Flood pulses in floodplain rivers affect fish food webs, with seasonal hydrological changes altering carbon and nitrogen sources and, consequently, species’ trophic attributes. In this study, we assessed the effect of the flood pulse on the trophic attributes and isotopic signatures (δ13C and δ15N) and assimilated resources of the cichlid Geophagus argyrostictus in the Xingu River (Amazon basin), a site impacted by dams. These features of G. argyrostictus were investigated by combining stomach content inspection and isotopic analysis over a hydrological cycle. Sampling was conducted monthly from 2020 to 2021, and digestive tract, muscle tissue and food resource samples were analyzed. Indices of diet (alimentary index and feeding intensity) and variation in isotopic signatures were evaluated and tested using permutational multivariate ANOVA and a generalized linear model. The contributions of food resources (Bayesian mixing models), trophic position and niche width were also analyzed. The main items in the stomach analysis were sediment (87%) and terrestrial plants (8.4%), with the composition varying mainly between high and low water periods; there was no variation in feeding intensity between these periods. The carbon isotopic signature varied according to flow rate, with aquatic molluscs and sediment being the most important assimilated resources across the periods. G. argyrostictus maintained a stable trophic position. In conclusion, hydrological variation influenced the composition of G. argyrostictus’ diet, with autochthonous resources being the main items structuring it. Our findings may reflect strategies used by this species in response to artificially regulated flow variation, and show that trophic studies are crucial for understanding ecological patterns in environments such as the Xingu River impacted by this type of change.