7-Nitrobenz-2-oxa-1,3-diazole (NBD) is a widely used fluorescent label for proteins, peptides, and lipids. Its chloride derivative, NBD-Cl, can be highly reactive toward thiol and amine groups, forming stable fluorescent adducts. When labeling the ubiquitous lipid molecule ceramide, NBD-ceramide (NBDCER) aids in visualizing sphingolipid metabolism in cells. This study investigates intracellular molecular changes induced by NBD-Cl and NBDCER using surface-enhanced Raman scattering (SERS). SERS spectra from the endolysosomal compartment of two cell lines, 3T3 fibroblast cells and J774 macrophage cells, obtained with gold nanoparticles as probes, reveal changes in the molecular composition and interactions under different incubation conditions. Applying the random forest (RF)-based algorithm surrogate minimal depth (SMD) to the SERS data to identify important spectral classifiers and their relations, both NBD-Cl and NBDCER are found to alter the biochemical makeup of the endolysosomal compartment. The data indicate significant structural and interaction changes in the molecular constituents of the cells that are in agreement with possible interference of the labels in the cellular metabolism and the reaction of NBD-Cl with functional groups of cellular molecules.
Ammonia synthesis from elements using the Haber–Bosch (HB) process will grow in demand above the present world-scale application through the need to transport renewable energy. The actual broad academic research effort concentrates on novel solutions, as the existing technology is considered to be mature. The paper investigates this statement by analyzing the relevance of the foundational model for optimizing the iron HB catalyst. The epistemic analysis dwells upon reductionistic assumptions, opening science gaps between model catalysts and performance operation. The mechanistic understanding of the HB process limits expectations for future development but opens up aspects of the optimization potential. It lies in the material chemistry of how the structure of the active sites, which is fixed in space and time in the model concept, is realized in performance catalysts. Significant chances are seen to further improve the existing reliable technology through optimization of the iron-based material. Its intricate property profile precludes success by further empirical searches but requires the full power of a knowledge-based approach guided by a suggested development of the functional model.