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Function of steroid receptor coactivators (SRCs) in T cells and cancers: Implications for cancer immunotherapy 类固醇受体辅激活剂 (SRC) 在 T 细胞和癌症中的功能:癌症免疫疗法的意义
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-03-01 DOI: 10.1615/critrevimmunol.2024051613
Wencan Zhang, Xu Cao, Hongmin Wu, Xiancai Zhong, Yun Shi, Zuoming Sun
Steroid receptor coactivator (SRC) family members (SRC1, SRC2 and SRC3) are transcriptional co-regulators. SRCs orchestrate gene transcription by inducing transactivation of nuclear receptors and other transcription factors. Overexpression of SRCs is widely implicated in a range of cancers, especially hormone-related cancers. As coactivators, SRCs regulate multiple metabolic pathways involved in tumor growth, invasion, metastasis, and chemo-resistance. Emerging evidence in recent years suggest that SRCs also regulate maturation, differentiation, and cytotoxicity of T cells by controlling metabolic activities. In this review, we summarize the current understanding of the function of SRCs in T cells as well as cancer cells. Importantly, the controversies of targeting SRCs for cancer immunotherapy as well as possible reconciliation strategies are also discussed.
类固醇受体辅激活因子(SRC)家族成员(SRC1、SRC2 和 SRC3)是转录协同调控因子。SRC 通过诱导核受体和其他转录因子的转录激活来协调基因转录。SRCs的过度表达与一系列癌症,尤其是与激素相关的癌症有广泛联系。作为辅助激活因子,SRCs 可调节涉及肿瘤生长、侵袭、转移和化疗抗性的多种代谢途径。近年来新出现的证据表明,SRCs 还能通过控制代谢活动来调节 T 细胞的成熟、分化和细胞毒性。在这篇综述中,我们总结了目前对 SRCs 在 T 细胞和癌细胞中功能的理解。重要的是,我们还讨论了针对 SRCs 进行癌症免疫疗法的争议以及可能的调和策略。
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引用次数: 0
KIAA1429 induces the m6A modification of LINC01106 to enhance the malignancy of lung adenocarcinoma cell via JAK/STAT3 pathway KIAA1429 诱导 LINC01106 的 m6A 修饰,通过 JAK/STAT3 通路增强肺腺癌细胞的恶性程度
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024052728
Di Xu, Ziming Wang, Fajiu Li
Background: Sustained expression of LINC01106 in tumors is crucial for malignant phenotype of tumor cells; Nevertheless, LINC01106’s mechanisms and clinical effects in lung adenocarcinoma (LUAD) is confined. This report focus on reveal the effect of vir-like m6A methyltransferase associated (KIAA1429)-mediated N6-methyladenosine (m6A) modification to steady LINC01106 expression on LUAD progression.Methods: qRT-PCR was conducted to clarify the LINC01106 and KIAA1429 levels in LUAD tissues. LINC01106’s and KIAA1429’s functional roles were analyzed utilizing Transwell, EdU as well as CCK-8 assays. Xenograft was cconducted to verify the function of silencing LINC01106 in tumor growth. The regulatory role between LINC01106 was investigated using MeRIP, qRT-PCR as well as Actinomycin D assay. Key proteins of JAK/STAT3 (JAK2, STAT3) pathway were revealed via western blotting.Results: LINC01106 and KIAA1429 were high-expressed in LUAD, and LINC01106 were interconnected with high tumor grade, stage, and poor prognosis. Data revealed LINC01106 inhibition reduced LUAD cell proliferation, invasion as well as migration, and restrained LUAD cell tumorigenicity. Additionally, phosphorylated JAK2, STAT3 levels were reduced by LINC01106 silencing. LINC01106 was mediated by KIAA1429 to enhance its m6A modification and expression in LUAD cells. Moreover, KIAA1429 promotion abolished the malignant phenotypic suppression induced by LINC01106 lowexpression in LUAD cells.Conclusion: This research revealed LINC01106 m6A modification was enhanced by KIAA1429 to play the promotive role in LUAD development. The results may conduce to the comprehending of the act of KIAA1429-m6A-LINC0110
背景:LINC01106在肿瘤中的持续表达对肿瘤细胞的恶性表型至关重要;然而,LINC01106在肺腺癌(LUAD)中的作用机制和临床效果尚不明确。方法:采用 qRT-PCR 方法明确 LINC01106 和 KIAA1429 在 LUAD 组织中的水平。利用 Transwell、EdU 和 CCK-8 试验分析了 LINC01106 和 KIAA1429 的功能作用。通过异种移植验证了沉默 LINC01106 在肿瘤生长中的作用。利用 MeRIP、qRT-PCR 和放线菌素 D 试验研究了 LINC01106 之间的调控作用。结果发现,LINC01106与KAK2和STAT3之间存在密切的联系:结果:LINC01106和KIAA1429在LUAD中高表达,LINC01106与肿瘤分级、分期和预后不良有关。数据显示,抑制 LINC01106 可减少 LUAD 细胞的增殖、侵袭和迁移,抑制 LUAD 细胞的致瘤性。此外,LINC01106抑制还降低了磷酸化JAK2和STAT3的水平。LINC01106在KIAA1429的介导下增强了其在LUAD细胞中的m6A修饰和表达。此外,KIAA1429的促进还可消除LINC01106低表达对LUAD细胞恶性表型的抑制作用:结论:该研究发现,KIAA1429可增强LINC01106 m6A修饰,从而在LUAD的发展中发挥促进作用。这些结果可能有助于理解 KIAA1429-m6A-LINC0110 在 LUAD 细胞中的作用。
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引用次数: 0
Oral Cancer: Past, present and future of NK cell-based cancer immunotherapy 口腔癌基于 NK 细胞的癌症免疫疗法的过去、现在和未来
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024052389
Kawaljit Kaur, Anahid Jewett
Despite advancements in the field of cancer therapeutics the five-year survival rate remains low in oral cancer patients. There, the effective therapeutics are needed to control the disease. Also, several studies including ours have shown severely suppressed function and number of NK cells in oral cancer patients. In this review, we discuss the approach to inhibit the tumor growth and metastasis by direct killing or NK cell-mediated tumor differentiation. This review also provides the overview on supercharging NK cells using osteoclasts and probiotic bacteria, and their efficacy as cancer immunotherapeutic in humanized-BLT mice.
尽管癌症治疗领域取得了进步,但口腔癌患者的五年生存率仍然很低。因此,需要有效的治疗方法来控制病情。此外,包括我们在内的多项研究表明,口腔癌患者的 NK 细胞功能和数量受到严重抑制。在这篇综述中,我们讨论了通过直接杀伤或 NK 细胞介导的肿瘤分化来抑制肿瘤生长和转移的方法。本综述还概述了利用破骨细胞和益生菌增殖 NK 细胞的方法,以及它们在人源化 BLT 小鼠中作为癌症免疫疗法的疗效。
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引用次数: 0
Effect of p-estrogen receptor at serine on its function and breast growth 对雌激素受体丝氨酸对其功能和乳腺生长的影响
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024052499
Yuan Liang, Junhui Qin, Tiancheng Ma, Tong Yang, Zhenyu Ke, Ruian Wang
Background: Estrogen receptor (ER) signaling plays an important role in the development and functional differentiation of breast and participates in the process of breast cancer. Activated ER can affect various aspects of the cell’s behavior, including proliferation, via modulating the expression of many downstream target genes. Phosphorylation is one of the activation pathways of ER. However, the relationship between estrogen receptor phosphorylation sites and breast development and carcinogenesis is not clear.Methods: Using Crisper-Cas9 gene editing technology, we constructed ER S309A mutant mice. Using carmine staining of mammary gland of mice at different developmental stages, we examined breast development of ER S309Amice. Using HE staining of vaginal smears of mice at the same time for 5 consecutive days, we measured the vaginal epithelial keratinocytes.Results: We established ER S309A mutant mice and observed breast defects in ER S309A mice. In addition, we observed decreased reproductive ability, estrous cycle disorder in ER S309A mice. And number of vaginal epithelial keratinocytes in the estrous cycle of ER S309A mice was decreased.Conclusion: These results suggest that phosphorylation site of ER at serine 309 is important for ER function and breast development.
背景:雌激素受体(ER)信号在乳腺发育和功能分化过程中发挥着重要作用,并参与乳腺癌的发生过程。激活的雌激素受体可通过调节许多下游靶基因的表达,影响细胞行为的各个方面,包括增殖。磷酸化是ER的激活途径之一。然而,雌激素受体磷酸化位点与乳腺发育和癌变之间的关系尚不清楚:方法:利用Crisper-Cas9基因编辑技术,我们构建了ER S309A突变小鼠。方法:我们利用 Crisper-Cas9 基因编辑技术构建了ER S309A 突变小鼠,利用胭脂红染色法检测了不同发育阶段小鼠乳腺的发育情况。通过对连续5天同一时间的小鼠阴道涂片进行HE染色,我们测定了阴道上皮角质细胞:结果:我们建立了ER S309A突变小鼠,并观察到ER S309A小鼠的乳房缺陷。此外,我们还观察到ER S309A小鼠生殖能力下降、发情周期紊乱。ER S309A小鼠发情周期中阴道上皮角质细胞数量减少:这些结果表明,ER丝氨酸309的磷酸化位点对ER功能和乳腺发育非常重要。
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引用次数: 0
The value of systemic immune-inflammation index and T cell subsets in the severity and prognosis of sepsis 全身免疫炎症指数和 T 细胞亚群在败血症严重程度和预后中的价值
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024051413
Hao Zhou
Systemic immune-inflammation index (SII) and T cell subsets show involvement in mortality risk in septic patients, and we explored their predictive value in sepsis. Subjects were categorized into the Sepsis (SP)/Septic Shock (SSP)/Septic Shock (SPS) groups. T cell subsets [T-helper (Th)1, Th2, regulatory T cells (Treg), Th17]/platelets (PLT)/neutrophils (NEU)/lymphocytes (LYM)/C-reactive protein (CRP)/procalcitonin (PCT)/interleukin (IL)-4/IL-10/fibrinogen (FIB) were measured by an automatic blood biochemical analyzer/flow cytometry/Countess II FL automatic blood cell analyzer, with SII calculated. The correlations between SII/T cell subsets with Acute Physiology and Chronic Health Evaluation (APACH) II/Sequential Organ Failure Assessment (SOFA) scores and the predictive value of SII/Th1/Th2 for septic diagnosis/prognosis were analyzed using Spearman/ROC curve/Kaplan-Meier. The three groups varied in PLT/NEU/LYM/CRP/PCT/IL-4/IL-10/FIB levels and APACH II/SOFA scores. Compared with the SP group, the other two groups showed elevated APACH II/SOFA scores and SII/Th1/Th2/Th17/Treg levels. SII/Th1/Th2 levels significantly positively correlated with APACH II/SOFA scores. SII/Th1/Th2 levels had high predictive value for septic diagnosis/prognosis, with their combination exhibiting higher predictive value. Septic patients with high SII/Th1/Th2 levels exhibited lower survival rates. Altogether, SII, Th1, and Th2 had good predictive value for the diagnosis and prognosis of patients with varying severity of sepsis, with their high levels increasing mortality in septic patients.
全身免疫炎症指数(SII)和 T 细胞亚群与败血症患者的死亡风险有关,我们探讨了它们在败血症中的预测价值。受试者被分为败血症组(SP)/败血症休克组(SSP)/败血症休克组(SPS)。用全自动血液生化分析仪/流式细胞仪/Countess II FL全自动血细胞分析仪测量T细胞亚群[T辅助细胞(Th)1、Th2、调节性T细胞(Treg)、Th17]/血小板(PLT)/中性粒细胞(NEU)/淋巴细胞(LYM)/C反应蛋白(CRP)/降钙素原(PCT)/白细胞介素(IL)-4/IL-10/纤维蛋白原(FIB),并计算SII。使用 Spearman/ROC 曲线/卡普兰-梅耶尔分析了 SII/T 细胞亚群与急性生理学和慢性健康评估(APACH)II/序贯器官衰竭评估(SOFA)评分之间的相关性,以及 SII/Th1/Th2 对脓毒症诊断/预后的预测价值。三组患者的 PLT/NEU/LYM/CRP/PCT/IL-4/IL-10/FIB 水平和 APACH II/SOFA 评分各不相同。与 SP 组相比,其他两组的 APACH II/SOFA 评分和 SII/Th1/Th2/Th17/Treg 水平均有所升高。SII/Th1/Th2 水平与 APACH II/SOFA 评分呈显著正相关。SII/Th1/Th2水平对脓毒症的诊断/预后具有很高的预测价值,两者的组合具有更高的预测价值。SII/Th1/Th2水平高的脓毒症患者存活率较低。总之,SII、Th1 和 Th2 对不同严重程度脓毒症患者的诊断和预后具有很好的预测价值,它们的高水平会增加脓毒症患者的死亡率。
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引用次数: 0
Phillygenin alleviated arthritis through the inhibition of NLRP3 inflammasome and Ferroptosis by AMPK 菲利根因通过抑制 NLRP3 炎症小体和 AMPK 的铁凋亡缓解关节炎
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024051467
Jianghui Wang, Shufang Ni, Kai Zheng, Yan Zhao, peihong zhang, Hong Chang
Background: We investigated the potential arthritis-inducing effects of Phillygenin and its underlying mechanisms.Methods: RAW264.7 cells were stimulated with lipopolysaccharide to induce inflammation.Results: Phillygenin was found to reduce arthritis score, histopathological changes, paw edema, spleen index, and ALP levels in a dose-dependent manner in a model of arthritis. Additionally, Phillygenin was able to decrease levels of inflammation markers in serum samples of mice with arthritis and also inhibited inflammation markers in the cell supernatant of an in vitro model of arthritis. Phillygenin increased cell viability and JC-1 disaggregation, enhanced calcien-AM/CoCl2, reduced LDH activity levels and IL-1α levels, and inhibited Calcein/PI levels and iron concentration in an in vitro model. Phillygenin was also found to reduce ROS-induced oxidative stress and Ferroptosis, and suppress the NLRP3 inflammasome in both in vivo and in vitro models through AMPK. In the in vivo model, Phillygenin was observed to interact with AMPK protein.Conclusions: These findings suggest that Phillygenin may be a potential therapeutic target for preventing arthritis by inhibiting NLRP3 inflammasome and Ferroptosis through AMPK. This indicates that Phillygenin could have disease-modifying effects on arthritis.
背景方法:用脂多糖刺激RAW264.7细胞诱发炎症:方法:用脂多糖刺激 RAW264.7 细胞诱发炎症:结果:在关节炎模型中,Phillygenin能以剂量依赖的方式降低关节炎评分、组织病理学变化、爪水肿、脾脏指数和ALP水平。此外,菲利根因还能降低关节炎小鼠血清样本中的炎症标志物水平,并抑制体外关节炎模型细胞上清液中的炎症标志物。在体外模型中,Phillygenin 能提高细胞活力和 JC-1 分解,增强钙离子-AM/CoCl2,降低 LDH 活性水平和 IL-1α 水平,抑制 Calcein/PI 水平和铁浓度。研究还发现,在体内和体外模型中,Phillygenin 还能通过 AMPK 减少 ROS 诱导的氧化应激和铁氧化,并抑制 NLRP3 炎性体。在体内模型中,观察到菲利根因与 AMPK 蛋白相互作用:这些研究结果表明,Phillygenin 可通过 AMPK 抑制 NLRP3 炎性体和铁氧化酶,从而成为预防关节炎的潜在治疗靶点。结论:这些研究结果表明,Phillygenin 可通过 AMPK 抑制 NLRP3 炎症蛋白酶体和铁氧化酶,从而成为预防关节炎的潜在治疗靶点。
{"title":"Phillygenin alleviated arthritis through the inhibition of NLRP3 inflammasome and Ferroptosis by AMPK","authors":"Jianghui Wang, Shufang Ni, Kai Zheng, Yan Zhao, peihong zhang, Hong Chang","doi":"10.1615/critrevimmunol.2024051467","DOIUrl":"https://doi.org/10.1615/critrevimmunol.2024051467","url":null,"abstract":"Background: We investigated the potential arthritis-inducing effects of Phillygenin and its underlying mechanisms.\u0000Methods: RAW264.7 cells were stimulated with lipopolysaccharide to induce inflammation.\u0000Results: Phillygenin was found to reduce arthritis score, histopathological changes, paw edema, spleen index, and ALP levels in a dose-dependent manner in a model of arthritis. Additionally, Phillygenin was able to decrease levels of inflammation markers in serum samples of mice with arthritis and also inhibited inflammation markers in the cell supernatant of an in vitro model of arthritis. Phillygenin increased cell viability and JC-1 disaggregation, enhanced calcien-AM/CoCl2, reduced LDH activity levels and IL-1α levels, and inhibited Calcein/PI levels and iron concentration in an in vitro model. Phillygenin was also found to reduce ROS-induced oxidative stress and Ferroptosis, and suppress the NLRP3 inflammasome in both in vivo and in vitro models through AMPK. In the in vivo model, Phillygenin was observed to interact with AMPK protein.Conclusions: These findings suggest that Phillygenin may be a potential therapeutic target for preventing arthritis by inhibiting NLRP3 inflammasome and Ferroptosis through AMPK. This indicates that Phillygenin could have disease-modifying effects on arthritis.","PeriodicalId":55205,"journal":{"name":"Critical Reviews in Immunology","volume":"16 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139754833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Current and Future States of Natural Killer Cell-Based Immunotherapy in Hepatocellular Carcinoma 基于自然杀伤细胞的肝细胞癌免疫疗法的现状与未来
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024052486
Tu Nguyen, Po-Chun Chen, Janet Pham, Kawaljit Kaur, Steven Raman, Anahid Jewett, Jason Chiang
Natural killer (NK) cells are innate lymphoid cells that exhibit high levels of cytotoxicity against NK-specific targets, produce various cytokines, and interact with T cells, B cells, and dendritic cells to effectively serve as frontliners of the innate immune system. Moreover, NK cells constitue the second most frequent immune cell in the liver. These properties have drawn significant attention towards leveraging NK cells in treating liver cancer, especially hepatocellular carcinoma (HCC), which accounts for 75% of all liver cancer and is the fourth leading cause of cancer-related death worldwide. Notable anti-cancer functions of NK cells against HCC include activating antibody-dependent cell cytotoxicity (ADCC), facilitating Gasdermin E-mediated pyroptosis of HCC cells, and initiating an antitumor response via the cGAS-STING signaling pathway. In this review, we describe how these mechanisms work in the context of HCC. We will then discuss the existing preclinical and clinical studies that leverage NK cell activity to create single and combined immunotherapies.
自然杀伤(NK)细胞是一种先天性淋巴细胞,对 NK 特异性靶点具有高水平的细胞毒性,能产生各种细胞因子,并能与 T 细胞、B 细胞和树突状细胞相互作用,有效地充当先天性免疫系统的前线。此外,NK 细胞是肝脏中第二常见的免疫细胞。肝癌占所有肝癌的 75%,是全球癌症相关死亡的第四大原因。NK 细胞对 HCC 的显著抗癌功能包括激活抗体依赖性细胞毒性(ADCC)、促进 Gasdermin E 介导的 HCC 细胞热解,以及通过 cGAS-STING 信号通路启动抗肿瘤反应。在本综述中,我们将介绍这些机制如何在 HCC 中发挥作用。然后,我们将讨论现有的临床前和临床研究,这些研究利用 NK 细胞的活性创造了单一和联合免疫疗法。
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引用次数: 0
Efficacy and Nuances of Precision Molecular Engineering for Hodgkin's Disease to a Gene Therapeutic Approach 精确分子工程治疗霍奇金病到基因治疗方法的疗效和细微差别
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-02-01 DOI: 10.1615/critrevimmunol.2024052378
Muhammad Imran Qadir, Bilal Ahmed, Nadir Hussain
Gene therapy is a particularly useful treatment for nervous system genetic illnesses, including those induced especially by infectious organisms and antigens, and is being utilized to treat Hodgkin's disease. Due to the possible clonal relationship between both disorders, immunotherapy directed against CD20 positive cells may be a more effective treatment in patients with persistent HD and NHL.HL growth can be inhibited both in vitro and in vivo by AdsIL-13Ralpha2. High-dose treatment combined with stem cell transplantation has been effective in treating HIV-negative lymphoma that has progressed to high-risk or relapsed illness. For therapy, LMP2-specific CTL will be used. Furthermore, it is possible to view the cytotoxicity of genetically modified adenoviruses that express proteins such as p27Kip1, p21Waf1, and p16INK4A as a foundational element for (2;5)-derived ALCL genetic treatment for Hodgkin's disease
基因疗法是治疗神经系统遗传疾病(包括由传染性生物体和抗原诱发的疾病)的一种特别有效的方法,目前正被用于治疗霍奇金病。由于这两种疾病之间可能存在克隆关系,针对 CD20 阳性细胞的免疫疗法可能是治疗顽固性 HD 和 NHL 患者的更有效方法。AdsIL-13Ralpha2 可在体外和体内抑制 HL 的生长。大剂量治疗结合干细胞移植对治疗进展为高危或复发的HIV阴性淋巴瘤很有效。在治疗中,将使用 LMP2 特异性 CTL。此外,还可以将表达p27Kip1、p21Waf1和p16INK4A等蛋白的转基因腺病毒的细胞毒性视为(2;5)衍生ALCL基因治疗霍奇金病的基础要素
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引用次数: 0
Identification of a Novel Five-Gene Prognostic Model for Laryngeal Cancer Associated with Mitophagy Using Integrated Bioinformatics Analysis and Experimental Verification 利用综合生物信息学分析和实验验证确定与丝裂噬相关的喉癌五基因预测模型
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-01-01 DOI: 10.1615/critrevimmunol.2024051787
Dong Song, Lun Dong, Mei Wang, Xiaoping Gao
Laryngeal cancer (LC) is a prevailing tumor with a high mortality rate. The pivotal role of mitophagy in LC is acknowledged; however, a comprehensive analysis of the corresponding genes has not been conducted. In the present study, we proposed a prognostic model consisting of mitophagy-related genes in LC. Clinical information and transcriptome profiling of patients with LC and mitophagy-related genes were retrieved from open-source databases. Gene set variation analysis (GSVA) and Weighted Gene Co-expression Network Analysis (WGCNA) were used to identify core mitophagy-related genes and construct gene co-expression networks. Functional enrichment analysis was employed to analyze the enriched regulatory pathways of the mitophagy-related genes. Kaplan-Meier curves (KM), Cox, and LASSO regression were applied to explore their prognostic effects. Finally, quantitative real-time PCR (RT-qPCR) further verified the bioinformatics prediction. A total of 45 genes related to mitochondrial pathways was collected. GSVA analysis demonstrated that these genes in tumor samples mainly referred to the mitochondrial pathway. Among these genes, five mitophagy-related-gene signatures (CERCAM, CHPF, EPHX3, EXT2, and MED15) were further identified to construct the prognostic model. KM and Cox regression analyses indicated that this model had an accurate prognostic prediction for LC. RT-qPCR showed that CERCAM, CHPF, EXT2, and MED15 expression were upregulated, and EPHX3 level was decreased in LC cells. The present study established a five-mitophagy-related-gene model that can predict the prognosis of LC patients, thus laying the foundation for a better understanding and potential advancements in clinical treatments for LC.
喉癌(LC)是一种死亡率很高的常见肿瘤。有丝分裂在喉癌中的关键作用已得到公认,但尚未对相应基因进行全面分析。在本研究中,我们提出了一个由 LC 中有丝分裂相关基因组成的预后模型。我们从开源数据库中检索了 LC 患者的临床信息和转录组图谱,以及有丝分裂相关基因。利用基因组变异分析(GSVA)和加权基因共表达网络分析(WGCNA)确定有丝分裂相关的核心基因并构建基因共表达网络。功能富集分析用于分析有丝分裂相关基因的富集调控通路。应用Kaplan-Meier曲线(KM)、Cox和LASSO回归来探讨它们的预后效应。最后,实时定量 PCR(RT-qPCR)进一步验证了生物信息学预测。研究共收集了 45 个与线粒体通路相关的基因。GSVA分析表明,肿瘤样本中的这些基因主要涉及线粒体通路。在这些基因中,进一步确定了五个与线粒体吞噬相关的基因特征(CERCAM、CHPF、EPHX3、EXT2 和 MED15),以构建预后模型。KM和Cox回归分析表明,该模型能准确预测LC的预后。RT-qPCR显示,LC细胞中CERCAM、CHPF、EXT2和MED15表达上调,EPHX3水平下降。本研究建立了一个可预测LC患者预后的五种嗜丝虫相关基因模型,从而为更好地理解LC并推进其临床治疗奠定了基础。
{"title":"Identification of a Novel Five-Gene Prognostic Model for Laryngeal Cancer Associated with Mitophagy Using Integrated Bioinformatics Analysis and Experimental Verification","authors":"Dong Song, Lun Dong, Mei Wang, Xiaoping Gao","doi":"10.1615/critrevimmunol.2024051787","DOIUrl":"https://doi.org/10.1615/critrevimmunol.2024051787","url":null,"abstract":"Laryngeal cancer (LC) is a prevailing tumor with a high mortality rate. The pivotal role of mitophagy in LC is acknowledged; however, a comprehensive analysis of the corresponding genes has not been conducted. In the present study, we proposed a prognostic model consisting of mitophagy-related genes in LC. Clinical information and transcriptome profiling of patients with LC and mitophagy-related genes were retrieved from open-source databases. Gene set variation analysis (GSVA) and Weighted Gene Co-expression Network Analysis (WGCNA) were used to identify core mitophagy-related genes and construct gene co-expression networks. Functional enrichment analysis was employed to analyze the enriched regulatory pathways of the mitophagy-related genes. Kaplan-Meier curves (KM), Cox, and LASSO regression were applied to explore their prognostic effects. Finally, quantitative real-time PCR (RT-qPCR) further verified the bioinformatics prediction. A total of 45 genes related to mitochondrial pathways was collected. GSVA analysis demonstrated that these genes in tumor samples mainly referred to the mitochondrial pathway. Among these genes, five mitophagy-related-gene signatures (<i>CERCAM, CHPF, EPHX3, EXT2</i>, and <i>MED15</i>) were further identified to construct the prognostic model. KM and Cox regression analyses indicated that this model had an accurate prognostic prediction for LC. RT-qPCR showed that <i>CERCAM, CHPF, EXT2</i>, and <i>MED15</i> expression were upregulated, and <i>EPHX3</i> level was decreased in LC cells. The present study established a five-mitophagy-related-gene model that can predict the prognosis of LC patients, thus laying the foundation for a better understanding and potential advancements in clinical treatments for LC.","PeriodicalId":55205,"journal":{"name":"Critical Reviews in Immunology","volume":"296 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140805096","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Study of Therapeutic Mechanisms of Bupi Yichang Formula against Colon Cancer Based on Network Pharmacology, Machine Learning, and Experimental Verification 基于网络药理学、机器学习和实验验证的布比益昌方对结肠癌的治疗机制研究
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2024-01-01 DOI: 10.1615/critrevimmunol.2023051509
Juan Du
Bupi Yichang formula (BPYCF) has shown the anti-cancer potential; however, its effects on colon cancer and the mechanisms remain unknown. This study intended to explore the effects of BPYC on colon cancer and its underlying mechanisms. BPYCF-related and colon cancer-related targets were acquired from public databases, followed by differentially expressed genes (DEG) identification. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed using clusterProfiler. A protein-protein interaction (PPI) network was constructed using STRING database. CytoHubba and MCODE to screen the hub targets. A diagnostic model was built using random forest algorithm. Molecular docking was conducted using PyMOL and AutoDock. High-performance liquid chromatograph-mass spectrometry (HPLC-MS) analysis and in vitro validation were performed. Forty-six overlapping targets of BPYCF-related, colon cancer-related targets, and DEGs were obtained. GO and KEGG analyses showed that the targets were mainly enriched in response to lipopolysaccharide, neuronal cell body, protein serine/threonine/tyrosine, as well as C-type lectin receptor, NOD-like receptor, and TNF signaling pathways. Five targets were identified as the pivotal targets, among which, NOS3, CASP8, RIPK3, and TNFRSF10B were stably docked with the core active component, naringenin. Naringenin was also identified from the BPYCF sample through HPLC-MS analysis. In vitro experiments showed that BPYCF inhibited cell viability, reduced NOS3 expression, and elevated CASP8, RIPK3, and TNFRSF10B expression in colon cancer cells. BPYCF might treat colon cancer mainly by regulating NOS3, CASP8, RIPK3, and TN-FRSF10B. This study first revealed the therapeutic effects and mechanisms of BPYCF against colon cancer, paving the path for the development of targeted therapeutic strategies for this cancer in the clinic.
布比益昌方(BPYCF)具有抗癌潜力,但其对结肠癌的影响及其机制仍不清楚。本研究旨在探讨布比益肝方对结肠癌的作用及其机制。研究人员从公共数据库中获取了 BPYCF 相关靶点和结肠癌相关靶点,并对其进行了差异表达基因(DEG)鉴定。使用clusterProfiler对基因本体(GO)和京都基因组百科全书(KEGG)进行了分析。使用 STRING 数据库构建了蛋白质-蛋白质相互作用(PPI)网络。利用 CytoHubba 和 MCODE 筛选枢纽靶标。使用随机森林算法建立了诊断模型。使用 PyMOL 和 AutoDock 进行分子对接。进行了高效液相色谱-质谱(HPLC-MS)分析和体外验证。结果发现了 46 个与 BPYCF 相关的重叠靶点、与结肠癌相关的靶点和 DEGs。GO和KEGG分析表明,这些靶点主要富集在脂多糖、神经元细胞体、蛋白丝氨酸/苏氨酸/酪氨酸以及C型凝集素受体、NOD样受体和TNF信号通路中。其中,NOS3、CASP8、RIPK3 和 TNFRSF10B 与核心活性成分柚皮苷稳定对接。通过 HPLC-MS 分析,还从 BPYCF 样品中鉴定出了柚皮苷。体外实验表明,BPYCF 能抑制结肠癌细胞的活力,降低 NOS3 的表达,提高 CASP8、RIPK3 和 TNFRSF10B 的表达。BPYCF可能主要通过调节NOS3、CASP8、RIPK3和TN-FRSF10B来治疗结肠癌。该研究首次揭示了BPYCF对结肠癌的治疗作用和机制,为临床开发结肠癌靶向治疗策略铺平了道路。
{"title":"Study of Therapeutic Mechanisms of Bupi Yichang Formula against Colon Cancer Based on Network Pharmacology, Machine Learning, and Experimental Verification","authors":"Juan Du","doi":"10.1615/critrevimmunol.2023051509","DOIUrl":"https://doi.org/10.1615/critrevimmunol.2023051509","url":null,"abstract":"Bupi Yichang formula (BPYCF) has shown the anti-cancer potential; however, its effects on colon cancer and the mechanisms remain unknown. This study intended to explore the effects of BPYC on colon cancer and its underlying mechanisms. BPYCF-related and colon cancer-related targets were acquired from public databases, followed by differentially expressed genes (DEG) identification. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed using clusterProfiler. A protein-protein interaction (PPI) network was constructed using STRING database. CytoHubba and MCODE to screen the hub targets. A diagnostic model was built using random forest algorithm. Molecular docking was conducted using PyMOL and AutoDock. High-performance liquid chromatograph-mass spectrometry (HPLC-MS) analysis and <i>in vitro</i> validation were performed. Forty-six overlapping targets of BPYCF-related, colon cancer-related targets, and DEGs were obtained. GO and KEGG analyses showed that the targets were mainly enriched in response to lipopolysaccharide, neuronal cell body, protein serine/threonine/tyrosine, as well as C-type lectin receptor, NOD-like receptor, and TNF signaling pathways. Five targets were identified as the pivotal targets, among which, NOS3, CASP8, RIPK3, and TNFRSF10B were stably docked with the core active component, naringenin. Naringenin was also identified from the BPYCF sample through HPLC-MS analysis. <i>In vitro</i> experiments showed that BPYCF inhibited cell viability, reduced NOS3 expression, and elevated CASP8, RIPK3, and TNFRSF10B expression in colon cancer cells. BPYCF might treat colon cancer mainly by regulating NOS3, CASP8, RIPK3, and TN-FRSF10B. This study first revealed the therapeutic effects and mechanisms of BPYCF against colon cancer, paving the path for the development of targeted therapeutic strategies for this cancer in the clinic.","PeriodicalId":55205,"journal":{"name":"Critical Reviews in Immunology","volume":"1 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139421559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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