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Spatially resolved transcriptomics: advances and applications. 空间解析转录组学:进展与应用。
Q3 Medicine Pub Date : 2022-11-04 eCollection Date: 2023-01-01 DOI: 10.1097/BS9.0000000000000141
Honglin Duan, Tao Cheng, Hui Cheng

Spatial transcriptomics, which is capable of both measuring all gene activity in a tissue sample and mapping where this activity occurs, is vastly improving our understanding of biological processes and disease. The field has expanded rapidly in recent years, and the development of several new technologies has resulted in spatially resolved transcriptomics (SRT) becoming highly multiplexed, high-resolution, and high-throughput. Here, we summarize and compare the major methods of SRT, including imaging-based methods, sequencing-based methods, and in situ sequencing methods. We also highlight some typical applications of SRT in neuroscience, cancer biology, developmental biology, and hematology. Finally, we discuss future possibilities for improving spatially resolved transcriptomic methods and the expected applications of such methods, especially in the adult bone marrow, anticipating that new developments will unlock the full potential of spatially resolved multi-omics in both biological research and the clinic.

空间转录组学能够测量组织样本中的所有基因活动,并绘制出这些活动发生的位置,这极大地提高了我们对生物过程和疾病的理解。近年来,该领域发展迅速,一些新技术的发展使得空间分辨转录组学(SRT)变得高度多路复用、高分辨率和高通量。在此,我们总结和比较了SRT的主要方法,包括基于成像的方法、基于测序的方法和原位测序的方法。我们还重点介绍了SRT在神经科学、癌症生物学、发育生物学和血液学方面的一些典型应用。最后,我们讨论了改进空间分辨转录组学方法的未来可能性以及这些方法的预期应用,特别是在成人骨髓中,预计新的发展将释放空间分辨多组学在生物学研究和临床中的全部潜力。
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引用次数: 1
Immune checkpoint alterations and their blockade in COVID-19 patients. COVID-19患者免疫检查点改变及其阻断
Q3 Medicine Pub Date : 2022-10-01 Epub Date: 2022-08-01 DOI: 10.1097/BS9.0000000000000132
Jiaxiong Tan, Yangqiu Li

Coronavirus disease 2019 (COVID-19) is a highly contagious disease that seriously affects people's lives. Immune dysfunction, which is characterized by abnormal expression of multiple immune checkpoint proteins (ICs) on immune cells, is associated with progression and poor prognosis for tumors and chronic infections. Immunotherapy targeting ICs has been well established in modulating immune function and improving clinical outcome for solid tumors and hematological malignancies. The role of ICs in different populations or COVID-19 stages and the impact of IC blockade remains unclear. In this review, we summarized current studies of alterations in ICs in COVID-19 to better understand immune changes and provide strategies for treating COVID-19 patients, particularly those with cancer.

2019冠状病毒病(COVID-19)是一种严重影响人们生活的高度传染性疾病。免疫功能障碍以免疫细胞上多种免疫检查点蛋白(ICs)的异常表达为特征,与肿瘤和慢性感染的进展和预后不良有关。针对肿瘤的免疫治疗在调节实体瘤和血液系统恶性肿瘤的免疫功能和改善临床预后方面已经得到了很好的证实。IC在不同人群或COVID-19阶段的作用以及IC阻断的影响尚不清楚。在这篇综述中,我们总结了目前关于COVID-19中ic改变的研究,以更好地了解免疫变化,并为治疗COVID-19患者,特别是癌症患者提供策略。
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引用次数: 2
Measurable residual disease in childhood B-cell acute lymphoblastic leukemia. 儿童b细胞急性淋巴细胞白血病可测量的残留病。
Q3 Medicine Pub Date : 2022-10-01 Epub Date: 2022-10-10 DOI: 10.1097/BS9.0000000000000112
Robert Peter Gale
In a recent report in Nature Cell Biology (2022. 24:242–52) Zhang and coworkers discuss comparative genetic and bio-chemical features of leukemia cells from children with B-cell acute lymphoblastic leukemia (ALL) obtained at diagnosis, in remission, and at relapse. 1 The authors analyzed large numbers of single-cell transcriptomes looking for dynamic changes and simultaneously, B-cell receptor sequences. They report that in contrast to leukemia cells at diagnosis, those at relapse shifted to a poorly-differentiated state. Changes in residual leukemia cells in remission were more complicated. Differential functional analyses highlighted activation of the hypoxia pathway in residual leukemia cells which correlated with drug resistance which was reversible with appropriate drug interventions in in vitro and in vivo models. The authors suggest this might be a therapy approach to eradicating measurable residual disease (MRD) in childhood B-cell ALL. This is a data dense article which requires understanding a machine learning algorithm. I suggest putting aside at least 5 hours to read and understand the text and supplement. I had to read it twice. This is not something to breeze through while texting on WeChat if you really want to understand the authors’ message and to critique it appropriately. First, a word on nomenclature. The authors use the term minimal residual disease . As John Goldman and I discussed several years ago the correct term is measurable residual disease . 2 Minimal is a subjective term; minimal to 1 person is not necessarily minimal to another. What we are considering is what can and cannot be measured in someone in complete histological remis- sion. (Another source of confusion; remissions are histological , not morphological . Morphology comes from the Greek μ&z. omicr; ρϕ which means form, structure or shape, not appear-ance). As an aside Morpheus was the Greek God of sleep and is the root of the drug name morphine. Lest you think I’m getting lost in semantics please recall the comment from George Orwell:
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引用次数: 0
Sex differences in normal and malignant hematopoiesis. 正常和恶性造血的性别差异。
Q3 Medicine Pub Date : 2022-10-01 Epub Date: 2022-08-16 DOI: 10.1097/BS9.0000000000000133
Xiaojing Cui, Xinghui Zhao, Ying Liang

Hematopoiesis is a continuous and well-regulated process requiring both the capacity for self-renewal and the potential for differentiation of hematopoietic stem cells. Multiple studies indicate that sex hormones exert significant effects on not only hematopoietic stem and progenitor cells, but also the development of hematopoietic lineages, resulting in sexual dimorphisms in normal hematopoiesis. Hematologic malignancies comprise a wide variety of cancers affecting the blood, bone marrow, and lymphatic system, such as leukemia, lymphoma, myeloma, myelodysplastic syndrome, and myeloproliferative diseases. Overall, males are at greater risk and have worse prognosis for most of these malignancies compared with females. A better understanding of the differences between male and female could be of substantial value in research as well as clinical management.

造血是一个持续的、调控良好的过程,既需要造血干细胞自我更新的能力,也需要造血干细胞分化的潜力。多项研究表明,性激素不仅对造血干细胞和祖细胞有显著影响,而且对造血世系的发育也有显著影响,导致正常造血过程中出现性别二型现象。血液恶性肿瘤包括影响血液、骨髓和淋巴系统的各种各样的癌症,如白血病、淋巴瘤、骨髓瘤、骨髓增生异常综合征和骨髓增生性疾病。总的来说,与女性相比,男性患这些恶性肿瘤的风险更大,预后也更差。更好地了解男性和女性之间的差异可能在研究和临床管理中具有重大价值。
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引用次数: 5
BCR-ABL1 is a secondary event after JAK2V617F in a patient with essential thrombocythemia who develop chronic myeloid leukemia. BCR-ABL1是JAK2V617F后原发性血小板增多症并发慢性髓性白血病患者的次要事件。
Q3 Medicine Pub Date : 2022-10-01 DOI: 10.1097/BS9.0000000000000129
Yanqing Zhang, Hailiang Bi, Ying Wang, Long Chen, Jiaqi Pan, Ping Xu, Wei Wang, Shaobin Yang

Several cases such as myeloproliferative neoplasms (MPN) with the coexistence of JAK2 and BCR-ABL have been reported. However, cases of transformation of essential thrombocythemia (ET) into chronic myeloid leukemia (CML) during the disease progression were rarely reported. Here, we report the case of a patient with JAK2 V617F- positive ET who subsequently acquired BCR-ABL1, which transformed the disease into CML after 10 years from the initial diagnosis. In this study, we dynamically monitored JAK2 V617F and BCR-ABL and observed multiple gene mutations, including IDH2, IDH1, ASXL1, KRAS, and RUNX1. It is important to be aware of this potentially clone evolution in disease progression.

一些病例如骨髓增生性肿瘤(MPN)与JAK2和BCR-ABL共存已被报道。然而,在疾病进展过程中,原发性血小板增多症(ET)转化为慢性髓性白血病(CML)的病例很少报道。在这里,我们报告了JAK2 V617F-阳性ET患者随后获得BCR-ABL1的病例,该病例在最初诊断10年后将疾病转化为CML。在本研究中,我们对JAK2 V617F和BCR-ABL进行动态监测,观察到IDH2、IDH1、ASXL1、KRAS和RUNX1等多个基因突变。重要的是要意识到这种潜在的克隆进化在疾病进展中。
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引用次数: 0
Pulmonary tuberculosis infection and CMV reactivation following daratumumab treatment in a patient with relapsed plasmablastic lymphoma. 复发性浆母细胞淋巴瘤患者达拉单抗治疗后的肺结核感染和巨细胞病毒再激活
Q3 Medicine Pub Date : 2022-10-01 DOI: 10.1097/BS9.0000000000000134
Wenyue Cao, Yuling Wan, Xingcheng Yang, Wei Huang, Jia Wei

Plasmablastic lymphoma (PBL) is an aggressive lymphoma with limited treatment strategies. Tuberculosis (TB) infection poses a high risk for patients with hematologic malignancies, especially those treated with immune agents but were never reported post-daratumumab treatment. Herein, we reported a TB infection in a 57-year-old male diagnosed with HIV-negative PBL receiving daratumumab-based treatment, who showed atypical lung infection and yielded Mycobacterium tuberculosis and cytomegalovirus (CMV) in the bronchoalveolar lavage fluid. Anti-TB therapy was administered, and the following daratumumab treatment was complete with good tolerance. In this case, we demonstrated that TB infection might occur after daratumumab therapy, and adequate attention should be paid to atypical symptoms.

浆母细胞淋巴瘤(PBL)是一种侵袭性淋巴瘤,治疗策略有限。结核病(TB)感染对血液系统恶性肿瘤患者具有很高的风险,特别是那些接受免疫药物治疗但从未报道过达拉单抗后治疗的患者。在此,我们报告了一名57岁男性被诊断为hiv阴性PBL,接受达拉图单抗治疗的结核病感染,他表现出非典型肺部感染,支气管肺泡灌洗液中产生结核分枝杆菌和巨细胞病毒(CMV)。给予抗结核治疗,随后的达拉单抗治疗完成,耐受性良好。在本例中,我们证明了达拉单抗治疗后可能发生结核感染,应充分注意非典型症状。
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引用次数: 0
A novel non-viral PDCD1 site-integrated CAR design: killing 2 birds with 1 stone. 一种新的非病毒PDCD1位点集成CAR设计:一石二鸟。
Q3 Medicine Pub Date : 2022-10-01 DOI: 10.1097/BS9.0000000000000135
Yuanbin Cui, Yunlin Huang, Le Qin, Peng Li
Although chimeric antigen receptor T-cell (CAR-T-cell) ther- apy has shown excellent efficacy against refractory/relapsed B-cell lymphoma
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引用次数: 0
Artificial intelligence and its applications in digital hematopathology. 人工智能及其在数字血液病理学中的应用。
IF 1.5 Q3 HEMATOLOGY Pub Date : 2022-07-14 eCollection Date: 2022-07-01 DOI: 10.1097/BS9.0000000000000130
Yongfei Hu, Yinglun Luo, Guangjue Tang, Yan Huang, Juanjuan Kang, Dong Wang

The advent of whole-slide imaging, faster image data generation, and cheaper forms of data storage have made it easier for pathologists to manipulate digital slide images and interpret more detailed biological processes in conjunction with clinical samples. In parallel, with continuous breakthroughs in object detection, image feature extraction, image classification and image segmentation, artificial intelligence (AI) is becoming the most beneficial technology for high-throughput analysis of image data in various biomedical imaging disciplines. Integrating digital images into biological workflows, advanced algorithms, and computer vision techniques expands the biologist's horizons beyond the microscope slide. Here, we introduce recent developments in AI applied to microscopy in hematopathology. We give an overview of its concepts and present its applications in normal or abnormal hematopoietic cells identification. We discuss how AI shows great potential to push the limits of microscopy and enhance the resolution, signal and information content of acquired data. Its shortcomings are discussed, as well as future directions for the field.

全切片成像技术的出现、更快的图像数据生成速度以及更廉价的数据存储方式,使病理学家可以更轻松地处理数字切片图像,并结合临床样本解读更详细的生物过程。与此同时,随着物体检测、图像特征提取、图像分类和图像分割技术的不断突破,人工智能(AI)正成为各生物医学成像学科对图像数据进行高通量分析的最有利技术。将数字图像融入生物工作流程、先进的算法和计算机视觉技术,拓展了生物学家在显微镜载玻片之外的视野。在此,我们将介绍应用于血液病理学显微镜的人工智能的最新发展。我们概述了其概念,并介绍了其在正常或异常造血细胞识别中的应用。我们讨论了人工智能如何在突破显微镜极限、提高所获数据的分辨率、信号和信息含量方面展现出巨大潜力。我们还讨论了其不足之处以及该领域的未来发展方向。
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引用次数: 0
Carbon dots for the treatment of cancer-related anemia. 用于治疗癌症相关贫血症的碳点。
Q3 Medicine Pub Date : 2022-07-01 DOI: 10.1097/BS9.0000000000000120
Xu Han, Peng Ji
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引用次数: 0
RNA and hematopoiesis. RNA和造血。
Q3 Medicine Pub Date : 2022-07-01 DOI: 10.1097/BS9.0000000000000128
Jia Yu
Hematopoietic stem cells (HSCs) can differentiate into all mature functional blood cells via hematopoiesis
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引用次数: 0
期刊
血液科学(英文)
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