基因中的特定 SNPs(如 rs174537)与 EPA 和 DHA 的循环水平密切相关。有必要继续调查与 EPA 和 DHA 合成有关的基因变异的影响。
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引用次数: 0
Comprehensive overview of how to fade into succinate dehydrogenase dysregulation in cancer cells by naringenin-loaded chitosan nanoparticles. 全面概述如何通过柚皮苷载壳聚糖纳米粒子淡化癌细胞中的琥珀酸脱氢酶失调。
IF 3.5 3区 医学 Q2 GENETICS & HEREDITY Pub Date : 2024-05-27 DOI: 10.1186/s12263-024-00740-x
Eman M Ragab, Abeer A Khamis, Doaa M El Gamal, Tarek M Mohamed

Mitochondrial respiration complexes play a crucial function. As a result, dysfunction or change is intimately associated with many different diseases, among them cancer. The epigenetic, evolutionary, and metabolic effects of mitochondrial complex IΙ are the primary concerns of our review. Provides novel insight into the vital role of naringenin (NAR) as an intriguing flavonoid phytochemical in cancer treatment. NAR is a significant phytochemical that is a member of the flavanone group of polyphenols and is mostly present in citrus fruits, such as grapefruits, as well as other fruits and vegetables, like tomatoes and cherries, as well as foods produced from medicinal herbs. The evidence that is now available indicates that NAR, an herbal remedy, has significant pharmacological qualities and anti-cancer effects. Through a variety of mechanisms, including the induction of apoptosis, cell cycle arrest, restriction of angiogenesis, and modulation of several signaling pathways, NAR prevents the growth of cancer. However, the hydrophobic and crystalline structure of NAR is primarily responsible for its instability, limited oral bioavailability, and water solubility. Furthermore, there is no targeting and a high rate of breakdown in an acidic environment. These shortcomings are barriers to its efficient medical application. Improvement targeting NAR to mitochondrial complex ΙΙ by loading it on chitosan nanoparticles is a promising strategy.

线粒体呼吸复合体发挥着至关重要的功能。因此,功能障碍或变化与许多不同的疾病密切相关,其中包括癌症。线粒体复合物ⅠΙ的表观遗传、进化和新陈代谢效应是我们这篇综述的主要关注点。柚皮苷(NAR)作为一种有趣的类黄酮植物化学物质在癌症治疗中的重要作用提供了新的见解。柚皮苷是一种重要的植物化学物质,属于黄酮类多酚,主要存在于柑橘类水果(如葡萄柚)、其他水果和蔬菜(如番茄和樱桃)以及药材制成的食品中。现有证据表明,作为一种草药,NAR 具有显著的药理特性和抗癌作用。通过多种机制,包括诱导细胞凋亡、细胞周期停滞、限制血管生成和调节多种信号通路,NAR 可防止癌症生长。然而,NAR 的疏水性和晶体结构是造成其不稳定、口服生物利用度有限和水溶性的主要原因。此外,NAR 没有靶向性,在酸性环境中分解率高。这些缺点阻碍了其在医疗领域的有效应用。将 NAR 添加到壳聚糖纳米粒子上,使其靶向线粒体复合体 ΙΙ 是一种很有前景的策略。
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