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Comparing eDNA and eRNA Sampling Methodologies From Pond Environments
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-18 DOI: 10.1002/aqc.70083
Katarzyna Janik-Superson, Dawid Krawczyk, Monika Baranowska, Klaudyna Królikowska, Michał Seweryn, Jakub Lach, Grzegorz Tończyk, Dominik Strapagiel, Karolina Bącela-Spychalska, Annette Taugbøl

Molecular traces are increasingly being applied to assess the presence of species and communities. Studies on environmental DNA (eDNA) have, to a large extent, become common practice in species detection, but less studies have compared biodiversity estimations with the more temporary environmental RNA (eRNA). This study compares metabarcoding results from pond water obtained from both molecule types by sequencing the V4 region in the 18S rRNA marker. Water was collected from two depths, 20 and 80 cm, and filtered sequentially through two filter porosities, 0.45 and 0.22 μm. Each filter was cut in half before fixation in either 96% ETOH or RNAlater. The results showed no differences between the fixatives for either molecule. Overall, biodiversity estimates from eDNA significantly overperformed eRNA, likely due to higher concentrations of eDNA from terrestrial sources. Comparisons of the two depths showed variation for eDNA only, with increasing levels of biodiversity found at the upper water layer. Both filter pore sizes captured distinctive compositions of taxa, where about 30% of the diversity was uniquely identified from the second, finer filter. Taken together, these findings imply that the choice of molecular marker, depth and filter pore size affects the obtained biodiversity estimations in a pond.

{"title":"Comparing eDNA and eRNA Sampling Methodologies From Pond Environments","authors":"Katarzyna Janik-Superson,&nbsp;Dawid Krawczyk,&nbsp;Monika Baranowska,&nbsp;Klaudyna Królikowska,&nbsp;Michał Seweryn,&nbsp;Jakub Lach,&nbsp;Grzegorz Tończyk,&nbsp;Dominik Strapagiel,&nbsp;Karolina Bącela-Spychalska,&nbsp;Annette Taugbøl","doi":"10.1002/aqc.70083","DOIUrl":"https://doi.org/10.1002/aqc.70083","url":null,"abstract":"<p>Molecular traces are increasingly being applied to assess the presence of species and communities. Studies on environmental DNA (eDNA) have, to a large extent, become common practice in species detection, but less studies have compared biodiversity estimations with the more temporary environmental RNA (eRNA). This study compares metabarcoding results from pond water obtained from both molecule types by sequencing the V4 region in the 18S rRNA marker. Water was collected from two depths, 20 and 80 cm, and filtered sequentially through two filter porosities, 0.45 and 0.22 μm. Each filter was cut in half before fixation in either 96% ETOH or RNAlater. The results showed no differences between the fixatives for either molecule. Overall, biodiversity estimates from eDNA significantly overperformed eRNA, likely due to higher concentrations of eDNA from terrestrial sources. Comparisons of the two depths showed variation for eDNA only, with increasing levels of biodiversity found at the upper water layer. Both filter pore sizes captured distinctive compositions of taxa, where about 30% of the diversity was uniquely identified from the second, finer filter. Taken together, these findings imply that the choice of molecular marker, depth and filter pore size affects the obtained biodiversity estimations in a pond.</p>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aqc.70083","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143431586","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatial Variability in Juvenile Sea Trout Data Collection and Assessment Methods Across Europe: Limitations and Opportunities for Standardising Analyses
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-17 DOI: 10.1002/aqc.70040
Carlos M. Alexandre, Madeleine Berry, Katarina Magnusson, Sara Silva, Pauliina Louhi, Alan Walker, Johan Höjesjö, Iain A. Malcolm

Brown trout (Salmo trutta L.) is a widely distributed fish species native to Europe, with high phenotypic plasticity, including resident and anadromous (sea trout) forms. Many populations are in decline, especially the anadromous ecotype towards the southern edge of their range. Evidence-based management is dependent on reliable assessment methods to characterise underperforming populations and identify mitigation actions. Assessment methods based on juvenile data are useful for trout given the species' plasticity. These typically involve comparisons between observed and expected juvenile densities, which vary geographically and with habitat quality. These estimates are mostly obtained through wading electrofishing and field-based habitat surveys. Although some national and regional trout assessment methods have been developed, efforts to develop range-wide evaluations have been constrained by a lack of common protocols. This paper summarises the national methods used to characterise juvenile trout and associated habitat based on information compiled by national representatives of the ICES WGTRUTTA. It then considers opportunities for harmonising data with the aim of developing a range-wide assessment. Survey methods varied substantially within and between countries but showed no clear spatial patterns of coherence. Development of a single set of survey and data collection methods appears highly unlikely. A more pragmatic approach could involve harmonising existing data to make them broadly comparable. This could involve selective use of fish survey data, integration of range-wide macro-scale spatial and habitat data obtained from spatial datasets and use of appropriate modelling frameworks. We also emphasise the critical importance of population data from index rivers to validate and scale juvenile assessments and to compare sampling methods.

{"title":"Spatial Variability in Juvenile Sea Trout Data Collection and Assessment Methods Across Europe: Limitations and Opportunities for Standardising Analyses","authors":"Carlos M. Alexandre,&nbsp;Madeleine Berry,&nbsp;Katarina Magnusson,&nbsp;Sara Silva,&nbsp;Pauliina Louhi,&nbsp;Alan Walker,&nbsp;Johan Höjesjö,&nbsp;Iain A. Malcolm","doi":"10.1002/aqc.70040","DOIUrl":"https://doi.org/10.1002/aqc.70040","url":null,"abstract":"<div>\u0000 \u0000 <p>Brown trout (<i>Salmo trutta</i> L.) is a widely distributed fish species native to Europe, with high phenotypic plasticity, including resident and anadromous (sea trout) forms. Many populations are in decline, especially the anadromous ecotype towards the southern edge of their range. Evidence-based management is dependent on reliable assessment methods to characterise underperforming populations and identify mitigation actions. Assessment methods based on juvenile data are useful for trout given the species' plasticity. These typically involve comparisons between observed and expected juvenile densities, which vary geographically and with habitat quality. These estimates are mostly obtained through wading electrofishing and field-based habitat surveys. Although some national and regional trout assessment methods have been developed, efforts to develop range-wide evaluations have been constrained by a lack of common protocols. This paper summarises the national methods used to characterise juvenile trout and associated habitat based on information compiled by national representatives of the ICES WGTRUTTA. It then considers opportunities for harmonising data with the aim of developing a range-wide assessment. Survey methods varied substantially within and between countries but showed no clear spatial patterns of coherence. Development of a single set of survey and data collection methods appears highly unlikely. A more pragmatic approach could involve harmonising existing data to make them broadly comparable. This could involve selective use of fish survey data, integration of range-wide macro-scale spatial and habitat data obtained from spatial datasets and use of appropriate modelling frameworks. We also emphasise the critical importance of population data from index rivers to validate and scale juvenile assessments and to compare sampling methods.</p>\u0000 </div>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143431617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogeography of the Pacific Angel Shark (Squatina californica) in the Eastern Pacific
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-17 DOI: 10.1002/aqc.70087
Massiel Alfonso-González, Felipe Galván-Magaña, Giovanna Sotil, Omar Domínguez Domínguez, Eduardo Espinoza Herrera, Píndaro Díaz-Jaimes

Squatina californica is a near-threatened angel shark distributed in coastal areas of eastern Pacific. Despite its wide distribution and the conservation threats, basic knowledge of the species populations, evolutionary history and genetic diversity is scarce. In this study, we use two mitochondrial genetic markers (Control Region of mtDNA and Cytochrome C Oxidase subunit I) to explore the species' phylogeography. We included samples from locations in the Southern Californian Pacific (SCP), the Gulf of California (GC) and the Southeast Pacific (SEP). We identified three populations of the Pacific Angel Shark, corresponding to the regions SCP, GC and SEP. These results show an antitropical distribution for the species, which may be a consequence of the climatic instability of Central America during the Pliocene. Additionally, we infer that the divergence of the SCP populations from those of the GC coincided closely with the formation of the Baja California Peninsula, without current migration through the southern end of the peninsula. Finally, we detected a signal of population expansion and substructure within the GC, probably promoted by environmental heterogeneity in this area. Our results indicate that the three populations identified herein should be considered separate management units, because they exhibited independent evolutionary histories that may influence their levels of resilience to fishing pressure.

{"title":"Phylogeography of the Pacific Angel Shark (Squatina californica) in the Eastern Pacific","authors":"Massiel Alfonso-González,&nbsp;Felipe Galván-Magaña,&nbsp;Giovanna Sotil,&nbsp;Omar Domínguez Domínguez,&nbsp;Eduardo Espinoza Herrera,&nbsp;Píndaro Díaz-Jaimes","doi":"10.1002/aqc.70087","DOIUrl":"https://doi.org/10.1002/aqc.70087","url":null,"abstract":"<div>\u0000 \u0000 <p><i>Squatina californica</i> is a near-threatened angel shark distributed in coastal areas of eastern Pacific. Despite its wide distribution and the conservation threats, basic knowledge of the species populations, evolutionary history and genetic diversity is scarce. In this study, we use two mitochondrial genetic markers (Control Region of mtDNA and Cytochrome C Oxidase subunit I) to explore the species' phylogeography. We included samples from locations in the Southern Californian Pacific (SCP), the Gulf of California (GC) and the Southeast Pacific (SEP). We identified three populations of the Pacific Angel Shark, corresponding to the regions SCP, GC and SEP. These results show an antitropical distribution for the species, which may be a consequence of the climatic instability of Central America during the Pliocene. Additionally, we infer that the divergence of the SCP populations from those of the GC coincided closely with the formation of the Baja California Peninsula, without current migration through the southern end of the peninsula. Finally, we detected a signal of population expansion and substructure within the GC, probably promoted by environmental heterogeneity in this area. Our results indicate that the three populations identified herein should be considered separate management units, because they exhibited independent evolutionary histories that may influence their levels of resilience to fishing pressure.</p>\u0000 </div>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143431549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Internesting Period and Clutch Frequency of the Endangered Loggerhead Turtle Population of Cabo Verde
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-17 DOI: 10.1002/aqc.70075
Ana Raposo, Rui Rebelo, Adolfo Marco

Knowledge about the reproductive success of sea turtles is essential for their conservation. These nest preferentially on the beaches where they were born and may nest more than once during each nesting season, with a variable number of nests per female. Several factors can lead to variations in reproductive output. This study estimated the clutch frequency and internesting period of the threatened subpopulation of the loggerhead turtle (Caretta caretta) from the island of Boa Vista, Cabo Verde. This archipelago hosts the second-largest (or perhaps largest) population of C. caretta globally, with Boa Vista being the most important nesting island. Female distinctions were made on their previous experience (neophytes and remigrants) and their body size. Data were collected between 2013 and 2020 through marking and recapture, on João Barrosa beach, in the Reserva Natural das Tartarugas. In years with more females nesting on beaches, a smaller percentage of nests are studied because of the difficulty in reporting them all. As such, only the first 25% of the nests were analysed. Minimum clutch frequency ranged between 3.8 and 4.1. Remigrants had a larger body size and higher clutch frequency than neophytes, without differences in the internesting period. This study also showed differences between neophyte and remigrant females, specifically only in their measured clutch frequency. However, neophytes likely switch between nesting grounds more often, evading monitoring, and highlighting their potential to move to other islands or to breed out of the main season. These findings enhance our understanding of reproductive strategies, enabling the application of distinct conservation strategies tailored to each group. Satellite telemetry could address study limitations regarding clutch frequency values and provide a better understanding of nesting patterns and the impact of environmental factors on reproduction. This could improve conservation strategies by identifying critical habitats and guiding targeted protective measures, supporting population recovery.

{"title":"Internesting Period and Clutch Frequency of the Endangered Loggerhead Turtle Population of Cabo Verde","authors":"Ana Raposo,&nbsp;Rui Rebelo,&nbsp;Adolfo Marco","doi":"10.1002/aqc.70075","DOIUrl":"https://doi.org/10.1002/aqc.70075","url":null,"abstract":"<div>\u0000 \u0000 <p>Knowledge about the reproductive success of sea turtles is essential for their conservation. These nest preferentially on the beaches where they were born and may nest more than once during each nesting season, with a variable number of nests per female. Several factors can lead to variations in reproductive output. This study estimated the clutch frequency and internesting period of the threatened subpopulation of the loggerhead turtle (<i>Caretta caretta</i>) from the island of Boa Vista, Cabo Verde. This archipelago hosts the second-largest (or perhaps largest) population of <i>C. caretta</i> globally, with Boa Vista being the most important nesting island. Female distinctions were made on their previous experience (neophytes and remigrants) and their body size. Data were collected between 2013 and 2020 through marking and recapture, on João Barrosa beach, in the Reserva Natural das Tartarugas. In years with more females nesting on beaches, a smaller percentage of nests are studied because of the difficulty in reporting them all. As such, only the first 25% of the nests were analysed. Minimum clutch frequency ranged between 3.8 and 4.1. Remigrants had a larger body size and higher clutch frequency than neophytes, without differences in the internesting period. This study also showed differences between neophyte and remigrant females, specifically only in their measured clutch frequency. However, neophytes likely switch between nesting grounds more often, evading monitoring, and highlighting their potential to move to other islands or to breed out of the main season. These findings enhance our understanding of reproductive strategies, enabling the application of distinct conservation strategies tailored to each group. Satellite telemetry could address study limitations regarding clutch frequency values and provide a better understanding of nesting patterns and the impact of environmental factors on reproduction. This could improve conservation strategies by identifying critical habitats and guiding targeted protective measures, supporting population recovery.</p>\u0000 </div>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143431569","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Social Clustering and Conservation Implications for Critically Endangered Taiwanese Humpback Dolphins (Sousa chinensis taiwanensis)
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-15 DOI: 10.1002/aqc.70089
Mei-Ling Bai, Chieh Ning Huang, Yu-Yi Lien

In social species, social relationships of an individual play a crucial role in its fitness, and the social structure of a population can be vital to its viability. This study investigated the social network of the critically endangered Taiwanese humpback dolphin (Sousa chinensis taiwanensis) population during the periods 2017–2020 and 2021–2023. We observed a reduction in the strength and reach of the social network compared with a decade ago. The population could be divided into three clusters, each characterized by distinct age compositions and network metrics, with limited intercluster associations and minimal overlap in core areas. The decline and ageing of the northern cluster suggested the need for further research into its habitat quality. In the central cluster, which previously had high calf sighting rates, low intracluster association and a limited number of young individuals raised concerns about reproductive constraints. The southern cluster, although most socially vigorous, partly occupied areas outside the protected zone. Our findings emphasized the need for cluster-specific management strategies to enhance conservation efforts.

{"title":"Social Clustering and Conservation Implications for Critically Endangered Taiwanese Humpback Dolphins (Sousa chinensis taiwanensis)","authors":"Mei-Ling Bai,&nbsp;Chieh Ning Huang,&nbsp;Yu-Yi Lien","doi":"10.1002/aqc.70089","DOIUrl":"https://doi.org/10.1002/aqc.70089","url":null,"abstract":"<div>\u0000 \u0000 <p>In social species, social relationships of an individual play a crucial role in its fitness, and the social structure of a population can be vital to its viability. This study investigated the social network of the critically endangered Taiwanese humpback dolphin (<i>Sousa chinensis taiwanensis</i>) population during the periods 2017–2020 and 2021–2023. We observed a reduction in the strength and reach of the social network compared with a decade ago. The population could be divided into three clusters, each characterized by distinct age compositions and network metrics, with limited intercluster associations and minimal overlap in core areas. The decline and ageing of the northern cluster suggested the need for further research into its habitat quality. In the central cluster, which previously had high calf sighting rates, low intracluster association and a limited number of young individuals raised concerns about reproductive constraints. The southern cluster, although most socially vigorous, partly occupied areas outside the protected zone. Our findings emphasized the need for cluster-specific management strategies to enhance conservation efforts.</p>\u0000 </div>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143423516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of Habitat Structure and Environmental Factors on Fish Fauna in Temperate River Estuaries
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-15 DOI: 10.1002/aqc.70086
Rei Itsukushima, Yuichi Kano

Riverine estuaries provide several ecosystem services to humankind. Notably, river estuaries are important habitats for both saltwater and freshwater organisms. However, the environment is experiencing degradation due to both direct and indirect anthropogenic impacts across various spatial scales (e.g., dredging, river channelization, land use change and dam construction). This study aims to reveal the relationship between the river estuarine fish fauna and the environmental factors including anthropogenic impacts as the basic knowledge necessary for the conservation and restoration. The Bōsō Peninsula (Japan) was selected as the study area. We identified the environmental factors that affected the fish species diversity and determined the factors that affected the habitat structure in the river, while focusing on anthropogenic impacts and topographical conditions. The fish species that occur in river estuaries are strongly influenced by habitat-scale factors, such as flow velocity and water depth, along with watershed-scale factors (such as wave exposure and direct fetch). In addition, the width–depth ratio, which indicates the degree of river channelization, was an important factor that controlled the habitat structure of the fish in the estuary. The results suggest the need for developing restoration plans based on the predictions of the potential physical environment, while considering the predictions for the occurrence of different fish species in the target area. Although this study is limited to the Bōsō Peninsula, our study can be used as a framework for improving future conservation and restoration plans for river estuaries in not just Japan but also other countries.

{"title":"Effects of Habitat Structure and Environmental Factors on Fish Fauna in Temperate River Estuaries","authors":"Rei Itsukushima,&nbsp;Yuichi Kano","doi":"10.1002/aqc.70086","DOIUrl":"https://doi.org/10.1002/aqc.70086","url":null,"abstract":"<p>Riverine estuaries provide several ecosystem services to humankind. Notably, river estuaries are important habitats for both saltwater and freshwater organisms. However, the environment is experiencing degradation due to both direct and indirect anthropogenic impacts across various spatial scales (e.g., dredging, river channelization, land use change and dam construction). This study aims to reveal the relationship between the river estuarine fish fauna and the environmental factors including anthropogenic impacts as the basic knowledge necessary for the conservation and restoration. The Bōsō Peninsula (Japan) was selected as the study area. We identified the environmental factors that affected the fish species diversity and determined the factors that affected the habitat structure in the river, while focusing on anthropogenic impacts and topographical conditions. The fish species that occur in river estuaries are strongly influenced by habitat-scale factors, such as flow velocity and water depth, along with watershed-scale factors (such as wave exposure and direct fetch). In addition, the width–depth ratio, which indicates the degree of river channelization, was an important factor that controlled the habitat structure of the fish in the estuary. The results suggest the need for developing restoration plans based on the predictions of the potential physical environment, while considering the predictions for the occurrence of different fish species in the target area. Although this study is limited to the Bōsō Peninsula, our study can be used as a framework for improving future conservation and restoration plans for river estuaries in not just Japan but also other countries.</p>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aqc.70086","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143423519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Stable Isotope Analysis of Oysters as a Tool for Environmental Monitoring in a Marine Extractive Reserve 将牡蛎的稳定同位素分析作为海洋开采保护区环境监测的工具
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-15 DOI: 10.1002/aqc.70088
Pedro Sant' Anna Cortez, Nícollas Menezes Ferreira, Narcilo Cardoso, João Paulo de Sá Felizardo, Marcelo Costa Muniz, Julio Cesar Monteiro, Cássia de Oliveira Farias, Giselle Pinto de Faria Lopes, Roberto Meigikos dos Anjos, Ricardo Coutinho, Louisi Souza de Oliveira

The stable isotopes δ13C and δ15N are widely recognized and utilized as biomarkers for analysing trophic links, paleoenvironmental reconstruction, biogeography and nutrient sources. However, it is essential to further develop their applications, as their use in marine environmental monitoring is not as prominent. 13C and 15N have distinct signatures in organic compounds, which can be utilized to identify potential carbon and nitrogen sources. Marine bivalves are often employed in environmental studies as efficient bioindicators because sessile filter feeders tend to bioaccumulate pollutants. The present study analysed δ13C and δ15N in seston and oysters inhabiting two areas with different environmental conditions in a marine extractive reserve. The isotopic values were compared for two trophic levels and three oyster tissues, resulting in a broad view of local dynamics. Seston samples from Forno Beach (FB) exhibited depleted δ13C values, possibly reflecting a terrigenous carbon contribution in this area. Considering oyster tissues, δ13C and δ15N values in the hepatopancreas were similar to seston, possibly due to oysters' role as filter feeders, supporting the use of digestive tissues for assessing short-term changes of environmental conditions. Moreover, isotope values for oyster gills and muscles suggest long-term homogeneous conditions for Anjos Beach (AB) and FB, with a predominance of marine carbon and nitrogen sources. Our results underline the relevance of analysing bivalve tissues separately because they display different turnover rates and depict variable time frames of environmental conditions. This article provides valuable information on the variables that must be considered when applying stable isotope analysis in coastal environmental monitoring, highlights knowledge gaps and recommends best practices for future work in this area.

{"title":"Stable Isotope Analysis of Oysters as a Tool for Environmental Monitoring in a Marine Extractive Reserve","authors":"Pedro Sant' Anna Cortez,&nbsp;Nícollas Menezes Ferreira,&nbsp;Narcilo Cardoso,&nbsp;João Paulo de Sá Felizardo,&nbsp;Marcelo Costa Muniz,&nbsp;Julio Cesar Monteiro,&nbsp;Cássia de Oliveira Farias,&nbsp;Giselle Pinto de Faria Lopes,&nbsp;Roberto Meigikos dos Anjos,&nbsp;Ricardo Coutinho,&nbsp;Louisi Souza de Oliveira","doi":"10.1002/aqc.70088","DOIUrl":"https://doi.org/10.1002/aqc.70088","url":null,"abstract":"<div>\u0000 \u0000 <p>The stable isotopes δ<sup>13</sup>C and δ<sup>15</sup>N are widely recognized and utilized as biomarkers for analysing trophic links, paleoenvironmental reconstruction, biogeography and nutrient sources. However, it is essential to further develop their applications, as their use in marine environmental monitoring is not as prominent. <sup>13</sup>C and <sup>15</sup>N have distinct signatures in organic compounds, which can be utilized to identify potential carbon and nitrogen sources. Marine bivalves are often employed in environmental studies as efficient bioindicators because sessile filter feeders tend to bioaccumulate pollutants. The present study analysed δ<sup>13</sup>C and δ<sup>15</sup>N in seston and oysters inhabiting two areas with different environmental conditions in a marine extractive reserve. The isotopic values were compared for two trophic levels and three oyster tissues, resulting in a broad view of local dynamics. Seston samples from Forno Beach (FB) exhibited depleted δ<sup>13</sup>C values, possibly reflecting a terrigenous carbon contribution in this area. Considering oyster tissues, δ<sup>13</sup>C and δ<sup>15</sup>N values in the hepatopancreas were similar to seston, possibly due to oysters' role as filter feeders, supporting the use of digestive tissues for assessing short-term changes of environmental conditions. Moreover, isotope values for oyster gills and muscles suggest long-term homogeneous conditions for Anjos Beach (AB) and FB, with a predominance of marine carbon and nitrogen sources. Our results underline the relevance of analysing bivalve tissues separately because they display different turnover rates and depict variable time frames of environmental conditions. This article provides valuable information on the variables that must be considered when applying stable isotope analysis in coastal environmental monitoring, highlights knowledge gaps and recommends best practices for future work in this area.</p>\u0000 </div>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143423520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Former Pelagic Longline Fishery of a Large-Scale Marine Protected Area
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-14 DOI: 10.1002/aqc.70076
Chris Kerry, Kristian Metcalfe, Judith Brown, Andrew J. Richardson, Vladimir Laptikvoksky, Stuart Reeves, Nicola Weber, Sam B. Weber

The establishment of large-scale marine protected areas (LSMPAs) has emerged as one of the defining trends in ocean conservation over recent decades. To assess the potential benefits of such designations, it is necessary to understand the nature of the threats that have been excluded. Here, we summarise over 25 years of historical catch and effort data for a pelagic longline fishery that formerly operated within the recently designated LSMPA surrounding Ascension Island (UK), using data compiled from logbooks and observer programmes. Licenced fishing by foreign vessels (primarily flagged to Taiwan and Japan) operated intermittently in the Ascension Island exclusive economic zone (EEZ) between 1988 and 2016, with catch peaking at over 5000 t year−1 in the early 1990s. Bigeye tuna (Thunnus obesus) was the dominant species targeted (76% of total catch weight) whilst oceanic sharks (e.g. blue shark Prionace glauca) and other predatory pelagic finfish (e.g. longnose lancetfish Alepisaurus ferox) appear to have presented a sizable bycatch risk, accounting for 37% of total individuals caught in local observer data. The fishery displayed strong seasonality, with two thirds of activity occurring between December and March and was consistently concentrated in the northwest of the EEZ. This distribution closely aligns with recent satellite-derived vessel tracking data which suggests that a regional longline fishing hotspot remains in the high seas area adjacent to the northwest of the Ascension Island MPA. Our results suggest that predatory pelagic fish and sharks will be the most direct beneficiaries of the Ascension Island MPA, although the high mobility of these species may lessen any conservation impacts, given intense the fishing effort in adjacent high seas areas. While illegal fishing remains a potential threat, the spatiotemporal predictability of the historic fishery may be useful in identifying areas of elevated risk for targeted enforcement in this large, remote MPA.

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引用次数: 0
Understanding the Population Dynamics of Dusky Dolphins (Lagenorhynchus obscurus) in Golfo Nuevo, Patagonia, Through Long-Term Monitoring
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-14 DOI: 10.1002/aqc.70072
B. M. Coronel-Montigel, R. Loizaga, M. Degrati

Estimates of apparent survival and abundance are crucial for understanding the population dynamics of sentinel species. To achieve this, it is necessary to establish a baseline of these parameters for effective management planning in areas strongly impacted. This is the case of the dusky dolphin (Lagenorhynchus obscurus), a species inhabiting the Argentine coasts. In Golfo Nuevo, information on the demographic parameters of this species, which coexists with tourism activities, remains insufficient. In this study, the abundance of dusky dolphins in Golfo Nuevo, Patagonia, Argentina, was estimated through long-term monitoring using the mark-recapture model for open populations (POPAN model). Moreover, the apparent survival rate of this species was estimated for the first time through live recaptures using the Cormack–Jolly–Seber (CJS) model. Photo-identification surveys were conducted from 2004 to 2022, and models were built using the MARK program, selecting the best models based on the lowest AIC. Our results suggest that in Golfo Nuevo, the apparent survival rate is high, around 0.95 ± 0.01, whereas the local abundance reached 2862.81 individuals throughout the entire sampling period. The number of individuals showed an increase with an average annual change rate of 4.65%. These findings represent a baseline estimate of abundance, apparent survival and population trend for dusky dolphins. However, future studies should prioritize estimates of site fidelity and emigration to achieve accurate estimations of true survival rates for the species. Our results contribute to the understanding of dusky dolphin population dynamics and can be considered in management and conservation projects at the local level.

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引用次数: 0
An Unusual Protuberant Lithophyllum sp. From Southern Spain Increases Structural Complexity in Urchin Barrens
IF 2.5 3区 环境科学与生态学 Q3 ENVIRONMENTAL SCIENCES Pub Date : 2025-02-14 DOI: 10.1002/aqc.70090
Dino Angelo E. Ramos, Jesús Del Río, Julio Peñas, Juan C. Braga

Urchin barrens (‘blanquizales’) are habitats dominated by encrusting non-geniculate coralline algae and maintained by urchin grazing. Taxonomic information of coralline communities in Mediterranean blanquizales is limited. Lumpy to fruticose coralline algal specimens, unusual in blanquizales, were found along the southern Spanish coast. Sequences from these specimens resolved with foliose samples morpho-anatomically identified as Lithophyllum dentatum. Initial observations suggested that this protuberant Lithophyllum species increases diversity in the otherwise species-poor exposed blanquizales. When present, higher macroalgal cover was observed with algae and microfauna frequently observed as epibiotic among the coralline's protuberances.

{"title":"An Unusual Protuberant Lithophyllum sp. From Southern Spain Increases Structural Complexity in Urchin Barrens","authors":"Dino Angelo E. Ramos,&nbsp;Jesús Del Río,&nbsp;Julio Peñas,&nbsp;Juan C. Braga","doi":"10.1002/aqc.70090","DOIUrl":"https://doi.org/10.1002/aqc.70090","url":null,"abstract":"<div>\u0000 \u0000 <p>Urchin barrens (‘blanquizales’) are habitats dominated by encrusting non-geniculate coralline algae and maintained by urchin grazing. Taxonomic information of coralline communities in Mediterranean blanquizales is limited. Lumpy to fruticose coralline algal specimens, unusual in blanquizales, were found along the southern Spanish coast. Sequences from these specimens resolved with foliose samples morpho-anatomically identified as <i>Lithophyllum dentatum</i>. Initial observations suggested that this protuberant <i>Lithophyllum</i> species increases diversity in the otherwise species-poor exposed blanquizales. When present, higher macroalgal cover was observed with algae and microfauna frequently observed as epibiotic among the coralline's protuberances.</p>\u0000 </div>","PeriodicalId":55493,"journal":{"name":"Aquatic Conservation-Marine and Freshwater Ecosystems","volume":"35 2","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143404422","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Aquatic Conservation-Marine and Freshwater Ecosystems
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