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Stable Light-Trapping SERS Substrates with Bioinspired Arrays for Biochemical Sensing 稳定的光捕获SERS基底与生物启发阵列用于生化传感
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-30 DOI: 10.1021/acs.jpcc.5c08632
Maohua Quan, Yuting Qiu, Zhou Yang
In Raman spectroscopy, the optimal signal is obtained when the sample is irradiated by a laser at normal incidence. Ensuring both signal stability and high sensitivity for capturing analyte molecules on nonflat or tilted substrates remains difficult, especially in the process of rapid testing. Here, 3D hemispherical polydimethylsiloxane (PDMS) substrate with bioinspired compound-eye structure was fabricated by utilizing the liquid–liquid interface self-assembly and transfer technique. Using Au monolayer films decorated PDMS substrate as a surface-enhanced Raman scattering (SERS) substrate. The rotational symmetry of the bioinspired SERS substrate architecture enables stable SERS performance even under substrate tilting from 0 to 75°, demonstrating excellent suitability for field-based detection applications. The hemispherical SERS substrate demonstrated a minimum detectable urea concentration of 10–5 M, which is significantly lower than the minimum urea level (10–3 M) in the tear fluid of the body.
在拉曼光谱中,当样品被正入射激光照射时获得最佳信号。确保在非平坦或倾斜的衬底上捕获分析物分子的信号稳定性和高灵敏度仍然是困难的,特别是在快速测试过程中。利用液-液界面自组装和转移技术,制备了具有仿生复眼结构的三维半球形聚二甲基硅氧烷(PDMS)底物。采用金单层膜装饰PDMS衬底作为表面增强拉曼散射衬底。生物启发的SERS基板结构的旋转对称性即使在基板倾斜从0到75°的情况下也能实现稳定的SERS性能,证明了出色的现场检测应用适用性。半球形SERS底物显示最低可检测尿素浓度为10-5 M,显著低于人体泪液中最低尿素水平(10-3 M)。
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引用次数: 0
Effect of Gold Nanoparticle Size and DNA Concentration on DNA-Nanoparticles Complexation: A Molecular Dynamics Study 金纳米颗粒大小和DNA浓度对DNA-纳米颗粒络合的影响:分子动力学研究
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-29 DOI: 10.1021/acs.jpcc.5c07253
J. Hingies Monisha, Vasumathi Velachi, Prabal K. Maiti
Ensuring the stability of the AuNP-gene complex until it reaches the target sites is a crucial factor for the success of gene therapy. Although different AuNP sizes and AuNP-to-DNA ratios are investigated for specific therapeutic needs, their role in the stability and packaging of AuNP-DNA complex remains unclear. In this study, we employ all-atom molecular dynamics simulations to investigate the influence of cationic ligand-functionalized AuNP (CAuNP) size and CAuNP-to-DNA ratio on DNA wrapping and binding affinity. The obtained results show that a single DNA interacting with smaller CAuNPs exhibits greater bending and wrapping due to their higher curvature. However, when two DNAs bind to smaller CAuNPs, electrostatic repulsion prevents the effective wrapping, which leads the DNAs to twist from their original orientation. Such behavior is not observed with larger CAuNPs since their increased size may mitigate repulsive forces. Further, the analysis on axial bending angle reveals that smaller AuNPs induce sharper DNA bending and larger AuNPs promote smoother bending. In addition, the potential of mean force (PMF) analysis confirms a stronger DNA binding affinity for larger AuNPs, with affinity decreasing when two DNAs attach to a single CAuNP. Our results from the DNA loading capacity calculations provide insights into the maximum number of DNA molecules that can be loaded onto CAuNPs of a given size. These findings offer key insights into optimizing the size of AuNP and DNA-to-AuNP ratios for the development of efficient gene delivery systems.
确保aunp基因复合物的稳定性,直到它到达目标位点是基因治疗成功的关键因素。尽管不同的AuNP大小和AuNP与dna的比例被研究用于特定的治疗需求,但它们在AuNP- dna复合物的稳定性和包装中的作用仍不清楚。在这项研究中,我们采用全原子分子动力学模拟来研究阳离子配体功能化的AuNP (CAuNP)大小和CAuNP与DNA的比例对DNA包裹和结合亲和力的影响。所得结果表明,单个DNA与较小的CAuNPs相互作用,由于其更高的曲率而表现出更大的弯曲和包裹。然而,当两个dna与较小的CAuNPs结合时,静电斥力会阻止有效的包裹,从而导致dna从原来的方向扭曲。这种行为在较大的CAuNPs中没有观察到,因为它们的增大可能会减轻排斥力。此外,对轴向弯曲角的分析表明,较小的AuNPs诱导DNA弯曲更尖锐,而较大的AuNPs促进弯曲更平滑。此外,平均力电位(PMF)分析证实了对较大的aunp具有更强的DNA结合亲和力,当两个DNA与单个CAuNP结合时,亲和力降低。我们的DNA装载能力计算结果提供了可以装载到给定大小的CAuNPs上的最大DNA分子数量的见解。这些发现为优化AuNP的大小和dna与AuNP的比率提供了关键的见解,以开发有效的基因传递系统。
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引用次数: 0
Catalytic Capability of Graphene/Cu Heterostructures for Oxygen Evolution Reaction Activated by the Synergistic Effect of Defects and Strain 石墨烯/Cu异质结构在缺陷和应变协同作用下催化析氧反应的性能
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c04627
Jing Xu, Wanlin Guo, Yufeng Guo
Developing catalysts based on graphene heterostructures is an attractive aspect for advancing the application of graphene. Our extensive first-principles calculations and ab initio molecular dynamics simulations reveal that the catalytic capability of graphene/Cu heterostructures for the electrochemical oxygen evolution reaction (OER) can be activated and significantly enhanced by the synergistic effect of introducing Stone–Wales (SW) defects into graphene and applying biaxial compressive strains to the heterostructures. The overpotential of the SW-defected graphene/Cu heterostructure for the OER decreases to 0.39 V under a biaxial compressive strain of −3%, which is lower than most theoretical overpotentials obtained when using graphene heterostructures as catalysts. The alteration and improvement in the catalytic capability of SW-defected graphene/Cu heterostructures under compressive strains are mainly attributed to the facilitated desorption of intermediates on graphene, the decreased reaction activation energy, and the charge transfer from the SW defect sites to the Cu substrates.
开发基于石墨烯异质结构的催化剂是推进石墨烯应用的一个有吸引力的方面。我们广泛的第一性原理计算和从头算分子动力学模拟表明,石墨烯/Cu异质结构对电化学析氧反应(OER)的催化能力可以通过在石墨烯中引入Stone-Wales (SW)缺陷和在异质结构上施加双轴压缩应变的协同效应被激活并显著增强。在- 3%的双轴压缩应变下,sw缺陷的石墨烯/Cu异质结构对OER的过电位降至0.39 V,低于使用石墨烯异质结构作为催化剂时获得的大多数理论过电位。SW缺陷石墨烯/Cu异质结构在压缩应变下催化性能的改变和提高主要是由于中间产物在石墨烯上的脱附、反应活化能的降低以及SW缺陷部位的电荷向Cu基体的转移。
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引用次数: 0
Scandia as the Oxygen Vacancy Stabilizer to Boost the Ionic Conductivity of Sc–Y-Codoped Zirconia 钪作为氧空位稳定剂提高sc - y共掺杂氧化锆的离子电导率
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c08205
Shu-Hui Guan, Yi-Wen Wei, Cheng Shang, Zhi-Pan Liu
Scandia (Sc) and yttria (Y) codoped zirconia (ScYSZ) emerged as a promising candidate for high-performance solid electrolyte materials utilized in intermediate-temperature solid oxide fuel cells (IT-SOFCs). While it exhibits a record-high ionic conductivity (∼0.10 S/cm at 800 °C), the physical origin of the superior performance remains poorly understood, limiting the further optimization and the application in IT-SOFC. Here, we construct the Sc–Y–Zr–O global neural network potential and explore systematically the thermodynamic landscape of ScYSZ across 65 different compositions (6.7–14.3 mol % dopants). From millions of candidate structures, we identify a thermodynamically stable cubic phase region at Sc/Y < 1 with Y2O3 ≥ 8 mol %. Large-scale molecular dynamics simulations further show that ScYSZ at Sc2O3 = 3 mol % and Y2O3 = 8 mol % yields an exceptional ionic conductivity of 0.13 S/cm at 800 °C, surpassing conventional 8 mol % Y-stabilized zirconia (YSZ) by an order of magnitude. Our analysis reveals that the presence of Sc not only increases the Ov concentration by allowing ⟨111⟩ Ov–Ov pairs but also reduces the oxygen migration barriers markedly. Our results not only pinpoint the optimal ScYSZ composition for IT-SOFC applications theoretically but also establish a general framework for the rational design of advanced solid electrolyte materials.
钪(Sc)和氧化钇(Y)共掺杂氧化锆(ScYSZ)是中温固体氧化物燃料电池(IT-SOFCs)中高性能固体电解质材料,具有广阔的应用前景。虽然它表现出创纪录的高离子电导率(在800°C时为~ 0.10 S/cm),但优异性能的物理来源仍然知之甚少,限制了进一步的优化和在it - sofc中的应用。在此,我们构建了Sc-Y-Zr-O全局神经网络电位,并系统地探索了65种不同成分(6.7-14.3 mol %掺杂剂)下ScYSZ的热力学景观。从数以百万计的候选结构中,我们确定了Sc/Y <; 1的热力学稳定的立方相区域,Y2O3≥8mol %。大规模分子动力学模拟进一步表明,ScYSZ在Sc2O3 = 3 mol %和Y2O3 = 8 mol %时,在800°C时的离子电导率为0.13 S/cm,比传统的8 mol % y稳定氧化锆(YSZ)高出一个数量级。我们的分析表明,Sc的存在不仅通过允许⟨111⟩的Ov - Ov对增加Ov浓度,而且还显着降低了氧迁移障碍。我们的研究结果不仅从理论上确定了IT-SOFC应用的最佳ScYSZ成分,而且为合理设计先进的固体电解质材料建立了一个总体框架。
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引用次数: 0
How Artificial Intelligence Can Advance Electrochemical Science and Identify Water Molecule Orientation on Platinum Electrodes 人工智能如何推进电化学科学和识别铂电极上的水分子取向
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c08343
Yitao He, Jiří Červenka
Electrochemistry lies at the heart of modern energy technologies, yet connecting atomic-level insights to macroscopic performance remains an enduring challenge. Quantum-based simulations, such as density functional theory, have illuminated many fundamental processes, but their reach is limited by the complexity of real electrochemical environments. Bridging these scales requires a new conceptual framework that can expose the hidden connections between theory and experiment. Here, we argue that the thoughtful integration of artificial intelligence (AI) can transform electrochemical research by unifying theory, experiment, and data-driven inference. AI-assisted frameworks can accelerate convergence between computation and experiment, revealing hidden physical relationships and enabling closed-loop discovery. Realizing this vision will require developing transparent, interpretable AI models that earn the same scientific trust as human reasoning, unlocking deeper understanding and innovation across the electrochemical sciences.
电化学是现代能源技术的核心,但将原子水平的见解与宏观性能联系起来仍然是一个持久的挑战。基于量子的模拟,如密度泛函理论,已经阐明了许多基本过程,但它们的范围受到实际电化学环境的复杂性的限制。弥合这些尺度需要一个新的概念框架,可以揭示理论和实验之间隐藏的联系。在这里,我们认为人工智能(AI)的深思熟虑的整合可以通过统一理论,实验和数据驱动的推理来改变电化学研究。人工智能辅助框架可以加速计算和实验之间的融合,揭示隐藏的物理关系,实现闭环发现。实现这一愿景需要开发透明、可解释的人工智能模型,以获得与人类推理相同的科学信任,从而在电化学科学中开启更深层次的理解和创新。
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引用次数: 0
Optical Reflection of Crystals of Dye Molecules and Strong Coupling between Light and Matter 染料分子晶体的光学反射与光与物质的强耦合
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c08141
Rens Cuijpers, Wietse F. M. van Geel, Dorothée S. Mader, K. Danique Grevink, Matthijs van Velzen, Martin Lutz, Stefan C. J. Meskers
Materials consisting of organic dye molecules play an important role as pigments, as active layer in organic light emitting diodes or solar cells, and as bistable medium in optical transistors and switches. Yet there is currently no working protocol to accurately predict one of the most basic optical properties of these solids: their reflection spectrum. Here we develop a method to calculate the reflection spectrum of crystals of dye molecules based on the crystal structure and optical absorption of the dye in solution. We treat the interaction between light and matter in the crystals as strong. Electromagnetic four-potentials are gauged consistently, and their boundary conditions at the reflecting interface are derived. Finally, we include both excitonic and charge transfer interactions between molecules in the crystals. We test our approach on a large data set of reflection spectra and crystal structures including several industrial pigments.
由有机染料分子组成的材料在有机发光二极管或太阳能电池中起着颜料、有源层、光晶体管和开关中的双稳介质等重要作用。然而,目前还没有可行的方案来准确预测这些固体最基本的光学性质之一:它们的反射光谱。本文提出了一种基于晶体结构和染料在溶液中的光吸收来计算染料分子晶体反射光谱的方法。我们认为晶体中光与物质之间的相互作用很强。对电磁四势进行了一致性测量,并推导了其在反射界面处的边界条件。最后,我们将晶体中分子之间的激子相互作用和电荷转移相互作用都包括在内。我们在包括几种工业颜料的反射光谱和晶体结构的大型数据集上测试了我们的方法。
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引用次数: 0
Compression Rate Dependence and Hierarchical Mechanism in the Pressure-Induced Polymerization of Acrylamide: Insights from Ab Initio Molecular Dynamics 压力诱导丙烯酰胺聚合的压缩率依赖性和层次机制:从头算分子动力学的见解
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c06506
Rashid Rafeek V Valappil, Sayan Maity, Ashwini Anshu, Lavanya M. Ramaniah, Varadharajan Srinivasan
Varying the rate at which pressure is applied to a crystal is known to yield different pressure-induced polymorphic structures in experiments. In this work, we investigate the effect of pressure increase rate on pressure-induced polymerization in crystalline acrylamide, using room temperature constant pressure ab initio molecular dynamics simulations. Simulations performed with two different compression rates revealed very different structural evolutions of the system at lower pressures. Fast (nonequilibrated) pressure increase yields disordered (polymer) structures with unanticipated linkages for pressures up to 67 GPa. On the other hand, slow (quasi-static) pressure increase gives no new structures until 64 GPa. At pressures greater than 67 GPa, both pathways converge toward an ordered 3-dimensional polymer through a hierarchical mechanism involving 1-dimensional polymeric intermediates. The structural and electronic details of the mechanisms leading to polymerization are discussed.
在实验中,已知改变施加于晶体的压力速率会产生不同的压力诱导的多晶结构。在这项工作中,我们研究了压力增加速率对结晶丙烯酰胺压力诱导聚合的影响,采用室温恒压从头算分子动力学模拟。用两种不同的压缩率进行的模拟显示,在较低压力下,系统的结构演变非常不同。当压力高达67gpa时,快速(非平衡)的压力增加会产生无序(聚合物)结构,并产生意想不到的联系。另一方面,缓慢的(准静态)压力增加在64 GPa之前不会产生新的结构。在大于67 GPa的压力下,这两种途径通过涉及一维聚合物中间体的分层机制向有序的三维聚合物收敛。讨论了聚合机理的结构和电子细节。
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引用次数: 0
Revealing the Intricate Structure of Surface Phases of Methanol on In2O3(111) 揭示甲醇在In2O3(111)表面相的复杂结构
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c07043
Andreas Ziegler, Chiara I. Wagner, Hao Chen, Matthias A. Blatnik, Alexander Wolfram, Anne Brandmeier, Zdeněk Jakub, Michele Riva, Jiri Pavelec, Michael Schmid, Ulrike Diebold, Bernd Meyer, Margareta Wagner
Research on sustainable energy has intensified to reduce greenhouse gas emissions, especially CO2. One promising strategy is the catalytic reduction of CO2 to methanol, and indium oxide (In2O3) has emerged as a highly efficient catalyst, with high turnover rates and selectivity. This work investigates methanol, the end product of CO2 reduction, and its interaction with the In2O3(111) surface. Utilizing an ultrahigh vacuum (UHV) environment, this study combines temperature-programmed desorption (TPD), X-ray photoelectron spectroscopy (XPS), noncontact atomic force microscopy (nc-AFM), scanning tunneling microscopy (STM), and density functional theory (DFT) calculations. The coverages investigated range from 1 to 12 methanol molecules per unit cell. The results are compared to water adsorption on In2O3(111), as the chemical behavior of both molecules is similar in many respects. At low coverage, the adsorption patterns and interactions with the In2O3(111) surface mirror those seen with water, including dissociative and molecular adsorption. The first three methanol molecules dissociate at specific sites within the surface unit cell, while molecular adsorption becomes favored for subsequent molecules at temperatures below 300 K. At the highest coverage (before multilayer adsorption) methanol and water exhibit distinct structures due to their differing hydrogen bonding capabilities.
为了减少温室气体特别是二氧化碳的排放,对可持续能源的研究不断加强。一种有前途的策略是催化还原CO2为甲醇,而氧化铟(In2O3)已成为一种高效的催化剂,具有高周转率和选择性。这项工作研究了甲醇,二氧化碳还原的最终产物,以及它与In2O3(111)表面的相互作用。利用超高真空(UHV)环境,本研究结合了程序升温解吸(TPD)、x射线光电子能谱(XPS)、非接触原子力显微镜(nc-AFM)、扫描隧道显微镜(STM)和密度泛函理论(DFT)计算。所研究的覆盖范围为每单元电池1到12个甲醇分子。结果与水在In2O3(111)上的吸附进行了比较,因为两种分子的化学行为在许多方面是相似的。在低覆盖率下,吸附模式和与In2O3(111)表面的相互作用反映了与水的吸附模式,包括解离和分子吸附。前三个甲醇分子在表面单元胞内的特定位置解离,而在低于300 K的温度下,分子吸附有利于随后的分子。在多层吸附之前,甲醇和水由于其不同的氢键能力而表现出不同的结构。
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引用次数: 0
Manipulation of Abnormal Thermal Conductance at the Graphene/SiC Interface through Topological Defects 通过拓扑缺陷操纵石墨烯/SiC界面的异常热导
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-28 DOI: 10.1021/acs.jpcc.5c07216
Lu Yang, Huabing Shu, Jian Zhang, Jianping Li, Gang Zhang, Kai Ren
Low interfacial thermal conductance often emerges as a primary barrier to effective heat management in advanced nanodevices. This study examines how topological defects affect the interfacial thermal conductance of graphene/SiC lateral heterostructure, utilizing nonequilibrium molecular dynamics simulations. The significant lattice mismatch between graphene and SiC results in a pristine interface that experiences severe strain and structural distortion, ultimately reducing the level of phonon transmission. By introduction of 5|8|5 topological defects, the interfacial deformation is effectively alleviated, thereby improving phonon coupling across the boundary. The results reveal an unconventional increase in interfacial thermal conductance, with the maximal value achieved when three defects are incorporated, representing a 61% improvement compared with the pristine interface. However, an excessive number of defects can lead to a reduction in the thermal conductivity. These findings demonstrate that controlled defect engineering offers a tunable pathway to optimize interfacial heat transport in 2D heterostructures, providing valuable insights for thermal management in nanoscale devices.
在先进的纳米器件中,低界面热导率经常成为有效热管理的主要障碍。本研究利用非平衡分子动力学模拟研究了拓扑缺陷如何影响石墨烯/SiC横向异质结构的界面导热性。石墨烯和碳化硅之间显著的晶格不匹配导致原始界面经历严重的应变和结构扭曲,最终降低声子传输水平。通过引入5|8 bbb5拓扑缺陷,有效地缓解了界面变形,从而改善了声子跨界耦合。结果显示,界面热导率有了非常规的增加,当加入三个缺陷时达到最大值,与原始界面相比提高了61%。然而,过多的缺陷会导致导热系数的降低。这些发现表明,控制缺陷工程为优化二维异质结构中的界面热传递提供了可调途径,为纳米级器件的热管理提供了有价值的见解。
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引用次数: 0
Spatial Density of Mayer Bond Order: Distribution of Electrons Shared and Retained by Atoms in Matter 迈耶键序的空间密度:物质中原子共享和保留电子的分布
IF 3.2 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-01-27 DOI: 10.1021/acs.jpcc.5c06583
Sujith Nedungattil Subrahmanian, , , Joyeta Saha, , , Chandrima Chakravarty, , and , Joydeep Bhattacharjee*, 

Mayer bond order (MBO) allows partitioning of total charge in a given system into overlap population components which can be interpreted as charges shared among atoms and retained by them through atomic orbitals. In this work, we formulate a spatial distribution of these partitioned components, rendering a breakup of the total charge density into individual densities of charges shared between all the available pairs of atoms, as well as charges exclusively retained by each of the atoms themselves. The spatial density of the interatomic MBOs in particular facilitates an unbiased physical description of electrons shared between two atoms, thus essentially constituting a plottable representation of a covalent bond, obtained without inducing any explicit localization of electrons between atoms, which otherwise is an inherent source of bias. We demonstrate the proposed formulation in the basis of Wannierized atomic orbitals constructed from first principles, in a few representative varieties of systems with varying degrees of interatomic hybridization, including scenarios of multicentered bonds in molecules, to metavalent bonding in periodic systems introduced and debated in the past few years. Pertinently, in GeTe, we find two electrons (2e) contributed by collinear p orbitals in each of the three Ge–Te–Ge(Te–Ge–Te) segments passing through Te(Ge), constituting a compact distribution of 2e over the 3 atom segments (3c), along with the relatively inert s electrons maintaining a spherical shape, to facilitate near completion of subshell filling of both the atoms, thus supporting the prevalence of 3c-2e metavalent bonding in the class of narrow band gap rock-salt structures.

梅尔键序(MBO)允许将给定体系中的总电荷划分为重叠居群分量,这些重叠居群分量可以解释为原子之间共享并通过原子轨道保留的电荷。在这项工作中,我们制定了这些分区组件的空间分布,将总电荷密度分解为所有可用原子对之间共享的单个电荷密度,以及每个原子本身独家保留的电荷。原子间mbo的空间密度特别有助于对两个原子之间共享的电子进行无偏物理描述,从而基本上构成了共价键的可绘图表示,而不会引起原子之间电子的任何显式定位,否则这是固有的偏倚来源。我们在从第一性原理构建的万尼化原子轨道的基础上,在几个具有不同程度的原子间杂化的具有代表性的系统中论证了所提出的公式,包括分子中多中心键的情况,以及在过去几年引入和争论的周期系统中的元价键。相应地,在GeTe中,我们发现在通过Te(Ge)的三个Ge - Te - Ge(Te - Ge - Te)段中,每一个都有两个共线p轨道贡献的电子(2e),构成了3个原子段(3c)上2e的紧凑分布,以及相对惰性的s电子保持球形,以促进两个原子的亚壳填充接近完成,从而支持3c-2e元价键在窄带隙岩盐结构类中普遍存在。
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引用次数: 0
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