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Fast Track Treatment of Hypothyroidism with Levothyroxine: Reaching Homeostasis within Four Weeks 左旋甲状腺素快速治疗甲状腺功能减退:在四周内达到体内平衡
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-03-07 DOI: 10.1007/s10441-023-09461-x
Simon L. Goede

With the current clinical method for the treatment of hypothyroidism the target for the optimum individual values for free thyroxine concentrations [FT4] and thyrotropine concentrations [TSH] of the specific patient are unknown. This situation leads to unnecessary long experimental medication administration that can take a period of sometimes one year. In this article a method will be described where hypothyroid patients are characterized with weekly measured FT4 and TSH concentrations during the first three weeks of synthetic thyroxine or levothyroxine (L-T4) treatment to predict their optimum [FT4] and belonging [TSH] endpoint for a euthyroid homeostatic state. The treatment with levothyroxine will start for all patients with a reference dose of 100 µg, which can be adjusted by the treating physician to a more safe and appropriate dose for the individual which is monitored with weekly thyroid function tests to observe the progress. After three weeks all characteristics of the patient can be inferred from the measured data. The final titration target together with the individual thyroxine half life can be calculated. With the known characteristics and the L-T4 titration target the clinician or treating physician has an instrument to reduce the experimental treatment burden for the patient from one year to a maximum of four weeks.

在目前治疗甲状腺功能减退的临床方法中,特定患者游离甲状腺素浓度[FT4]和促甲状腺素浓度[TSH]的最佳个体值的目标是未知的。这种情况导致不必要的长期实验性药物管理,有时需要一年的时间。在本文中,我们将描述一种方法,在合成甲状腺素或左旋甲状腺素(L-T4)治疗的前三周,通过每周测量FT4和TSH浓度来预测他们的最佳[FT4]和属于[TSH]终点,以达到甲状腺平衡状态。所有患者将以100µg的参考剂量开始左旋甲状腺素治疗,治疗医生可将其调整为对个体更安全、更合适的剂量,并通过每周一次的甲状腺功能检查监测病情进展。三周后,可以从测量数据推断出患者的所有特征。可以计算出最终的滴定目标和个体甲状腺素的半衰期。有了已知的特征和L-T4滴定目标,临床医生或治疗医生就有了一种工具,可以将患者的实验性治疗负担从一年减少到最多四周。
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引用次数: 0
Mathematical Model of COVID-19 Pandemic with Double Dose Vaccination 双剂量疫苗下COVID-19大流行的数学模型
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-03-06 DOI: 10.1007/s10441-023-09460-y
Olumuyiwa James Peter, Hasan S. Panigoro, Afeez Abidemi, Mayowa M. Ojo, Festus Abiodun Oguntolu

This paper is concerned with the formulation and analysis of an epidemic model of COVID-19 governed by an eight-dimensional system of ordinary differential equations, by taking into account the first dose and the second dose of vaccinated individuals in the population. The developed model is analyzed and the threshold quantity known as the control reproduction number (mathcal {R}_{0}) is obtained. We investigate the equilibrium stability of the system, and the COVID-free equilibrium is said to be locally asymptotically stable when the control reproduction number is less than unity, and unstable otherwise. Using the least-squares method, the model is calibrated based on the cumulative number of COVID-19 reported cases and available information about the mass vaccine administration in Malaysia between the 24th of February 2021 and February 2022. Following the model fitting and estimation of the parameter values, a global sensitivity analysis was performed by using the Partial Rank Correlation Coefficient (PRCC) to determine the most influential parameters on the threshold quantities. The result shows that the effective transmission rate ((alpha )), the rate of first vaccine dose ((phi )), the second dose vaccination rate ((sigma )) and the recovery rate due to the second dose of vaccination ((eta )) are the most influential of all the model parameters. We further investigate the impact of these parameters by performing a numerical simulation on the developed COVID-19 model. The result of the study shows that adhering to the preventive measures has a huge impact on reducing the spread of the disease in the population. Particularly, an increase in both the first and second dose vaccination rates reduces the number of infected individuals, thus reducing the disease burden in the population.

本文考虑人群中接种疫苗个体的第一剂和第二剂,建立了由八维常微分方程组控制的COVID-19流行模型。对所建立的模型进行了分析,并得到了称为控制再现数(mathcal {R}_{0})的阈值。我们研究了系统的平衡稳定性,当控制复制数小于1时,无covid平衡是局部渐近稳定的,否则是不稳定的。该模型使用最小二乘法,根据2021年2月24日至2022年2月24日期间马来西亚报告的COVID-19累计病例数和有关大规模疫苗接种的现有信息进行校准。在模型拟合和参数值估计之后,利用偏秩相关系数(PRCC)进行全局敏感性分析,确定对阈值量影响最大的参数。结果表明,有效传播率((alpha ))、第一次疫苗接种率((phi ))、第二次疫苗接种率((sigma ))和第二次疫苗接种率((eta ))是所有模型参数中影响最大的。我们通过对开发的COVID-19模型进行数值模拟,进一步研究了这些参数的影响。研究结果表明,坚持预防措施对减少疾病在人群中的传播有巨大的影响。特别是,第一剂和第二剂疫苗接种率的增加减少了受感染的人数,从而减少了人口中的疾病负担。
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引用次数: 17
A Very Nice Meal with an Unsatisfying Appetizer 一顿非常美味的饭,开胃菜却不令人满意
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-03-03 DOI: 10.1007/s10441-023-09458-6
Antonella Tramacere

As an Italian from the South, I have been socialized to care a lot about cooking. Quality of the food is a fundamental starting point for a successful result; in addition, you need expertise in food preparation and the capacity to balance dishes together in a single meal, from appetizer to dessert.

I find Isabella Sarto-Jackson’s book The Making and Breaking of Mind a very nice meal with good-quality food prepared with expert hands, but the dish balance is a bit unsatisfying. I find dishes not always coherently combined with the general style of the meal, starting with the appetizer. A good appetizer would tell you what you should expect from the overall meal and would make you crave for tasting the rest. Instead, the book’s introduction and the first chapter seem to promise something different and does not give you a satisfactory idea of what you will read later. This is a pity, because overall the meal is quite nice, and most of the dishes delicious.

作为一个来自南方的意大利人,我已经习惯了非常关心烹饪。食品的质量是成功的根本出发点;此外,你还需要在食物准备方面的专业知识,以及在一顿饭中平衡各种菜肴的能力,从开胃菜到甜点。我觉得伊莎贝拉·萨托-杰克逊(Isabella Sarto-Jackson)的书《心灵的形成与破碎》(The Making and Breaking of Mind)是一顿非常不错的饭,食物质量上乘,由专家亲手准备,但菜品的平衡有点令人不满意。我发现,从开胃菜开始,菜肴并不总是与菜肴的总体风格相一致。一份好的开胃菜会告诉你整顿饭应该吃些什么,并让你渴望品尝剩下的东西。相反,这本书的引言和第一章似乎承诺了一些不同的东西,并没有给你一个令人满意的想法,你将阅读之后。这是一个遗憾,因为总的来说这顿饭还不错,而且大多数菜都很好吃。
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引用次数: 0
Heuristics Facilitates the Evolution of Transitive Inference and Social Hierarchy in a Large Group 启发式促进了大群体传递推理和社会等级的进化
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-03-03 DOI: 10.1007/s10441-023-09459-5
Kazuto Doi, Mayuko Nakamaru

Transitive inference (TI) refers to social cognition that facilitates the discernment of unknown relationships between individuals using known relationships. It is extensively reported that TI evolves in animals living in a large group because TI could assess relative rank without deducing all dyadic relationships, which averts costly fights. The relationships in a large group become so complex that social cognition may not be developed adequately to handle such complexity. If members apply TI to all possible members in the group, TI requires extremely highly developed cognitive abilities especially in a large group. Instead of developing cognitive abilities significantly, animals may apply simplified TI we call reference TI in this study as heuristic approaches. The reference TI allows members to recognize and remember social interactions only among a set of reference members rather than all potential members. Our study assumes that information processes in the reference TI comprises (1) the number of reference members based on which individuals infer transitively, (2) the number of reference members shared by the same strategists, and (3) memory capacity. We examined how information processes evolve in a large group using evolutionary simulations in the hawk–dove game. Information processes with almost any numbers of reference members could evolve in a large group as long as the numbers of shared reference member are high because information from the others’ experiences is shared. TI dominates immediate inference, which assesses relative rank on direct interactions, because TI could establish social hierarchy more rapidly applying information from others’ experiences.

传递推理(TI)是一种社会认知,它有助于利用已知关系识别个体之间的未知关系。据广泛报道,TI在生活在大群体中的动物中进化,因为TI可以在不推断所有双元关系的情况下评估相对等级,从而避免代价高昂的战斗。一个大群体中的关系变得如此复杂,以至于社会认知可能没有得到充分发展来处理这种复杂性。如果成员将TI应用于团队中所有可能的成员,那么TI对认知能力的要求就非常高,尤其是在一个大的团队中。而不是显著发展认知能力,动物可能应用简化的TI,我们称之为参考TI作为启发式方法在本研究中。参考TI允许成员只识别和记住一组参考成员之间的社会互动,而不是所有潜在成员。我们的研究假设参考TI中的信息处理包括(1)个体基于传递性推断的参考成员的数量,(2)相同策略共享的参考成员的数量,以及(3)记忆容量。我们研究了信息处理过程是如何在一个大群体中进化的,使用了鹰鸽博弈中的进化模拟。在一个大的群体中,只要共享的参考成员数量多,几乎任何数量的参考成员的信息处理都可以进化,因为来自其他人经验的信息是共享的。TI主导了即时推理,它在直接互动中评估相对等级,因为TI可以更快速地利用他人经验中的信息建立社会等级。
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引用次数: 2
The Multi-Causal Basis of Developmental Potential Construction 发展潜能构建的多因基础
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-30 DOI: 10.1007/s10441-023-09456-8
Davide Vecchi, Gil Santos

In this article we analyse the issue of what accounts for developmental potential, i.e., the possible phenotypes a developing organism can manifest during ontogeny. We shall argue in favour of two theses. First, although the developing organism is the unit of development, the complete causal basis for its potential to develop does neither lie entirely in itself as a whole nor in any specific part of itself (such as its genome). Thus, the extra-organismal environment must be counted as one of the three necessary, partial and complementary causal bases for development potential. Secondly, we shall defend a constructivist view of the developmental process. If the genome, the developing organism and the extra-organismal environment are to be counted as proper elements of the causal basis for an organism’s developmental potential, the latter is not a given. Rather, it is the result of an interaction-based construction, a process sometimes generating genuine developmental novelty. We will thus argue for an interactionist multi-causal basis view of developmental potential construction. We contend that our view provides a biologically tenable and metaphysically coherent account of developmental dynamics.

在这篇文章中,我们分析了什么解释了发育潜力的问题,也就是说,一个发育中的有机体在个体发育过程中可能表现出的表型。我们将辩论赞成两个提纲。首先,尽管发育中的有机体是发育的单位,但其发育潜力的完整因果基础既不完全在于其整体,也不在于其任何特定部分(如其基因组)。因此,有机体外环境必须被视为发展潜力的三个必要的、部分的和互补的因果基础之一。其次,我们要捍卫发展过程的建构主义观点。如果基因组、发育中的生物体和生物体外环境被视为生物体发育潜力的因果基础的适当元素,那么后者不是给定的。相反,它是基于互动的构建的结果,这个过程有时会产生真正的发展新颖性。因此,我们将论证发展潜力构建的互动主义多因果基础观点。我们认为,我们的观点提供了一种生物学上站得住脚的、形而上学上连贯的发育动力学解释。
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引用次数: 1
The Connection of the Generalized Robinson–Foulds Metric with Partial Wiener Indices 广义Robinson-Foulds度量与部分Wiener指标的联系
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2023-01-25 DOI: 10.1007/s10441-023-09457-7
Damir Vukičević, Domagoj Matijević

In this work we propose the partial Wiener index as one possible measure of branching in phylogenetic evolutionary trees. We establish the connection between the generalized Robinson–Foulds (RF) metric for measuring the similarity of phylogenetic trees and partial Wiener indices by expressing the number of conflicting pairs of edges in the generalized RF metric in terms of partial Wiener indices. To do so we compute the minimum and maximum value of the partial Wiener index (Wleft(T,r, nright)), where (T) is a binary rooted tree with root (r) and (n) leaves. Moreover, under the Yule probabilistic model, we show how to compute the expected value of (Wleft(T,r, nright)). As a direct consequence, we give exact formulas for the upper bound and the expected number of conflicting pairs. By doing so we provide a better theoretical understanding of the computational complexity of the generalized RF metric.

在这项工作中,我们提出了部分维纳指数作为一个可能的测量分支在系统发育进化树。通过用部分Wiener指数来表示广义Robinson-Foulds (RF)度量中冲突边对的个数,建立了测量系统发育树相似性的广义Robinson-Foulds (RF)度量与部分Wiener指数之间的联系。为此,我们计算部分Wiener索引(Wleft(T,r, nright))的最小值和最大值,其中(T)是根叶子(r)和(n)的二叉根树。此外,在Yule概率模型下,我们展示了如何计算(Wleft(T,r, nright))的期望值。作为直接结果,我们给出了冲突对的上界和期望数目的精确公式。通过这样做,我们对广义射频度量的计算复杂性提供了更好的理论理解。
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引用次数: 0
Model of Morphogenesis with Repelling Signaling 具有排斥信号的形态发生模型
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-12-20 DOI: 10.1007/s10441-022-09454-2
A. Minarsky, S. Krymsky, C. Soulé, N. Morozova

The paper is devoted to a conceptual model of cell patterning, based on a generalized notion of the epigenetic code of a cell determining its state. We introduce the concept of signaling depending both upon the spatial distance between cells and the distance between their cell states (s-distance); signaling can repel cells in the space of cell states (s-space) or attract them. The influence of different types of repelling signaling on the evolution of cells is considered. Stabilizing signaling, namely a signaling monotonically decreasing with s-distance, causes the restoring of cell states after perturbations; destabilizing signaling, i.e., the one in which the signaling monotonically increases with s-distance, causes the appearance of pairs of cells with alternating cell states (one close to the state conventionally called “head”, and another close to the “tail” state). Non-monotonic (in s-space) signaling splits the cells into groups. The model shows that different types of signaling may provide different types of cellular patterns. General principles for applying this model to complex cellular structures are discussed.

本文致力于细胞模式的概念模型,基于细胞决定其状态的表观遗传密码的广义概念。我们引入了信号的概念,这取决于细胞之间的空间距离和细胞状态之间的距离(s-distance);信号可以在细胞状态空间(s空间)中排斥细胞或吸引细胞。考虑了不同类型的排斥信号对细胞进化的影响。稳定信号,即信号随s距离单调递减,使扰动后细胞状态恢复;不稳定信号,即信号随s距离单调增加的信号,导致细胞成对出现,细胞状态交替(一个接近通常称为“头”的状态,另一个接近“尾”状态)。非单调(在s空间)信号将细胞分成组。该模型表明,不同类型的信号可能提供不同类型的细胞模式。讨论了将该模型应用于复杂细胞结构的一般原理。
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引用次数: 0
Correction to: Stem Cells and the Microenvironment: Reciprocity with Asymmetry in Regenerative Medicine 修正:干细胞和微环境:再生医学中的互惠与不对称
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-12-09 DOI: 10.1007/s10441-022-09455-1
Guglielmo Militello, Marta Bertolaso
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引用次数: 0
Modelling the Effect of Vaccination Program and Inter-state Travel in the Spread of COVID-19 in Malaysia 模拟疫苗接种计划和州际旅行对COVID-19在马来西亚传播的影响
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-11-17 DOI: 10.1007/s10441-022-09453-3
Muhamad Hifzhudin Noor Aziz, Ahmad Dzulhilmi Ahmad Safaruddin, Nor Aishah Hamzah, Siti Suzlin Supadi, Zhou Yuhao, Muhamad Afiq Aziz

A modified version of the SEIR model with the effects of vaccination and inter-state movement is proposed to simulate the spread of COVID-19 in Malaysia. A mathematical analysis of the proposed model was performed to derive the basic reproduction number. To enhance the model’s forecasting capabilities, the model parameters were estimated using the Nelder–Mead simplex method by fitting the model outputs to the observed data. Our results showed a good fit between the model outputs and available data, where the model was then able to perform short-term predictions. In line with the rapid vaccination program, our model predicted that the COVID-19 cases in the country would decrease by the end of August. Furthermore, our findings indicated that relaxing travel restrictions from a highly vaccinated region to a low vaccinated region would result in an epidemic outbreak.

提出了一种带有疫苗接种和州际流动影响的SEIR模型的修改版本,以模拟COVID-19在马来西亚的传播。对所提出的模型进行了数学分析,得出了基本再现数。为了提高模型的预测能力,通过将模型输出与观测数据拟合,采用Nelder-Mead单纯形法估计模型参数。我们的结果表明,模型输出和可用数据之间的拟合很好,因此模型能够进行短期预测。根据快速疫苗接种计划,我们的模型预测,到8月底,该国的COVID-19病例将减少。此外,我们的研究结果表明,从高疫苗接种地区到低疫苗接种地区放松旅行限制将导致疫情爆发。
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引用次数: 0
Infectious Disease Spreading Fought by Multiple Vaccines Having a Prescribed Time Effect 具有规定时间效应的多种疫苗对抗传染病传播
IF 1.3 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Pub Date : 2022-11-15 DOI: 10.1007/s10441-022-09452-4
Rinaldo M. Colombo, Mauro Garavello

We propose a framework for the description of the effects of vaccinations on the spreading of an epidemic disease. Different vaccines can be dosed, each providing different immunization times and immunization levels. Differences due to individuals’ ages are accounted for through the introduction of either a continuous age structure or a discrete set of age classes. Extensions to gender differences or to distinguish fragile individuals can also be considered. Within this setting, vaccination strategies can be simulated, tested and compared, as is explicitly described through numerical integrations.

我们提出了一个描述疫苗接种对流行病传播影响的框架。可以使用不同的疫苗,每种疫苗提供不同的免疫时间和免疫水平。通过引入连续的年龄结构或离散的年龄类别来解释个体年龄的差异。还可以考虑将其扩展到性别差异或区分脆弱个体。在这种情况下,疫苗接种策略可以通过数值积分进行模拟、测试和比较。
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引用次数: 2
期刊
Acta Biotheoretica
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