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2012 IEEE 8th International Conference on E-Science最新文献

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Towards the gamification of well-being measures 走向幸福衡量的游戏化
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404457
M. Hall, S. Kimbrough, Christian Haas, Christof Weinhardt, Simon Caton
There is an overriding interest in measuring the well-being of communities and institutions: healthy (flourishing) individuals and groups perform “better” than those that are not. Capturing the facets of well-being is, however, not straightforward: it contains personal information with sometimes uncomfortable self-realizations associated to it. Yet, the benefit of such data is the ability to observe and react to imbalances of a community, i.e. it can facilitate community management. Due to its personal nature, the observation of well-being needs to leverage carefully considered constructs. To have a comprehensive look at the concept of individual well-being, we propose a gamified frame of reference within a social network platform to lower traditional entrance barriers for data collection and encourage continued usage. In our setting, participants can record aspects of their well-being as a part of their “normal” social network activities, as well as view trends of themselves and their community. To evaluate the feasibility of our approach, we present the results of an initial study conducted via Facebook.
衡量社区和机构的福祉有着压倒一切的利益:健康(繁荣)的个人和群体比那些不健康的个人和群体表现得“更好”。然而,捕捉幸福的各个方面并不简单:它包含个人信息,有时与之相关的是令人不安的自我实现。然而,这些数据的好处是能够观察和应对社区的不平衡,即它可以促进社区管理。由于其个人性质,对幸福的观察需要利用仔细考虑的结构。为了全面了解个人福祉的概念,我们在社交网络平台内提出了一个游戏化的参考框架,以降低数据收集的传统入口壁垒,并鼓励持续使用。在我们的设置中,参与者可以记录他们的健康状况,作为他们“正常”社交网络活动的一部分,也可以查看他们自己和社区的趋势。为了评估我们方法的可行性,我们提出了通过Facebook进行的初步研究的结果。
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引用次数: 11
Why workflows break — Understanding and combating decay in Taverna workflows 为什么工作流中断——理解和对抗Taverna工作流中的衰减
Pub Date : 2012-10-08 DOI: 10.1109/ESCIENCE.2012.6404482
Jun Zhao, José Manuél Gómez-Pérez, Khalid Belhajjame, G. Klyne, Esteban García-Cuesta, Aleix Garrido, K. Hettne, M. Roos, D. D. Roure, C. Goble
Workflows provide a popular means for preserving scientific methods by explicitly encoding their process. However, some of them are subject to a decay in their ability to be re-executed or reproduce the same results over time, largely due to the volatility of the resources required for workflow executions. This paper provides an analysis of the root causes of workflow decay based on an empirical study of a collection of Taverna workflows from the myExperiment repository. Although our analysis was based on a specific type of workflow, the outcomes and methodology should be applicable to workflows from other systems, at least those whose executions also rely largely on accessing third-party resources. Based on our understanding about decay we recommend a minimal set of auxiliary resources to be preserved together with the workflows as an aggregation object and provide a software tool for end-users to create such aggregations and to assess their completeness.
工作流通过显式地对其过程进行编码,为保存科学方法提供了一种流行的方法。然而,随着时间的推移,它们中的一些在重新执行或重现相同结果的能力上受到衰减的影响,这主要是由于工作流执行所需资源的不稳定性。本文基于对myExperiment存储库中的Taverna工作流集合的实证研究,对工作流衰减的根本原因进行了分析。尽管我们的分析是基于特定类型的工作流,但结果和方法应该适用于来自其他系统的工作流,至少是那些执行也主要依赖于访问第三方资源的工作流。基于我们对衰减的理解,我们建议将一组最小的辅助资源与工作流一起保存为一个聚合对象,并为最终用户提供一个软件工具来创建这样的聚合并评估它们的完整性。
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引用次数: 114
MARISSA: MApReduce Implementation for Streaming Science Applications MARISSA:流科学应用的MApReduce实现
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404432
Elif Dede, Zacharia Fadika, Jessica Hartog, M. Govindaraju, L. Ramakrishnan, D. Gunter, S. Canon
MapReduce has since its inception been steadily gaining ground in various scientific disciplines ranging from space exploration to protein folding. The model poses a challenge for a wide range of current and legacy scientific applications for addressing their “Big Data” challenges. For example: MapRe-duce's best known implementation, Apache Hadoop, only offers native support for Java applications. While Hadoop streaming supports applications compiled in a variety of languages such as C, C++, Python and FORTRAN, streaming has shown to be a less efficient MapReduce alternative in terms of performance, and effectiveness. Additionally, Hadoop streaming offers lesser options than its native counterpart, and as such offers less flexibility along with a limited array of features for scientific software. The Hadoop File System (HDFS), a central pillar of Apache Hadoop is not a POSIX compliant file system. In this paper, we present an alternative framework to Hadoop streaming to address the needs of scientific applications: MARISSA (MApReduce Implementation for Streaming Science Applications). We describe MARISSA's design and explain how it expands the scientific applications that can benefit from the MapReduce model. We also compare and explain the performance gains of MARISSA over Hadoop streaming.
MapReduce从一开始就在从太空探索到蛋白质折叠等各个科学领域稳步取得进展。该模型对当前和传统的科学应用提出了挑战,以解决他们的“大数据”挑战。例如:mapreduce最著名的实现Apache Hadoop只提供对Java应用程序的本机支持。虽然Hadoop流支持用各种语言(如C、c++、Python和FORTRAN)编译的应用程序,但在性能和有效性方面,流已经被证明是MapReduce的一个低效替代品。此外,Hadoop流提供的选项比原生流少,因此为科学软件提供的灵活性更低,功能也有限。Hadoop文件系统(HDFS)是Apache Hadoop的核心支柱,它不是一个POSIX兼容的文件系统。在本文中,我们提出了一个替代Hadoop流的框架来解决科学应用的需求:MARISSA(流科学应用的MApReduce实现)。我们描述了MARISSA的设计,并解释了它如何扩展可以从MapReduce模型中受益的科学应用程序。我们还比较并解释了MARISSA在Hadoop流上的性能提升。
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引用次数: 24
Towards HPC for the digital Humanities, Arts, and Social Sciences: Needs and challenges of adapting academic HPC for big data 面向数字人文、艺术和社会科学的高性能计算:适应大数据的学术高性能计算的需求和挑战
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404439
Kalev H. Leetaru
This paper examines the needs of emerging applications of High Performance Computing by the Humanities, Arts, and Social Sciences (HASS) disciplines and presents a vision for how the current academic HPC environment could be adapted to better serve this new class of “big data” research.
本文考察了人文、艺术和社会科学(HASS)学科对高性能计算新兴应用的需求,并提出了如何适应当前学术高性能计算环境以更好地服务于这种新型“大数据”研究的愿景。
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引用次数: 6
Service-based integration of human users in workflow-driven scientific experiments 工作流驱动的科学实验中基于服务的人类用户集成
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404435
D. Karastoyanova, Dimitrios Dentsas, D. Schumm, M. Sonntag, Lina Sun, Karolina Vukojevic-Haupt
The use of information technology in research and practice leads to increased degree of automation of tasks and makes scientific experiments more efficient in terms of cost, speed, accuracy, and flexibility. Scientific workflows have proven useful for the automation of scientific computations. However, not all tasks of an experiment can be automated. Some decisions still need to be made by human users, for instance, how an automated system should proceed in an exceptional situation. To address the need for integration of human users in such automated systems, we propose the concept of Human Communication Flows, which specify best practices about how a scientific workflow can interact with a human user. We developed a human communication framework that implements Communication Flows in a pipes-and-filters architecture and supports both notifications and request-response interactions. Different Communication Services can be plugged into the framework to account for different communication capabilities of human users. We facilitate the use of Communication Flows within a scientific workflow by means of reusable workflow fragments implementing the interaction with the framework.
信息技术在研究和实践中的应用提高了任务的自动化程度,使科学实验在成本、速度、准确性和灵活性方面更加高效。科学工作流程已被证明对科学计算的自动化很有用。然而,并不是所有的实验任务都可以自动化。有些决定仍然需要由人类用户做出,例如,在特殊情况下,自动化系统应该如何进行。为了解决在这种自动化系统中集成人类用户的需求,我们提出了人类通信流的概念,它指定了关于科学工作流如何与人类用户交互的最佳实践。我们开发了一个人工通信框架,它在管道和过滤器架构中实现通信流,并支持通知和请求-响应交互。可以将不同的通信服务插入到框架中,以考虑人类用户的不同通信能力。通过可重用的工作流片段实现与框架的交互,我们促进了科学工作流中通信流的使用。
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引用次数: 5
Happy or not: Generating topic-based emotional heatmaps for Culturomics using CyberGIS 快乐与否:使用CyberGIS为文化组生成基于主题的情感热图
Pub Date : 2012-10-08 DOI: 10.1109/ESCIENCE.2012.6404440
Eric Shook, Kalev H. Leetaru, G. Cao, Anand Padmanabhan, Shaowen Wang
The field of Culturomics exploits “big data” to explore human society at population scale. Culturomics increasingly needs to consider geographic contexts and, thus, this research develops a geospatial visual analytical approach that transforms vast amounts of textual data into emotional heatmaps with fine-grained spatial resolution. Fulltext geocoding and sentiment mining extract locations and latent “tone” from text-based data, which are combined with spatial analysis methods - kernel density estimation and spatial interpolation - to generate heatmaps that capture the interplay of location, topic, and tone toward narrative impacts. To demonstrate the effectiveness of the approach, the complete English edition of Wikipedia is processed using a supercomputer to extract all locations and tone associated with the year of 2003. An emotional heatmap of Wikipedia's discussion of “armed conflict” for that year is created using the spatial analysis methods. Unlike previous research, our approach is designed for exploratory spatial analysis of topics in text archives by incorporating multiple attributes including the prominence of each location mentioned in the text, the density of a topic at each location compared to other topics, and the tone of the topics of interest into a single analysis. The generation of such fine-grained emotional heatmaps is computationally intensive particularly when accounting for the multiple attributes at fine scales. Therefore a CyberGIS platform based on national cyberinfrastructure in the United States is used to enable the computationally intensive visual analytics.
文化组学领域利用“大数据”在人口规模上探索人类社会。文化组学越来越需要考虑地理背景,因此,本研究开发了一种地理空间视觉分析方法,将大量文本数据转换为具有细粒度空间分辨率的情感热图。全文地理编码和情感挖掘从基于文本的数据中提取位置和潜在的“基调”,这些数据与空间分析方法(核密度估计和空间插值)相结合,生成热图,捕捉位置、主题和基调对叙事影响的相互作用。为了证明这种方法的有效性,用一台超级计算机对维基百科的完整英文版进行处理,提取出与2003年相关的所有位置和音调。使用空间分析方法创建了当年维基百科关于“武装冲突”的讨论的情感热图。与之前的研究不同,我们的方法旨在通过将多个属性(包括文本中提到的每个位置的突出性,每个位置的主题密度与其他主题相比,以及感兴趣的主题的基调)纳入单个分析,对文本档案中的主题进行探索性空间分析。生成这种细粒度的情感热图需要大量的计算,特别是在细尺度上考虑多个属性时。因此,基于美国国家网络基础设施的CyberGIS平台被用于实现计算密集型视觉分析。
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引用次数: 32
Efficient data transfer protocols for big data 面向大数据的高效数据传输协议
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404462
B. Tierney, E. Kissel, D. M. Swany, Eric Pouyoul
Data set sizes are growing exponentially, so it is important to use data movement protocols that are the most efficient available. Most data movement tools today rely on TCP over sockets, which limits flows to around 20Gbps on today's hardware. RDMA over Converged Ethernet (RoCE) is a promising new technology for high-performance network data movement with minimal CPU impact over circuit-based infrastructures. We compare the performance of TCP, UDP, UDT, and RoCE over high latency 10Gbps and 40Gbps network paths, and show that RoCE-based data transfers can fill a 40Gbps path using much less CPU than other protocols. We also show that the Linux zero-copy system calls can improve TCP performance considerably, especially on current Intel “Sandy Bridge”-based PCI Express 3.0 (Gen3) hosts.
数据集的大小呈指数级增长,因此使用最有效的数据移动协议非常重要。如今,大多数数据移动工具都依赖于套接字上的TCP,这在当今的硬件上将流量限制在20Gbps左右。RDMA基于融合以太网(RoCE)是一种很有前途的新技术,用于高性能网络数据移动,对基于电路的基础设施的CPU影响最小。我们比较了TCP、UDP、UDT和RoCE在高延迟10Gbps和40Gbps网络路径上的性能,并表明基于RoCE的数据传输可以使用比其他协议少得多的CPU来填充40Gbps路径。我们还表明,Linux零复制系统调用可以大大提高TCP性能,特别是在当前基于英特尔“Sandy Bridge”的PCI Express 3.0 (Gen3)主机上。
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引用次数: 63
Verification and user experience of high data rate bandwidth-on-demand networks 高数据速率按需带宽网络的验证与用户体验
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404460
Jimmy Cullen, R. Hughes-Jones, R. Spencer
We describe our experiences in creating multigigabit links using the GÉ ANT Bandwidth on Demand (BoD) Client Portal and report measurement and analysis of the performance of connections using both FPGA and PC based network testing tools. This research was performed as part of a work package for the EC funded NEXPReS project.
我们描述了我们使用GÉ ANT带宽按需(BoD)客户端门户创建多千兆链路的经验,并报告了使用FPGA和基于PC的网络测试工具对连接性能的测量和分析。这项研究是作为欧盟资助的NEXPReS项目工作包的一部分进行的。
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引用次数: 0
WorkWays: Interactive workflow-based science gateways 工作方式:基于交互式工作流的科学网关
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404428
H. Nguyen, D. Abramson
Workflow-based science gateways that bring the power of scientific workflows to the Web are becoming increasingly popular. Different IO models enabling interactions between a running workflow and web portal have been explored. However, these are typically not dynamic enough to allow users to insert data into, or export data out of, a continuously running workflow. In this paper, we present a novel IO model, which supports dynamic interaction between a workflow and its portal. We discuss a use case in which web portal are used to control the execution of scientific workflows. This IO model will be part of our workflow-based science gateway named WorkWays.
基于工作流的科学网关将科学工作流的强大功能引入Web,正变得越来越流行。不同的IO模型支持运行的工作流和web门户之间的交互。然而,这些通常不够动态,无法允许用户向连续运行的工作流中插入数据或从工作流中导出数据。在本文中,我们提出了一个新的IO模型,它支持工作流和门户之间的动态交互。我们讨论了一个用例,其中使用web门户来控制科学工作流的执行。这个IO模型将成为我们基于工作流的科学网关WorkWays的一部分。
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引用次数: 11
Statistical analysis and visualization services for Spatially Integrated Social Science datasets 空间集成社会科学数据集的统计分析和可视化服务
Pub Date : 2012-10-08 DOI: 10.1109/eScience.2012.6404421
Irfan Azeezullah, Friska Pambudi, Tung-Kai Shyy, Imran Azeezullah, Nigel Ward, J. Hunter, R. Stimson
The field of Spatially Integrated Social Science (SISS) recognizes that much data of interest to social scientists has an associated geographic location. SISS systems use geographic location as the basis for integrating heterogeneous social science data sets and for visualizing and analyzing the integrated results through mapping interfaces. However, sourcing data sets, aggregating data captured at different spatial scales, and implementing statistical analysis techniques over the data are highly complex and challenging steps, beyond the capabilities of many social scientists. The aim of the UQ SISS eResearch Facility (SISS-eRF) is to remove this burden from social scientists by providing a Web interface that allows researchers to quickly access relevant Australian socio-spatial datasets (e.g. census data, voting data), aggregate them spatially, conduct statistical modeling on the datasets and visualize spatial distribution patterns and statistical results. This paper describes the technical architecture and components of SISS-eRF and discusses the reasons that underpin the technological choices. It describes some case studies that demonstrate how SISS-eRF is being applied to prove hypotheses that relate particular voting patterns with socio-economic parameters (e.g., gender, age, housing, income, education, employment, religion/culture). Finally we outline our future plans for extending and deploying SISS-eRF across the Australian Social Science Community.
空间整合社会科学(SISS)领域认识到,社会科学家感兴趣的许多数据都有一个相关的地理位置。SISS系统将地理位置作为整合异构社会科学数据集的基础,并通过映射接口对整合结果进行可视化和分析。然而,寻找数据集、汇总在不同空间尺度上捕获的数据以及对数据实施统计分析技术是非常复杂和具有挑战性的步骤,超出了许多社会科学家的能力。昆士兰大学SISS电子研究设施(SISS- erf)的目的是通过提供一个网络界面,使研究人员能够快速访问相关的澳大利亚社会空间数据集(如人口普查数据、投票数据),在空间上进行汇总,对数据集进行统计建模,并将空间分布模式和统计结果可视化,从而消除社会科学家的负担。本文描述了SISS-eRF的技术体系结构和组件,并讨论了支持技术选择的原因。它描述了一些案例研究,说明如何应用ssis - erf来证明将特定投票模式与社会经济参数(例如,性别、年龄、住房、收入、教育、就业、宗教/文化)联系起来的假设。最后,我们概述了在澳大利亚社会科学界扩展和部署SISS-eRF的未来计划。
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引用次数: 0
期刊
2012 IEEE 8th International Conference on E-Science
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