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History and Philosophy of the Life Sciences最新文献

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Constraint-based reasoning in cell biology: on the explanatory role of context. 细胞生物学中基于限制的推理:关于上下文的解释作用。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-28 DOI: 10.1007/s40656-024-00628-4
Karl S Matlin, Sara Green

Cell biologists, including those seeking molecular mechanistic explanations of cellular phenomena, frequently rely on experimental strategies focused on identifying the cellular context relevant to their investigations. We suggest that such practices can be understood as a guided decomposition strategy, where molecular explanations of phenomena are defined in relation to natural contextual (cell) boundaries. This "top-down" strategy contrasts with "bottom-up" reductionist approaches where well-defined molecular structures and activities are orphaned by their displacement from actual biological functions. We focus on the central role of microscopic imaging in cell biology to uncover possible constraints on the system. We show how identified constraints are used heuristically to limit possible mechanistic explanations to those that are biologically meaningful. Historical examples of this process described here include discovery of the mechanism of oxidative phosphorylation in mitochondria, molecular explanation of the first steps in protein secretion, and identification of molecular motors. We suggest that these instances are examples of a form of downward causation or, more specifically, constraining relations, where higher-level structures and variables delimit and enable lower-level system states. The guided decomposition strategy in our historical cases illustrates the irreducibility of experimentally identified constraints in explaining biological activities of cells. Rather than viewing decomposition and recomposition as separate epistemic activities, we contend that they need to be iteratively integrated to account for the ontological complexity of multi-level systems.

细胞生物学家,包括那些寻求对细胞现象进行分子机理解释的人,经常依赖于实验策略,重点是确定与其研究相关的细胞背景。我们认为,这种做法可以理解为一种有指导的分解策略,即根据自然环境(细胞)边界来定义对现象的分子解释。这种 "自上而下 "的策略与 "自下而上 "的还原论方法形成鲜明对比,在后者中,定义明确的分子结构和活动因脱离实际生物功能而成为孤儿。我们重点关注显微成像在细胞生物学中的核心作用,以发现系统可能存在的制约因素。我们展示了如何启发式地利用所发现的制约因素,将可能的机理解释限制在具有生物学意义的范围内。这里描述的这一过程的历史实例包括线粒体氧化磷酸化机制的发现、蛋白质分泌第一步的分子解释以及分子马达的鉴定。我们认为,这些实例是一种顺向因果关系或更具体地说是制约关系的例子,在这种关系中,高层结构和变量限定并促成了低层系统状态。我们历史案例中的引导分解策略说明,在解释细胞的生物活动时,实验确定的约束条件是不可还原的。我们不认为分解和重组是独立的认识活动,而是认为它们需要反复整合,以解释多层次系统本体论的复杂性。
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引用次数: 0
A history of childhood schizophrenia and lessons for autism. 儿童精神分裂症的历史和对自闭症的启示。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-12 DOI: 10.1007/s40656-024-00627-5
Sam Fellowes

The diagnosis of childhood schizophrenia was widely employed in the U.S. from the 1930s to the late 1970s. In this paper I will provide a history of the diagnosis. Some of the earliest publications on childhood schizophrenia outlined the notion that childhood schizophrenia had different types. I will outline the development of these types, outlining differing symptoms and causes associated with various types. I outline how different types of childhood schizophrenia were demarcated from one another primarily on age of onset and the type of psychosis which was believed to be present. I will outline how various child psychiatrists viewed the types of childhood schizophrenia posited by other child psychiatrists. I will outline the process of abandoning childhood schizophrenia. I use my history to challenge what I believe are misconceptions about childhood schizophrenia. Also, I will use my history to draw lessons for thinking about modern notions of autism. It shows potential problems around formulating psychiatric diagnoses around causes and how compromises might be needed to prevent those problems. Additionally, childhood schizophrenia shows that psychiatrists could formulate subtypes that are not based upon functioning levels and that we can conceive of subtypes as dynamic whereby someone can change which subtype they exhibit over time.

从 20 世纪 30 年代到 70 年代末,儿童精神分裂症的诊断在美国被广泛使用。在本文中,我将介绍这一诊断的历史。最早的一些有关儿童精神分裂症的出版物概述了儿童精神分裂症有不同类型的概念。我将概述这些类型的发展过程,概述与各种类型相关的不同症状和病因。我将概述不同类型的儿童精神分裂症是如何主要根据发病年龄和被认为存在的精神病类型来相互区分的。我将概述不同的儿童精神病学家是如何看待其他儿童精神病学家提出的儿童精神分裂症类型的。我将概述放弃儿童精神分裂症的过程。我将用我的经历来质疑我认为对儿童精神分裂症的误解。此外,我还将利用我的历史为思考自闭症的现代概念提供借鉴。它显示了围绕病因制定精神科诊断可能存在的问题,以及为避免这些问题可能需要做出的妥协。此外,童年精神分裂症还表明,精神科医生可以制定不以功能水平为基础的亚型,而且我们可以将亚型设想为动态的,即某人可以随着时间的推移而改变他们所表现出的亚型。
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引用次数: 0
The life sciences and the history of analytic philosophy. 生命科学与分析哲学史。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-01 DOI: 10.1007/s40656-024-00622-w
Andreas Vrahimis

Comparative to the commonplace focus onto developments in mathematics and physics, the life sciences appear to have received relatively sparse attention within the early history of analytic philosophy. This paper addresses two related aspects of this phenomenon. On the one hand, it asks: to the extent that the significance of the life sciences was indeed downplayed by early analytic philosophers, why was this the case? An answer to this question may be found in Bertrand Russell's 1914 discussions of the relation between biology and philosophy. Contrary to received views of the history of analytic philosophy, Russell presented his own 'logical atomism' in opposition not only to British Idealism, but also to 'evolutionism'. On the other hand, I will question whether this purported neglect of the life sciences does indeed accurately characterise the history of analytic philosophy. In answering this, I turn first to Susan Stebbing's criticisms of Russell's overlooking of biology, her influence on J.H. Woodger, and her critical discussion of T.H. Huxley's and C.H. Waddington's application of evolutionary views to philosophical questions. I then discuss the case of Moritz Schlick, whose evolutionist philosophy has been overlooked within recent debates concerning Logical Empiricism's relation to the philosophy of biology.

与人们对数学和物理学发展的普遍关注相比,生命科学在分析哲学的早期历史中受到的关注似乎相对较少。本文探讨了这一现象的两个相关方面。一方面,本文提出了这样一个问题:既然生命科学的重要性确实被早期分析哲学家们淡化了,那么为什么会出现这种情况呢?这个问题的答案可以在伯特兰-罗素 1914 年关于生物学与哲学关系的讨论中找到。与公认的分析哲学史观点相反,罗素提出了自己的 "逻辑原子论",不仅反对英国唯心主义,而且反对 "进化论"。另一方面,我将质疑这种所谓的对生命科学的忽视是否确实准确地描述了分析哲学史。在回答这个问题时,我首先会提到苏珊-斯泰宾(Susan Stebbing)对罗素忽视生物学的批评、她对 J.H. Woodger 的影响以及她对 T.H. Huxley 和 C.H. Waddington 将进化论观点应用于哲学问题的批判性讨论。然后,我讨论了莫里茨-施利克的情况,他的进化论哲学在最近有关逻辑经验主义与生物学哲学关系的辩论中被忽视了。
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引用次数: 0
States of Resistance: nosocomial and environmental approaches to antimicrobial resistance in Lebanon. 抗药性状态:黎巴嫩抗菌药耐药性的病原微生物和环境方法。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-08-01 DOI: 10.1007/s40656-024-00624-8
Louis-Patrick Haraoui, Anthony Rizk, Hannah Landecker

Drawing on institutional historical records, interviews and student theses, this article charts the intersection of hospital acquired illness, the emergence of antimicrobial resistance (AMR), environments of armed conflict, and larger questions of social governance in the specific case of the American University of Beirut Medical Center (AUBMC) in Lebanon. Taking a methodological cue from approaches in contemporary scientific work that understand non-clinical settings as a fundamental aspect of the history and development of AMR, we treat the hospital as not just nested in a set of social and environmental contexts, but frequently housing within itself elements of social and environmental history. AMR in Lebanon differs in important ways from the settings in which global protocols for infection control or rubrics for risk factor identification for resistant nosocomial outbreaks were originally generated. While such differences are all too often depicted as failures of low and middle-income countries (LMIC) to maintain universal standards, the historical question before us is quite the reverse: how have the putatively universal rubrics of AMR and hospital infection control failed to take account of social and environmental conditions that clearly matter deeply in the evolution and spread of resistance? Focusing on conditions of war as an organized chaos in which social, environmental and clinical factors shift dramatically, on the social and political topography of patient transfer, and on a missing "meso" level of AMR surveillance between the local and global settings, we show how a multisectoral One Health approach to AMR could be enriched by an answering multisectoral methodology in history, particularly one that unsettles a canonical focus on the story of AMR in the Euro-American context.

本文以黎巴嫩贝鲁特美国大学医疗中心(AUBMC)为具体案例,利用机构历史记录、访谈和学生论文,描绘了医院获得性疾病、抗菌药耐药性(AMR)的出现、武装冲突环境以及更广泛的社会治理问题之间的交叉点。当代科学研究将非临床环境理解为 AMR 历史和发展的一个基本方面,我们借鉴了这种研究方法,将医院视为不仅嵌套在一系列社会和环境背景中,而且经常包含社会和环境历史元素的地方。黎巴嫩的 AMR 与最初制定全球感染控制协议或耐药院内爆发风险因素识别标准的环境有很大不同。虽然这种差异常常被描述为中低收入国家(LMIC)未能保持普遍标准,但我们面前的历史问题却恰恰相反:AMR 和医院感染控制的所谓普遍标准为何未能考虑到社会和环境条件,而这些条件显然对耐药性的演变和传播有着深远影响?战争是一种有组织的混乱状态,社会、环境和临床因素在其中发生了巨大变化,病人转院的社会和政治地形,以及地方和全球环境之间缺失的 "中观 "AMR 监控,这些因素都是我们关注的重点,我们要说明的是,历史上的多部门方法论,尤其是打破了以欧美背景下的 AMR 故事为核心的传统方法论,如何能够丰富针对 AMR 的多部门 "同一健康 "方法。
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引用次数: 0
Malin Ah-King, The female turn. How evolutionary science shifted perceptions about females, Singapore: Palgrave MacMillan, 2022. Malin Ah-King, The female turn.进化科学如何改变人们对女性的看法》,新加坡:Palgrave MacMillan, 2022.
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-26 DOI: 10.1007/s40656-024-00621-x
Jacopo Ambrosj
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引用次数: 0
Sara Green, Animal models of human disease, 2024, Cambridge: Cambridge University Press. 萨拉-格林,《人类疾病的动物模型》,2024 年,剑桥:剑桥大学出版社。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-25 DOI: 10.1007/s40656-024-00626-6
Héloïse Athéa
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引用次数: 0
William Bechtel & Linus Ta-Lun Huang, Philosophy of neuroscience, 2022. Cambridge University Press. William Bechtel & Linus Ta-Lun Huang,《神经科学哲学》,2022 年。剑桥大学出版社。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-25 DOI: 10.1007/s40656-024-00625-7
Matthew Perkins-McVey
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引用次数: 0
Bernd Rosslenbroich, Properties of life. Toward a theory of organismic biology. Vienna series in theoretical biology, 2023, The MIT Press, 326 Pages, ISBN 9780262546201 (Paperback). Bernd Rosslenbroich,《生命的属性》。迈向有机体生物学理论。维也纳理论生物学丛书》,2023 年,麻省理工学院出版社,326 页,ISBN 9780262546201(平装本)。
IF 1.6 3区 哲学 Q1 HISTORY & PHILOSOPHY OF SCIENCE Pub Date : 2024-07-25 DOI: 10.1007/s40656-024-00623-9
Christoph J Hueck
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引用次数: 0
Narratives in exposomics: A reversed heuristic determinism? 阐释学中的叙事:逆向启发式决定论?
IF 1.6 3区 哲学 Q1 Arts and Humanities Pub Date : 2024-06-26 DOI: 10.1007/s40656-024-00620-y
Francesca Merlin, Élodie Giroux

Since the completion of the Human Genome Project (HGP), biomedical sciences have moved away from a gene-centred view and towards a multi-factorial one in which environment, broadly speaking, plays a central role in the determination of human health and disease. Environmental exposures have been shown to be highly prevalent in disease causation. They are considered as complementary to genetic factors in the etiology of diseases, hence the introduction of the concept of the "exposome" as encompassing the totality of human environmental exposures, from conception onwards (Wild in Cancer Epidemiol Biomark Prev 14:1847-1850, 2005), and the launch of the Human Exposome Project (HEP) which aims to complement the HGP. At first sight, and seen as complementary to the genome, the exposome could thus appear as contributing to the rise of novel postgenomic deterministic narratives which place the environment at their core. Is this really the case? If so, what sort of determinism is at work in exposomics research? Is it a case of environmental determinism, and if so, in what sense? Or is it a new sort of deterministic view? In this paper, we first show that causal narratives in exposomics are still very similar to gene-centred deterministic narratives. They correspond to a form of Laplacian determinism and, above all, to what Claude Bernard called the "determinism of a phenomenon". Second, we introduce the notion of "reversed heuristic determinism" to characterize the specific deterministic narratives present in exposomics. Indeed, the accepted sorts of external environmental exposures conceived as being at the origins of diseases are determined, methodologically speaking, by their identifiable internal and biological markers. We conclude by highlighting the most relevant implications of the presence of this heuristic determinism in exposomics research.

自人类基因组计划(HGP)完成以来,生物医学科学已从以基因为中心的观点转向多因素观点,即从广义上讲,环境在决定人类健康和疾病方面发挥着核心作用。环境暴露已被证明在疾病致因中非常普遍。因此,人们提出了 "暴露体"(exposome)的概念,认为它包含了人类从受孕开始所接触的全部环境因素(Wild 在 Cancer Epidemiol Biomark Prev 14:1847-1850, 2005 上发表的文章),并启动了人类暴露体项目(HEP),旨在对人类基因组计划(HGP)进行补充。乍一看,暴露组似乎是对基因组的补充,因此,暴露组似乎有助于以环境为核心的新型后基因组决定论的兴起。事实果真如此吗?如果是这样,那么在暴露组学研究中起作用的是哪种决定论呢?是环境决定论吗?还是一种新的决定论观点?在本文中,我们首先表明,暴露量子学中的因果叙述仍然与以基因为中心的决定论叙述非常相似。它们对应于一种拉普拉斯决定论,尤其是克劳德-贝尔纳所说的 "现象决定论"。其次,我们引入了 "反向启发式决定论 "的概念,以描述暴露论中的特定决定论叙事。事实上,被认为是疾病起源的各种公认的外部环境暴露,从方法论上讲,是由其可识别的内部和生物标记决定的。最后,我们将强调这种启发式决定论在暴露量子学研究中存在的最重要意义。
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引用次数: 0
On the relationship between scientific theory and ontology in everything flows. 论万物流动中科学理论与本体论之间的关系。
IF 1.6 3区 哲学 Q1 Arts and Humanities Pub Date : 2024-05-30 DOI: 10.1007/s40656-024-00618-6
Markus Maier

In their anthology Everything Flows: Towards a Processual Philosophy of Biology, Daniel J. Nicholson and John Dupré argue that modern theories of biology imply that the fundamental structure of reality is processual at its core. In the present work, I first examine the implicit and explicit metaphysical presuppositions the editors make in order to allow for such an inference from scientific theory to ontology. After showing the difficulties of a naïve transfer of theoretical entities to fundamental ontology, I argue that the editors can nevertheless extend their claims beyond the mere articulation of different domain ontologies. This leads to the idea of a scientifically informed induction base for an ontology of processes.

在他们的选集《万物流动:丹尼尔-尼科尔森(Daniel J. Nicholson)和约翰-杜普雷(John Dupré)认为,现代生物学理论意味着现实的基本结构在其核心上是过程性的。在本著作中,我首先研究了编者们为了允许从科学理论到本体论的推论而做出的隐含和明确的形而上学预设。在展示了将理论实体天真地转移到基本本体论的困难之后,我认为编者们可以将其主张扩展到不同领域本体论的表述之外。这就引出了为过程本体论建立一个有科学依据的归纳基础的想法。
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引用次数: 0
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History and Philosophy of the Life Sciences
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