首页 > 最新文献

Acta Pharmaceutica Sinica. B最新文献

英文 中文
Pioneering integration of combinatorial chemistry and machine learning to accelerate the development of tailored LNPs for mRNA delivery 率先将组合化学与机器学习相结合,加速开发用于 mRNA 输送的定制 LNPs
IF 14.5 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-02 DOI: 10.1016/j.apsb.2024.08.032
Xi He, Pingyu Wang, Linbo Qing, Xiangrong Song
{"title":"Pioneering integration of combinatorial chemistry and machine learning to accelerate the development of tailored LNPs for mRNA delivery","authors":"Xi He, Pingyu Wang, Linbo Qing, Xiangrong Song","doi":"10.1016/j.apsb.2024.08.032","DOIUrl":"https://doi.org/10.1016/j.apsb.2024.08.032","url":null,"abstract":"","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.5,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142263629","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DNMT3A loss drives a HIF-1-dependent synthetic lethality to HDAC6 inhibition in non-small cell lung cancer 在非小细胞肺癌中,DNMT3A 的缺失导致了对 HDAC6 抑制作用的 HIF-1 依赖性合成致死率
IF 14.5 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-02 DOI: 10.1016/j.apsb.2024.08.025
Jiayu Zhang, Yingxi Zhao, Ruijuan Liang, Xue Zhou, Zhonghua Wang, Cheng Yang, Lingyue Gao, Yonghao Zheng, Hui Shao, Yang Su, Wei Cui, Lina Jia, Jingyu Yang, Chunfu Wu, Lihui Wang
encodes a DNA methyltransferase involved in development, cell differentiation, and gene transcription, which is mutated and aberrant-expressed in cancers. Here, we revealed that loss of promotes malignant phenotypes in lung cancer. Based on the epigenetic inhibitor library synthetic lethal screening, we found that small-molecule HDAC6 inhibitors selectively killed -defective NSCLC cells. Knockdown of by siRNAs reduced cell growth and induced apoptosis in -defective NSCLC cells. However, sensitive cells became resistant when was rescued. Furthermore, the selectivity to HDAC6 inhibition was recapitulated in mice, where an HDAC6 inhibitor retarded tumor growth established from -defective but not parental NSCLC cells. Mechanistically, loss resulted in the upregulation of through decreasing its promoter CpG methylation and enhancing transcription factor RUNX1 binding. Notably, our results indicated that HIF-1 pathway was activated in -defective cells whereas inactivated by HDAC6 inhibition. Knockout of contributed to the elimination of synthetic lethality between and . Interestingly, HIF-1 pathway inhibitors could mimic the selective efficacy of HDAC6 inhibition in -defective cells. These results demonstrated as an HIF-1-dependent vulnerability of -defective cancers. Together, our findings identify as a potential HIF-1-dependent therapeutic target for the treatment of -defective cancers like NSCLC.
编码一种 DNA 甲基转移酶,参与发育、细胞分化和基因转录,在癌症中会发生突变和异常表达。在这里,我们发现该基因的缺失会促进肺癌的恶性表型。基于表观遗传抑制剂库的合成致死筛选,我们发现小分子 HDAC6 抑制剂能选择性地杀死缺失的 NSCLC 细胞。通过 siRNAs 敲除 HDAC6 抑制剂可降低细胞生长,并诱导-缺陷 NSCLC 细胞凋亡。然而,敏感细胞在被挽救后会变得耐药。此外,HDAC6抑制剂对HDAC6抑制的选择性在小鼠中得到了再现,HDAC6抑制剂能延缓由-缺陷NSCLC细胞而非亲代NSCLC细胞所形成的肿瘤生长。从机理上讲,HDAC6的缺失通过降低其启动子CpG甲基化和增强转录因子RUNX1的结合而导致其上调。值得注意的是,我们的研究结果表明,HIF-1通路在-缺陷细胞中被激活,而HDAC6抑制则使其失活。有趣的是,HIF-1 通路抑制剂可以模拟 HDAC6 抑制剂在-缺陷细胞中的选择性功效。这些结果表明,-缺陷癌症具有依赖于 HIF-1 的脆弱性。总之,我们的研究结果确定了治疗 NSCLC 等-缺陷癌症的潜在 HIF-1 依赖性治疗靶点。
{"title":"DNMT3A loss drives a HIF-1-dependent synthetic lethality to HDAC6 inhibition in non-small cell lung cancer","authors":"Jiayu Zhang, Yingxi Zhao, Ruijuan Liang, Xue Zhou, Zhonghua Wang, Cheng Yang, Lingyue Gao, Yonghao Zheng, Hui Shao, Yang Su, Wei Cui, Lina Jia, Jingyu Yang, Chunfu Wu, Lihui Wang","doi":"10.1016/j.apsb.2024.08.025","DOIUrl":"https://doi.org/10.1016/j.apsb.2024.08.025","url":null,"abstract":"encodes a DNA methyltransferase involved in development, cell differentiation, and gene transcription, which is mutated and aberrant-expressed in cancers. Here, we revealed that loss of promotes malignant phenotypes in lung cancer. Based on the epigenetic inhibitor library synthetic lethal screening, we found that small-molecule HDAC6 inhibitors selectively killed -defective NSCLC cells. Knockdown of by siRNAs reduced cell growth and induced apoptosis in -defective NSCLC cells. However, sensitive cells became resistant when was rescued. Furthermore, the selectivity to HDAC6 inhibition was recapitulated in mice, where an HDAC6 inhibitor retarded tumor growth established from -defective but not parental NSCLC cells. Mechanistically, loss resulted in the upregulation of through decreasing its promoter CpG methylation and enhancing transcription factor RUNX1 binding. Notably, our results indicated that HIF-1 pathway was activated in -defective cells whereas inactivated by HDAC6 inhibition. Knockout of contributed to the elimination of synthetic lethality between and . Interestingly, HIF-1 pathway inhibitors could mimic the selective efficacy of HDAC6 inhibition in -defective cells. These results demonstrated as an HIF-1-dependent vulnerability of -defective cancers. Together, our findings identify as a potential HIF-1-dependent therapeutic target for the treatment of -defective cancers like NSCLC.","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.5,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142263632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
PEGylated bacteria restore intestinal mucosal barrier 聚乙二醇化细菌可恢复肠粘膜屏障
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.06.016
{"title":"PEGylated bacteria restore intestinal mucosal barrier","authors":"","doi":"10.1016/j.apsb.2024.06.016","DOIUrl":"10.1016/j.apsb.2024.06.016","url":null,"abstract":"","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524002478/pdfft?md5=130431e0f2a42187fbe7170aa9d6a7c8&pid=1-s2.0-S2211383524002478-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141552761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recent advances to address challenges in extracellular vesicle-based applications for lung cancer 应对基于细胞外囊泡的肺癌应用挑战的最新进展
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.06.010

Lung cancer, highly prevalent and the leading cause of cancer-related death globally, persists as a significant challenge due to the lack of definitive tumor markers for early diagnosis and personalized therapeutic interventions. Recently, extracellular vesicles (EVs), functioning as natural carriers for intercellular communication, have received increasing attention due to their ability to traverse biological barriers and deliver diverse biological cargoes, including cytosolic proteins, cell surface proteins, microRNA, lncRNA, circRNA, DNA, and lipids. EVs are increasingly recognized as a valuable resource for non-invasive liquid biopsy, as well as drug delivery platforms, and anticancer vaccines for precision medicine in lung cancer. Herein, given the diagnostic and therapeutic potential of tumor-associated EVs for lung cancer, we discuss this topic from a translational standpoint. We delve into the specific roles that EVs play in lung cancer carcinogenesis and offer a particular perspective on how advanced engineering technologies can overcome the current challenges and expedite and/or enhance the translation of EVs from laboratory research to clinical settings.

肺癌发病率很高,是全球癌症相关死亡的主要原因,但由于缺乏明确的肿瘤标志物来进行早期诊断和个性化治疗干预,肺癌一直是一项重大挑战。最近,细胞外囊泡(EVs)作为细胞间通信的天然载体,因其穿越生物屏障并运送多种生物货物(包括细胞膜蛋白、细胞表面蛋白、microRNA、lncRNA、circRNA、DNA 和脂质)的能力而受到越来越多的关注。人们日益认识到,EVs 是无创液体活检的宝贵资源,也是肺癌精准医疗的药物递送平台和抗癌疫苗。鉴于肿瘤相关 EVs 在肺癌诊断和治疗方面的潜力,我们在此从转化的角度讨论这一话题。我们深入探讨了 EVs 在肺癌发生过程中的具体作用,并从一个特别的角度探讨了先进的工程技术如何克服当前的挑战,加快和/或加强 EVs 从实验室研究到临床的转化。
{"title":"Recent advances to address challenges in extracellular vesicle-based applications for lung cancer","authors":"","doi":"10.1016/j.apsb.2024.06.010","DOIUrl":"10.1016/j.apsb.2024.06.010","url":null,"abstract":"<div><p>Lung cancer, highly prevalent and the leading cause of cancer-related death globally, persists as a significant challenge due to the lack of definitive tumor markers for early diagnosis and personalized therapeutic interventions. Recently, extracellular vesicles (EVs), functioning as natural carriers for intercellular communication, have received increasing attention due to their ability to traverse biological barriers and deliver diverse biological cargoes, including cytosolic proteins, cell surface proteins, microRNA, lncRNA, circRNA, DNA, and lipids. EVs are increasingly recognized as a valuable resource for non-invasive liquid biopsy, as well as drug delivery platforms, and anticancer vaccines for precision medicine in lung cancer. Herein, given the diagnostic and therapeutic potential of tumor-associated EVs for lung cancer, we discuss this topic from a translational standpoint. We delve into the specific roles that EVs play in lung cancer carcinogenesis and offer a particular perspective on how advanced engineering technologies can overcome the current challenges and expedite and/or enhance the translation of EVs from laboratory research to clinical settings.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524002417/pdfft?md5=468026f3f5b8e835e25e1109c77b0c75&pid=1-s2.0-S2211383524002417-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141528649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In situ tumor vaccine with optimized nanoadjuvants and lymph node targeting capacity to treat ovarian cancer and metastases 具有优化纳米佐剂和淋巴结靶向能力的原位肿瘤疫苗治疗卵巢癌和转移瘤
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.06.003

Tumor vaccine, a promising modality of tumor immunotherapy, needs to go through the process of tumor antigen generation and loading, antigen drainage to lymph nodes (LNs), antigen internalization by dendritic cells (DCs), DC maturation, and antigen cross-presentation to activate T-cells. However, tumor vaccines are often unable to satisfy all the steps, leading to the limitation of their application and efficacy. Herein, based on a smart nanogel system, an in situ nano-vaccine (CpG@Man-P/Tra/Gel) targeting LNs was constructed to induce potent anti-tumor immune effects and inhibit the recurrence and metastasis of ovarian cancer. The CpG@Man-P/Tra/Gel exhibited MMP-2-sensitive release of trametinib (Tra) and nano-adjuvant CPG@Man-P, which generated abundant in situ depot of whole-cell tumor antigens and formed in situ nano-vaccines with CpG@Man-P. Benefiting from mannose (Man) modification, the nano-vaccines targeted to LNs, promoted the uptake of antigens by DCs, further inducing the maturation of DCs and activation of T cells. Moreover, CpG@Man-P with different particle sizes were prepared and the effective size was selected to evaluate the antitumor effect and immune response in vivo. Notably, combined with PD-1 blocking, the vaccine effectively inhibited primary tumor growth and induced tumor-specific immune response against tumor recurrence and metastasis of ovarian cancer.

肿瘤疫苗作为一种前景广阔的肿瘤免疫治疗方式,需要经过肿瘤抗原的产生和装载、抗原引流至淋巴结(LN)、抗原被树突状细胞(DC)内化、DC成熟以及抗原交叉呈递激活T细胞等过程。然而,肿瘤疫苗往往无法满足所有步骤,导致其应用和疗效受到限制。本文基于智能纳米凝胶系统,构建了一种以LNs为靶点的原位纳米疫苗(CpG@Man-P/Tra/Gel),以诱导有效的抗肿瘤免疫效应,抑制卵巢癌的复发和转移。CpG@Man-P/Tra/Gel具有MMP-2敏感性,可释放曲美替尼(Tra)和纳米辅助CPG@Man-P,产生丰富的全细胞肿瘤抗原原位库,与CpG@Man-P形成原位纳米疫苗。通过甘露糖(Man)修饰,纳米疫苗靶向LN,促进DC对抗原的吸收,进一步诱导DC的成熟和T细胞的活化。此外,还制备了不同粒径的CpG@Man-P,并选择有效粒径评估其体内抗肿瘤效果和免疫反应。值得注意的是,该疫苗与 PD-1 阻断相结合,能有效抑制原发性肿瘤的生长,并诱导肿瘤特异性免疫反应,防止卵巢癌的复发和转移。
{"title":"In situ tumor vaccine with optimized nanoadjuvants and lymph node targeting capacity to treat ovarian cancer and metastases","authors":"","doi":"10.1016/j.apsb.2024.06.003","DOIUrl":"10.1016/j.apsb.2024.06.003","url":null,"abstract":"<div><p>Tumor vaccine, a promising modality of tumor immunotherapy, needs to go through the process of tumor antigen generation and loading, antigen drainage to lymph nodes (LNs), antigen internalization by dendritic cells (DCs), DC maturation, and antigen cross-presentation to activate T-cells. However, tumor vaccines are often unable to satisfy all the steps, leading to the limitation of their application and efficacy. Herein, based on a smart nanogel system, an <em>in situ</em> nano-vaccine (CpG@Man-P/Tra/Gel) targeting LNs was constructed to induce potent anti-tumor immune effects and inhibit the recurrence and metastasis of ovarian cancer. The CpG@Man-P/Tra/Gel exhibited MMP-2-sensitive release of trametinib (Tra) and nano-adjuvant CPG@Man-P, which generated abundant <em>in situ</em> depot of whole-cell tumor antigens and formed <em>in situ</em> nano-vaccines with CpG@Man-P. Benefiting from mannose (Man) modification, the nano-vaccines targeted to LNs, promoted the uptake of antigens by DCs, further inducing the maturation of DCs and activation of T cells. Moreover, CpG@Man-P with different particle sizes were prepared and the effective size was selected to evaluate the antitumor effect and immune response <em>in vivo</em>. Notably, combined with PD-1 blocking, the vaccine effectively inhibited primary tumor growth and induced tumor-specific immune response against tumor recurrence and metastasis of ovarian cancer.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S221138352400234X/pdfft?md5=a0678c7e67c933b10332cc576fc2373e&pid=1-s2.0-S221138352400234X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141413006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Glycodiversification of gentamicins through in vivo glycosyltransferase swapping enabled the creation of novel hybrid aminoglycoside antibiotics with potent activity and low ototoxicity 通过体内糖基转移酶交换实现庆大霉素的糖基化,从而创造出具有强效活性和低耳毒性的新型混合氨基糖苷类抗生素
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.04.030

Aminoglycosides (AGs) are a class of antibiotics with a broad spectrum of activity. However, their use is limited by safety concerns associated with nephrotoxicity and ototoxicity, as well as drug resistance. To address these issues, semi-synthetic approaches for modifying natural AGs have generated new generations of AGs, however, with limited types of modification due to significant challenges in synthesis. This study explores a novel approach that harness the bacterial biosynthetic machinery of gentamicins and kanamycins to create hybrid AGs. This was achieved by glycodiversification of gentamicins via swapping the glycosyltransferase (GT) in their producer with the GT from kanamycins biosynthetic pathway and resulted in the creation of a series of novel AGs, therefore referred to as genkamicins (GKs). The manipulation of the hybrid biosynthetic pathway enabled the targeted accumulation of different GK species and the isolation and characterization of six GK components. These compounds display retained antimicrobial activity against a panel of World Health Organization (WHO) critical priority pathogens, and GK-C2a, in particular, demonstrates low ototoxicity compared to clinical drugs in zebrafish embryos. This study provides a new strategy for diversifying the structure of AGs and a potential avenue for developing less toxic AG drugs to combat infectious diseases.

氨基糖苷类(AGs)是一类具有广谱活性的抗生素。然而,由于与肾毒性和耳毒性相关的安全性问题以及耐药性,它们的使用受到了限制。为了解决这些问题,对天然 AGs 进行修饰的半合成方法产生了新一代 AGs,但由于合成方面的巨大挑战,修饰类型有限。本研究探索了一种新方法,即利用庆大霉素和卡那霉素的细菌生物合成机制来制造杂交 AGs。这是通过将庆大霉素生产者中的糖基转移酶(GT)与卡那霉素生物合成途径中的糖基转移酶(GT)进行糖基化来实现的,结果产生了一系列新型 AGs,因此被称为基因激肽(GKs)。通过对混合代谢途径的操作,成功地积累了不同种类的 GK,并分离和鉴定了六种 GK 成分。这些化合物对世界卫生组织(WHO)关键优先病原体的抗菌活性保持不变,尤其是 GK-C2a,与斑马鱼胚胎中的临床药物相比,具有较低的耳毒性。这项研究为AGs结构的多样化提供了一种新策略,也为开发毒性较低的AG药物防治传染病提供了一条潜在的途径。
{"title":"Glycodiversification of gentamicins through in vivo glycosyltransferase swapping enabled the creation of novel hybrid aminoglycoside antibiotics with potent activity and low ototoxicity","authors":"","doi":"10.1016/j.apsb.2024.04.030","DOIUrl":"10.1016/j.apsb.2024.04.030","url":null,"abstract":"<div><p>Aminoglycosides (AGs) are a class of antibiotics with a broad spectrum of activity. However, their use is limited by safety concerns associated with nephrotoxicity and ototoxicity, as well as drug resistance. To address these issues, semi-synthetic approaches for modifying natural AGs have generated new generations of AGs, however, with limited types of modification due to significant challenges in synthesis. This study explores a novel approach that harness the bacterial biosynthetic machinery of gentamicins and kanamycins to create hybrid AGs. This was achieved by glycodiversification of gentamicins <em>via</em> swapping the glycosyltransferase (GT) in their producer with the GT from kanamycins biosynthetic pathway and resulted in the creation of a series of novel AGs, therefore referred to as genkamicins (GKs). The manipulation of the hybrid biosynthetic pathway enabled the targeted accumulation of different GK species and the isolation and characterization of six GK components. These compounds display retained antimicrobial activity against a panel of World Health Organization (WHO) critical priority pathogens, and GK-C2a, in particular, demonstrates low ototoxicity compared to clinical drugs in zebrafish embryos. This study provides a new strategy for diversifying the structure of AGs and a potential avenue for developing less toxic AG drugs to combat infectious diseases.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524001710/pdfft?md5=61529e2e095077621230da69bf47f420&pid=1-s2.0-S2211383524001710-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140938640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of novel small-molecule inhibitors of SARS-CoV-2 by chemical genetics 通过化学遗传学鉴定新型 SARS-CoV-2 小分子抑制剂
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.05.026

There are only eight approved small molecule antiviral drugs for treating COVID-19. Among them, four are nucleotide analogues (remdesivir, JT001, molnupiravir, and azvudine), while the other four are protease inhibitors (nirmatrelvir, ensitrelvir, leritrelvir, and simnotrelvir-ritonavir). Antiviral resistance, unfavourable drug‒drug interaction, and toxicity have been reported in previous studies. Thus there is a dearth of new treatment options for SARS-CoV-2. In this work, a three-tier cell-based screening was employed to identify novel compounds with anti-SARS-CoV-2 activity. One compound, designated 172, demonstrated broad-spectrum antiviral activity against multiple human pathogenic coronaviruses and different SARS-CoV-2 variants of concern. Mechanistic studies validated by reverse genetics showed that compound 172 inhibits the 3-chymotrypsin-like protease (3CLpro) by binding to an allosteric site and reduces 3CLpro dimerization. A drug synergistic checkerboard assay demonstrated that compound 172 can achieve drug synergy with nirmatrelvir in vitro. In vivo studies confirmed the antiviral activity of compound 172 in both Golden Syrian Hamsters and K18 humanized ACE2 mice. Overall, this study identified an alternative druggable site on the SARS-CoV-2 3CLpro, proposed a potential combination therapy with nirmatrelvir to reduce the risk of antiviral resistance and shed light on the development of allosteric protease inhibitors for treating a range of coronavirus diseases.

目前仅有八种获准用于治疗 COVID-19 的小分子抗病毒药物。其中四种是核苷酸类似物(remdesivir、JT001、molnupiravir 和阿兹夫定),另外四种是蛋白酶抑制剂(nirmatrelvir、ensitrelvir、leritrelvir 和 simnotrelvir-ritonavir)。以前的研究曾报道过抗病毒耐药性、不利的药物相互作用和毒性。因此,SARS-CoV-2 缺乏新的治疗方案。在这项工作中,采用了基于细胞的三层筛选,以确定具有抗 SARS-CoV-2 活性的新型化合物。其中一种化合物被命名为 ,对多种人类致病冠状病毒和不同的 SARS-CoV-2 变异株具有广谱抗病毒活性。通过反向遗传学验证的机理研究表明,该化合物通过与异构位点结合抑制 3-糜蛋白酶样蛋白酶(3CLpro),并减少 3CLpro 的二聚化。药物协同作用棋盘试验表明,该化合物能与 nirmatrelvir 产生药物协同作用。研究证实了该化合物在金色叙利亚仓鼠和 K18 人源化 ACE2 小鼠中的抗病毒活性。总之,这项研究发现了 SARS-CoV-2 3CLpro 上的另一个可用药位点,提出了一种潜在的与 nirmatrelvir 联合治疗的方法,以降低抗病毒耐药性的风险,并为开发治疗各种冠状病毒疾病的异位蛋白酶抑制剂提供了启示。
{"title":"Identification of novel small-molecule inhibitors of SARS-CoV-2 by chemical genetics","authors":"","doi":"10.1016/j.apsb.2024.05.026","DOIUrl":"10.1016/j.apsb.2024.05.026","url":null,"abstract":"<div><p>There are only eight approved small molecule antiviral drugs for treating COVID-19. Among them, four are nucleotide analogues (remdesivir, JT001, molnupiravir, and azvudine), while the other four are protease inhibitors (nirmatrelvir, ensitrelvir, leritrelvir, and simnotrelvir-ritonavir). Antiviral resistance, unfavourable drug‒drug interaction, and toxicity have been reported in previous studies. Thus there is a dearth of new treatment options for SARS-CoV-2. In this work, a three-tier cell-based screening was employed to identify novel compounds with anti-SARS-CoV-2 activity. One compound, designated <strong>172</strong>, demonstrated broad-spectrum antiviral activity against multiple human pathogenic coronaviruses and different SARS-CoV-2 variants of concern. Mechanistic studies validated by reverse genetics showed that compound <strong>172</strong> inhibits the 3-chymotrypsin-like protease (3CLpro) by binding to an allosteric site and reduces 3CLpro dimerization. A drug synergistic checkerboard assay demonstrated that compound <strong>172</strong> can achieve drug synergy with nirmatrelvir <em>in vitro</em>. <em>In vivo</em> studies confirmed the antiviral activity of compound <strong>172</strong> in both Golden Syrian Hamsters and K18 humanized ACE2 mice. Overall, this study identified an alternative druggable site on the SARS-CoV-2 3CLpro, proposed a potential combination therapy with nirmatrelvir to reduce the risk of antiviral resistance and shed light on the development of allosteric protease inhibitors for treating a range of coronavirus diseases.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524002193/pdfft?md5=245cd59fcf5f588064c9386d2c790d47&pid=1-s2.0-S2211383524002193-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141528597","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Establishing cell suitability for high-level production of licorice triterpenoids in yeast 在酵母中建立高水平甘草三萜类化合物生产的细胞适宜性
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.04.032

Yeast has been an indispensable host for synthesizing complex plant-derived natural compounds, yet the yields remained largely constrained. This limitation mainly arises from overlooking the importance of cell and pathway suitability during the optimization of enzymes and pathways. Herein, beyond conventional enzyme engineering, we dissected metabolic suitability with a framework for simultaneously augmenting cofactors and carbon flux to enhance the biosynthesis of heterogenous triterpenoids. We further developed phospholipid microenvironment engineering strategies, dramatically improving yeast's suitability for the high performance of endoplasmic reticulum (ER)-localized, rate-limiting plant P450s. Combining metabolic and microenvironment suitability by manipulating only three genes, NHMGR (NADH-dependent HMG-CoA reductase), SIP4 (a DNA-binding transcription factor)and GPP1 (Glycerol-1-phosphate phosphohydrolase 1), we enabled the high-level production of 4.92 g/L rare licorice triterpenoids derived from consecutive oxidation of β-amyrin by two P450 enzymes after fermentation optimization. This production holds substantial commercial value, highlighting the critical role of establishing cell suitability in enhancing triterpenoid biosynthesis and offering a versatile framework applicable to various plant natural product biosynthetic pathways.

酵母一直是合成复杂植物天然化合物不可或缺的宿主,但其产量在很大程度上仍然受到限制。这种限制主要是由于在优化酶和途径的过程中忽视了细胞和途径适宜性的重要性。在本文中,除了传统的酶工程,我们还利用同时增加辅助因子和碳通量的框架来剖析代谢适宜性,以提高异源三萜类化合物的生物合成。我们进一步开发了磷脂微环境工程策略,极大地改善了酵母的适用性,使其能够高效地生产内质网(ER)定位的、限制速率的植物 P450s。通过仅操纵三个基因,即 NHMGR(NADH 依赖性 HMG-CoA 还原酶)、SIP4(DNA 结合转录因子)和 GPP1(甘油-1-磷酸磷酸水解酶 1),我们结合了新陈代谢和微环境的适宜性,在发酵优化后实现了 4.92 克/升稀有甘草三萜类化合物的高水平生产,这些三萜类化合物来自两种 P450 酶对β-amyrin 的连续氧化。这种生产具有巨大的商业价值,突出了建立细胞适宜性在提高三萜类生物合成中的关键作用,并提供了适用于各种植物天然产物生物合成途径的通用框架。
{"title":"Establishing cell suitability for high-level production of licorice triterpenoids in yeast","authors":"","doi":"10.1016/j.apsb.2024.04.032","DOIUrl":"10.1016/j.apsb.2024.04.032","url":null,"abstract":"<div><p>Yeast has been an indispensable host for synthesizing complex plant-derived natural compounds, yet the yields remained largely constrained. This limitation mainly arises from overlooking the importance of cell and pathway suitability during the optimization of enzymes and pathways. Herein, beyond conventional enzyme engineering, we dissected metabolic suitability with a framework for simultaneously augmenting cofactors and carbon flux to enhance the biosynthesis of heterogenous triterpenoids. We further developed phospholipid microenvironment engineering strategies, dramatically improving yeast's suitability for the high performance of endoplasmic reticulum (ER)-localized, rate-limiting plant P450s. Combining metabolic and microenvironment suitability by manipulating only three genes, <em>NHMGR</em> (NADH-dependent HMG-CoA reductase), <em>SIP4</em> (a DNA-binding transcription factor)and <em>GPP1</em> (Glycerol-1-phosphate phosphohydrolase 1), we enabled the high-level production of 4.92 g/L rare licorice triterpenoids derived from consecutive oxidation of <em>β</em>-amyrin by two P450 enzymes after fermentation optimization. This production holds substantial commercial value, highlighting the critical role of establishing cell suitability in enhancing triterpenoid biosynthesis and offering a versatile framework applicable to various plant natural product biosynthetic pathways.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524001746/pdfft?md5=8e23b04b400ea0396e81f7613810df44&pid=1-s2.0-S2211383524001746-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141058489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beyond ribosomal function: RPS6 deficiency suppresses cholangiocarcinoma cell growth by disrupting alternative splicing 超越核糖体功能:缺乏 RPS6 会破坏替代剪接,从而抑制胆管癌细胞的生长
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.06.028

Cholangiocarcinoma (CCA) is a bile duct malignancy with a dismal prognosis. This study systematically investigated the role of the ribosomal protein S6 (RPS6) gene, which is dependent in CCA. We found that RPS6 upregulation in CCA tissues was correlated with a poor prognosis. Functional investigations have shown that alterations in RPS6 expression, both gain- and loss-of function could affect the proliferation of CCA cells. In xenograft tumor models, RPS6 overexpression enhances tumorigenicity, whereas RPS6 silencing reduces it. Integration analysis using RNA-seq and proteomics elucidated downstream signaling pathways of RPS6 depletion by affecting the cell cycle, especially DNA replication. Immunoprecipitation followed by mass spectrometry has identified numerous spliceosome complex proteins associated with RPS6. Transcriptomic profiling revealed that RPS6 affects numerous alternative splicing (AS) events, and combined with RNA immunoprecipitation sequencing, revealed that minichromosome maintenance complex component 7 (MCM7) binds to RPS6, which regulates its AS and increases oncogenic activity in CCA. Targeting RPS6 with vivo phosphorodiamidate morpholino oligomer (V-PMO) significantly inhibited the growth of CCA cells, patient-derived organoids, and subcutaneous xenograft tumor. Taken together, the data demonstrate that RPS6 is an oncogenic regulator in CCA and that RPS6-V-PMO could be repositioned as a promising strategy for treating CCA.

胆管癌(CCA)是一种预后不良的胆管恶性肿瘤。本研究系统研究了核糖体蛋白 S6()基因在 CCA 中的作用。我们发现,RPS6 在 CCA 组织中的上调与不良预后相关。功能研究表明,RPS6表达的改变,包括功能增益和丧失,都会影响CCA细胞的增殖。在异种移植肿瘤模型中,RPS6 的过表达会增强致瘤性,而 RPS6 的沉默则会降低致瘤性。通过RNA-seq和蛋白质组学的整合分析,阐明了RPS6缺失影响细胞周期,尤其是DNA复制的下游信号通路。通过免疫沉淀和质谱分析发现了许多与 RPS6 相关的剪接体复合蛋白。转录组分析表明,RPS6 影响许多替代剪接(AS)事件,结合 RNA 免疫沉淀测序,发现迷你染色体维护复合体成分 7()与 RPS6 结合,从而调节其 AS 并增加 CCA 的致癌活性。用体内磷酸二亚氨基吗啉寡聚体(V-PMO)靶向 RPS6 能显著抑制 CCA 细胞、患者衍生的器官组织和皮下异种移植瘤的生长。综上所述,这些数据表明 RPS6 是 CCA 的致癌调节因子,RPS6-V-PMO 可被重新定位为治疗 CCA 的一种有前途的策略。
{"title":"Beyond ribosomal function: RPS6 deficiency suppresses cholangiocarcinoma cell growth by disrupting alternative splicing","authors":"","doi":"10.1016/j.apsb.2024.06.028","DOIUrl":"10.1016/j.apsb.2024.06.028","url":null,"abstract":"<div><p>Cholangiocarcinoma (CCA) is a bile duct malignancy with a dismal prognosis. This study systematically investigated the role of the ribosomal protein S6 (<em>RPS6</em>) gene, which is dependent in CCA. We found that RPS6 upregulation in CCA tissues was correlated with a poor prognosis. Functional investigations have shown that alterations in RPS6 expression, both gain- and loss-of function could affect the proliferation of CCA cells. In xenograft tumor models, RPS6 overexpression enhances tumorigenicity, whereas RPS6 silencing reduces it. Integration analysis using RNA-seq and proteomics elucidated downstream signaling pathways of RPS6 depletion by affecting the cell cycle, especially DNA replication. Immunoprecipitation followed by mass spectrometry has identified numerous spliceosome complex proteins associated with RPS6. Transcriptomic profiling revealed that RPS6 affects numerous alternative splicing (AS) events, and combined with RNA immunoprecipitation sequencing, revealed that minichromosome maintenance complex component 7 (<em>MCM7</em>) binds to RPS6, which regulates its AS and increases oncogenic activity in CCA. Targeting RPS6 with vivo phosphorodiamidate morpholino oligomer (V-PMO) significantly inhibited the growth of CCA cells, patient-derived organoids, and subcutaneous xenograft tumor. Taken together, the data demonstrate that RPS6 is an oncogenic regulator in CCA and that RPS6-V-PMO could be repositioned as a promising strategy for treating CCA.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524002582/pdfft?md5=2d5d55fdd7409b7b5a66b2184e1a6093&pid=1-s2.0-S2211383524002582-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141549272","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular glue triggers degradation of PHGDH by enhancing the interaction between DDB1 and PHGDH 分子胶通过增强 DDB1 和 PHGDH 之间的相互作用引发 PHGDH 降解
IF 14.7 1区 医学 Q1 PHARMACOLOGY & PHARMACY Pub Date : 2024-09-01 DOI: 10.1016/j.apsb.2024.06.001

Cancer stem cells (CSCs) play a pivotal role in tumor initiation, proliferation, metastasis, drug resistance, and recurrence. Consequently, targeting CSCs has emerged as a promising avenue for cancer therapy. Recently, 3-phosphoglycerate dehydrogenase (PHGDH) has been identified as being intricately associated with the regulation of numerous cancer stem cells. Yet, reports detailing the functional regulators of PHGDH that can mitigate the stemness across cancer types are limited. In this study, the novel “molecular glue” LXH-3-71 was identified, and it robustly induced degradation of PHGDH, thereby modulating the stemness of colorectal cancer cells (CRCs) both in vitro and in vivo. Remarkably, LXH-3-71 was observed to form a dynamic chimera, between PHGDH and the DDB1-CRL E3 ligase. These insights not only elucidate the anti-CSCs mechanism of the lead compound but also suggest that degradation of PHGDH may be a more viable therapeutic strategy than the development of PHGDH inhibitors. Additionally, compound LXH-3-71 was leveraged as a novel ligand for the DDB1-CRL E3 ligase, facilitating the development of new PROTAC molecules targeting EGFR and CDK4 degradation.

癌症干细胞(CSCs)在肿瘤的发生、增殖、转移、耐药性和复发中起着举足轻重的作用。因此,以癌症干细胞为靶点已成为一种前景广阔的癌症治疗方法。最近,人们发现3-磷酸甘油酸脱氢酶(PHGDH)与许多癌症干细胞的调控密切相关。然而,有关PHGDH的功能调控因子可减轻不同癌症类型干细胞的详细报道却很有限。本研究发现了新型 "分子胶水 "LXH-3-71,它能强力诱导PHGDH降解,从而在体外和体内调节结直肠癌细胞(CRC)的干性。值得注意的是,在 PHGDH 和 DDB1-CRL E3 连接酶之间观察到 LXH-3-71 形成了一个动态嵌合体。这些发现不仅阐明了该先导化合物的抗造血干细胞机制,还表明降解 PHGDH 可能是比开发 PHGDH 抑制剂更可行的治疗策略。此外,化合物LXH-3-71被用作DDB1-CRL E3连接酶的新型配体,促进了靶向表皮生长因子受体(EGFR)和CDK4降解的新型PROTAC分子的开发。
{"title":"Molecular glue triggers degradation of PHGDH by enhancing the interaction between DDB1 and PHGDH","authors":"","doi":"10.1016/j.apsb.2024.06.001","DOIUrl":"10.1016/j.apsb.2024.06.001","url":null,"abstract":"<div><p>Cancer stem cells (CSCs) play a pivotal role in tumor initiation, proliferation, metastasis, drug resistance, and recurrence. Consequently, targeting CSCs has emerged as a promising avenue for cancer therapy. Recently, 3-phosphoglycerate dehydrogenase (PHGDH) has been identified as being intricately associated with the regulation of numerous cancer stem cells. Yet, reports detailing the functional regulators of PHGDH that can mitigate the stemness across cancer types are limited. In this study, the novel “molecular glue” LXH-3-71 was identified, and it robustly induced degradation of PHGDH, thereby modulating the stemness of colorectal cancer cells (CRCs) both <em>in vitro</em> and <em>in vivo</em>. Remarkably, LXH-3-71 was observed to form a dynamic chimera, between PHGDH and the DDB1-CRL E3 ligase. These insights not only elucidate the anti-CSCs mechanism of the lead compound but also suggest that degradation of PHGDH may be a more viable therapeutic strategy than the development of PHGDH inhibitors. Additionally, compound LXH-3-71 was leveraged as a novel ligand for the DDB1-CRL E3 ligase, facilitating the development of new PROTAC molecules targeting EGFR and CDK4 degradation.</p></div>","PeriodicalId":6906,"journal":{"name":"Acta Pharmaceutica Sinica. B","volume":null,"pages":null},"PeriodicalIF":14.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2211383524002326/pdfft?md5=b3ff21986e576e18d54ba16a83d40e06&pid=1-s2.0-S2211383524002326-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141414127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Acta Pharmaceutica Sinica. B
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1