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Antimicrobial resistance among indicator Enterococcus faecium and Escherichia coli in Swedish pig farms. 瑞典养猪场指标性粪肠球菌和大肠杆菌的抗菌药耐药性。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-17 DOI: 10.1186/s13028-024-00756-8
Valeriia Ladyhina, Susanna Sternberg-Lewerin, Linus Andersson, Elisabeth Rajala

Monitoring the use of antimicrobials and the emergence of resistance in animals and people is important for the control of antimicrobial resistance, and for establishing sustainable and effective disease management practices. In this study, we used Enterococcus spp. and Escherichia coli as indicator species to investigate antimicrobial susceptibility patterns and how these change over time, on ten Swedish pig farms. Indoor environmental sock sampling was performed once a month during the entire production cycle of one batch of pigs on each farm, resulting in 60 samples collected in total. Selective culture for E. coli and Enterococcus spp. resulted in 122 isolates of E. coli, 74 isolates of E. faecium, but no isolates of E. faecalis. Microdilution was used to determine minimum inhibitory concentrations for twelve antimicrobial substances in E. coli and fifteen substances in E. faecium. The overall prevalence of resistance was low. Among the E. coli isolates, the proportions non-wild type (resistant, NWT) isolates were as follows: azithromycin and amikacin 1% (n = 1), trimethoprim and sulfamethoxazole 2% (n = 3), ampicillin 6% (n = 7) and tetracycline 9% (n = 11). Among the E. faecium isolates, the NWT proportions were: teicoplanin, linezolid and gentamicin 1% (n = 1), daptomycin 3% (n = 2), erythromycin 26% (n = 19), tetracycline 27% (n = 20), quinupristin/dalfopristin 58% (n = 42). The resistance patterns differed between the farms, likely due to different antimicrobial use, biosecurity measures and source of the animals. The NWT prevalence among E. coli decreased over time, whereas no similar trend could be observed in E. faecium. The results of the current study illustrate the complex factors affecting the antimicrobial resistance patterns observed on each farm, indicating that specific practices and risk factors have an impact on the prevalence and type of antimicrobial resistance. Further studies of the farm environments in combination with antimicrobial use and other risk factor data are needed to elucidate the multifaceted drivers of antimicrobial resistance development on livestock farms.

监测抗菌素的使用情况以及动物和人体内抗药性的出现对于控制抗菌素抗药性以及建立可持续和有效的疾病管理方法非常重要。在这项研究中,我们使用肠球菌属和大肠杆菌作为指标物种,调查了瑞典十家养猪场的抗菌药敏感性模式及其随时间的变化情况。在每个养猪场的一批猪的整个生产周期中,每月进行一次室内环境袜子采样,总共采集了 60 份样本。对大肠杆菌和肠球菌属进行选择性培养,结果发现了 122 个大肠杆菌分离物、74 个粪肠球菌分离物,但没有粪肠球菌分离物。使用微量稀释法测定了 12 种抗菌物质对大肠杆菌和 15 种物质对粪肠球菌的最小抑菌浓度。耐药性的总体流行率较低。在大肠杆菌分离物中,非野生型(耐药,NWT)分离物的比例如下:阿奇霉素和阿米卡星 1%(n = 1)、三甲双胍和磺胺甲噁唑 2%(n = 3)、氨苄西林 6%(n = 7)和四环素 9%(n = 11)。在粪肠球菌分离物中,新威特的比例为:替考拉宁、利奈唑胺和庆大霉素 1%(n = 1),达托霉素 3%(n = 2),红霉素 26%(n = 19),四环素 27%(n = 20),喹诺酮/多福霉素 58%(n = 42)。不同养殖场的抗药性模式各不相同,这可能是由于抗菌药物的使用、生物安全措施和动物来源不同造成的。随着时间的推移,大肠杆菌的耐药率有所下降,而粪大肠杆菌的耐药率却没有类似的趋势。目前的研究结果表明,影响各养殖场抗菌素耐药性模式的因素十分复杂,表明特定的实践和风险因素对抗菌素耐药性的流行和类型有影响。需要结合抗菌素使用情况和其他风险因素数据对农场环境进行进一步研究,以阐明畜牧场抗菌素耐药性产生的多方面驱动因素。
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引用次数: 0
Cow-calf contact: a single-herd observational study of AMS yield during the first 100 days in milk. 奶牛与小牛的接触:对产奶头 100 天内 AMS 产量的单群观察研究。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-17 DOI: 10.1186/s13028-024-00757-7
Henrik Hanssen, Hanne Amundsen, Julie Føske Johnsen

An increasing number of dairy farmers plan to implement cow-calf contact (CCC) in their herd which necessitates descriptions of the cows` performance in different systems. The aim of the study was to describe (1) Automatic milking system (AMS) milk yield of cows in a CCC system during the first 100 days in milk (DIM) and (2) AMS milk yield before and after cow-calf separation. In a prospective study at a commercial Norwegian dairy farm, we included all calvings from Norwegian Red cows between January 2019 to April 2020. After calving, cow-calf pairs stayed in an individual calving pen during the first 5-6 d before they were moved to the loose housing unit with the remaining herd. Calves had whole-day (24 h/d) and full physical contact to the cows. Cows were milked in an AMS. From 14 individual cows of which one cow calved twice during the study period, we collected daily AMS yields from 15 different lactations, with parities ranging from 1 (n = 6), 2 (n = 5) and 3 (n = 4). Due to the sample size and structure of the data set, we only calculated descriptive statistics from DIM 7-100. All data is shown separately for primiparous and multiparous cows. Mean (± SD) calf age at (fence-line) separation was 52 d ± 14.8 beyond which suckling was prevented. Our data indicates great individual variation in the AMS milk yield. Prior to separation, primiparous cows` AMS yields ranged from 11.0 to 25.9 kg/d while that of multiparous cows ranged from 4.8 to 28.8 kg/d. Once calves were no longer allowed to suckle, the yield increased gradually. During the week after separation, AMS yields ranged from 17.3 to 30.4 kg/d for primiparous cows and 8.7 to 41.8 kg/d for multiparous cows and these yields increased in DIM 93-100 (26.5 to 34.3 and 20.6 to 38.3 kg/d respectively). This study is limited by a low sample size from a single-herd but may provide useful descriptions of AMS milk yield in a whole-day, full contact CCC system during the first 100 days of lactation.

越来越多的奶牛场主计划在他们的牛群中实施牛犊接触(CCC),这就需要对奶牛在不同系统中的表现进行描述。这项研究的目的是描述:(1)在CCC系统中,奶牛在最初100天(DIM)内的全自动挤奶系统(AMS)产奶量;(2)牛-犊分离前后的全自动挤奶系统产奶量。在挪威一家商业化奶牛场进行的一项前瞻性研究中,我们纳入了2019年1月至2020年4月期间挪威红奶牛的所有产犊情况。产犊后,母牛和小牛在最初的5-6天内呆在一个单独的产犊栏中,然后将它们转移到与其余牛群一起的散居单元中。犊牛全天(24 h/d)与奶牛有充分的身体接触。奶牛在自动挤奶系统中挤奶。我们从 14 头奶牛(其中一头在研究期间产了两次犊牛)中收集了 15 个不同泌乳期的 AMS 日产量,这些奶牛的泌乳次数分别为 1 次(6 头)、2 次(5 头)和 3 次(4 头)。由于数据集的样本量和结构,我们只计算了 DIM 7-100 的描述性统计。初产母牛和多产母牛的所有数据分开显示。犊牛(围栏线)分离时的平均(± SD)年龄为 52 d ± 14.8,超过这一年龄就不能哺乳。我们的数据表明,AMS产奶量的个体差异很大。分离前,初产母牛的AMS产奶量从11.0到25.9 kg/d不等,而多产母牛的AMS产奶量从4.8到28.8 kg/d不等。一旦犊牛不再哺乳,产量就会逐渐增加。在分离后的一周内,初产母牛的AMS产量为17.3至30.4千克/天,多产母牛的AMS产量为8.7至41.8千克/天,这些产量在DIM 93至100期间有所增加(分别为26.5至34.3千克/天和20.6至38.3千克/天)。这项研究因来自单个牛群的样本量较少而受到限制,但可对泌乳期前 100 天内全天候、全接触式 CCC 系统的 AMS 产奶量提供有用的描述。
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引用次数: 0
Foodborne pathogenic bacteria in wild European hedgehogs (Erinaceus europaeus). 欧洲野生刺猬(Erinaceus europaeus)中的食源性致病菌。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-15 DOI: 10.1186/s13028-024-00747-9
Maria Fredriksson-Ahomaa, Venla Johansson, Viivi Heljanko, Elina Nuotio, Heini Nihtilä, Annamari Heikinheimo, Rauni Kivistö

Background: European hedgehogs (Erinaceus europaeus) are widely distributed across Europe. They may play an important role by spreading zoonotic bacteria in the environment and to humans and animals. The aim of our work was to study the prevalence and characteristics of the most important foodborne bacterial pathogens in wild hedgehogs.

Results: Faecal samples from 148 hospitalised wild hedgehogs originating from the Helsinki region in southern Finland were studied. Foodborne pathogens were detected in 60% of the hedgehogs by PCR. Listeria (26%) and STEC (26%) were the most common foodborne pathogens. Salmonella, Yersinia, and Campylobacter were detected in 18%, 16%, and 7% of hedgehogs, respectively. Salmonella and Yersinia were highly susceptible to the tested antimicrobials. Salmonella Enteritidis and Listeria monocytogenes 2a were the most common types found in hedgehogs. All S. Enteritidis belonged to one sequence type (ST11), forming four clusters of closely related isolates. L. monocytogenes was genetically more diverse than Salmonella, belonging to 11 STs. C. jejuni ST45 and ST677, Y. pseudotuberculosis O:1 of ST9 and ST42, and Y. enterocolitica O:9 of ST139 were also found.

Conclusions: Our study shows that wild European hedgehogs should be considered an important source of foodborne pathogens, and appropriate hygiene measures after any contact with hedgehogs and strict biosecurity around farms are therefore important.

背景:欧洲刺猬(Erinaceus europaeus)广泛分布于欧洲各地。它们可能会在环境中向人类和动物传播人畜共患病细菌,从而发挥重要作用。我们的工作旨在研究最重要的食源性细菌病原体在野生刺猬中的流行情况和特征:研究了来自芬兰南部赫尔辛基地区的 148 只住院野生刺猬的粪便样本。通过 PCR 检测,60% 的刺猬体内检出了食源性病原体。李斯特菌(26%)和 STEC(26%)是最常见的食源性病原体。在 18%、16% 和 7% 的刺猬中分别检测到沙门氏菌、耶尔森氏菌和弯曲杆菌。沙门氏菌和耶尔森氏菌对测试的抗菌药高度敏感。肠炎沙门氏菌和单核细胞增生李斯特菌 2a 是刺猬中最常见的菌种。所有肠炎沙门氏菌都属于一种序列类型(ST11),形成了四个密切相关的分离物群。单核细胞增多性嗜酸乳杆菌的基因比沙门氏菌更多样化,属于 11 个 ST。此外,还发现了空肠肠杆菌 ST45 和 ST677、假结核杆菌 ST9 和 ST42 的 O:1 以及小肠结肠炎病毒 ST139 的 O:9:我们的研究表明,欧洲野生刺猬应被视为食源性病原体的重要来源,因此在与刺猬接触后采取适当的卫生措施以及在养殖场周围实施严格的生物安全措施非常重要。
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引用次数: 0
Sow dimensions and loose-housed farrowing pen sizes on commercial piglet-producing farms in Sweden. 瑞典商业仔猪生产农场的母猪体型和散栏式产仔围栏面积。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-12 DOI: 10.1186/s13028-024-00750-0
Linda Marie Backeman Hannius, Emelie Endrésen, Helena Carlzén, Anna Wallenbeck, Rebecka Westin

International interest in loose-housed farrowing is growing and there are ongoing discussions within the European Union (EU) on new legal requirements. However, there is a lack of empirical data on loose-housed farrowing pen sizes and sow dimensions in commercial production. The aim of this study was to map and describe sow size and loose-housing farrowing pen size on commercial piglet-producing farms in Sweden. The study included 146 sows and 51 pen types on 35 medium sized to large Swedish piglet-producing farms (ranging from 106 to 1300 sows in production). Sow length ranged from 129 to 238 cm (mean ± SD 191.3 ± 19.3 cm) and sow height from 74 to 133 cm (86.7 ± 7.7 cm). Floor space occupied by the sow when lying down (length x height) ranged from 1.0 to 3.2 m2 (1.7 ± 0.3 m2). Pen length ranged from 259 to 415 cm (315.1 ± 24.3 cm), pen width from 188 to 245 cm (207.0 ± 10.7 cm), total pen area from 5.7 to 8.9 m2 (6.5 ± 0.5 m2), piglet corner area from 0.5 to 1.8 m2 (1.1 ± 0.4 m2) and area available for the sow (total area - piglet corner area) from 3.9 to 6.4 m2 (5.4 ± 0.6 m2). These results show that there is substantial variation in sow, pen and piglet corner size on commercial piglet-producing farms in Sweden. This poses a risk of mismatches between sow and pen size (pens too short in relation to sow dimensions), especially for older sows. These findings are of practical significance for animal welfare and production and emphasise the importance of designing loose-housed pens adapted to future sow, litter and piglet size.

国际上对散栏式产仔的关注与日俱增,欧盟(EU)内部也正在讨论新的法律要求。然而,在商业化生产中,缺乏有关散栏式产仔围栏尺寸和母猪体型的经验数据。本研究旨在绘制和描述瑞典商业仔猪生产猪场的母猪体型和散栏式产仔栏尺寸。研究对象包括瑞典 35 个中型到大型仔猪生产猪场(生产母猪数量从 106 头到 1300 头不等)的 146 头母猪和 51 种产仔栏。母猪体长从 129 厘米到 238 厘米不等(平均 ± SD 191.3 ± 19.3 厘米),母猪身高从 74 厘米到 133 厘米不等(86.7 ± 7.7 厘米)。母猪躺卧时占用的地面空间(长 x 高)为 1.0 至 3.2 平方米(1.7 ± 0.3 平方米)。猪栏长度从 259 厘米到 415 厘米(315.1 ± 24.3 厘米)不等,猪栏宽度从 188 厘米到 245 厘米(207.0 ± 10.7 厘米)不等,猪栏总面积从 5.7 平方米到 8.9 平方米(6.5 ± 0.5 平方米)不等,仔猪角落面积从 0.5 平方米到 1.8 平方米(1.1 ± 0.4 平方米)不等,母猪可用面积(总面积 - 仔猪角落面积)从 3.9 平方米到 6.4 平方米(5.4 ± 0.6 平方米)不等。这些结果表明,瑞典商业仔猪生产猪场的母猪、栏舍和仔猪角面积差异很大。这就造成了母猪和栏舍尺寸不匹配的风险(相对于母猪的尺寸,栏舍太短),尤其是对于年龄较大的母猪。这些发现对动物福利和生产具有实际意义,并强调了根据未来母猪、产仔数和仔猪大小设计散栏式猪舍的重要性。
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引用次数: 0
Effect of surgery on oxidative stress and endogenous tocopherol concentrations in juvenile female dogs 手术对幼年雌犬氧化应激和内源性生育酚浓度的影响
IF 2.1 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-11 DOI: 10.1186/s13028-024-00753-x
Giovanna Lucrezia Costa, Fabio Leonardi, Patrizia Licata, Marco Tabbì, Nicola Iannelli, Diego Iannelli, Daniele Macrì, Fabio Bruno, Vincenzo Ferrantelli, Vincenzo Nava, Claudia Interlandi, Giuseppe Bruschetta
Surgery such as ovariectomy causes an inflammatory and oxidative stress. This study was designed to evaluate endogenous tocopherol levels in response to surgical oxidative stress induced by abdominal surgery (ovariectomy) in thirty-two juvenile female dogs. The dogs received meloxicam before surgery (0.2 mg/kg SC) and after surgery (0.1 mg/kg OS every 24 h), 0.03 mg/kg of atropine sulfate (IM), and propofol 4 mg/kg intravenously (IV). General anesthesia was maintained with sevoflurane. Physiological, hematological and biochemical parameters, malondialdehyde (MDA) and α-, δ-, γ-tocopherols were evaluated at baseline, 36 and 48 h after surgery. The physiological parameters remained within normal ranges. Blood glucose concentration increased, while the albumin levels decreased after surgery. Rescue analgesia was not required. MDA levels increased above the baseline at 36 and 48 h after surgery (P < 0.001). The α-, δ-, and γ-tocopherol concentrations decreased from baseline at 36 and 48 h after surgery (P < 0.001). Surgery in juvenile female dogs revealed oxidative, increased MDA concentrations, reduced tocopherol levels, and had a clinically insignificant influence on homeostasis.
卵巢切除术等手术会导致炎症和氧化应激。本研究旨在评估 32 只幼年雌性犬对腹部手术(卵巢切除术)引起的手术氧化应激的内源性生育酚水平。这些狗在手术前(0.2 毫克/千克 SC)和手术后(0.1 毫克/千克 OS,每 24 小时一次)接受美洛昔康、0.03 毫克/千克硫酸阿托品(IM)和 4 毫克/千克丙泊酚静脉注射(IV)。七氟醚维持全身麻醉。在基线、术后 36 和 48 小时分别对生理、血液和生化指标、丙二醛(MDA)和 α-、δ-、γ-生育酚进行了评估。生理参数保持在正常范围内。术后血糖浓度升高,而白蛋白水平下降。术后无需镇痛。术后 36 和 48 小时,MDA 水平高于基线(P < 0.001)。术后 36 和 48 小时,α-、δ- 和 γ-生育酚浓度从基线下降(P < 0.001)。对幼年雌性犬进行手术会导致氧化、MDA 浓度升高、生育酚水平降低,而且对体内平衡的影响在临床上并不明显。
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引用次数: 0
Investigation, management and control of a maedi outbreak in Norway in 2019-2020. 2019-2020 年挪威马埃迪疫情的调查、管理和控制。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-04 DOI: 10.1186/s13028-024-00749-7
Grim Rømo, Johan Åkerstedt, Anne Bang Nordstoga, Anniken Jerre Borge, Helene Wisløff, Britt Gjerset, Siv Klevar, Mette Valheim, Irene Skei Mjømen, Elisabeth Schei-Berg, Synnøve Vatn, Annette Hegermann Kampen

Background: Visna-maedi is a notifiable disease in Norway, and eliminating the disease is a national goal. The import of sheep into Norway is very limited, and strict regulations apply to the movement of small ruminants between flocks and within defined geographical regions. Several outbreaks have occurred in the last 50 years, and the most recent before 2019 occurred in Trøndelag county in Central Norway in 2002. A national surveillance programme for small ruminant lentivirus infection exists since 2003.

Results: In 2019, the national surveillance programme detected seropositive animals for small ruminant lentivirus in a sheep flock in Trøndelag. Based on the result of polymerase chain reaction analysis and histopathological findings, the Norwegian Food Safety Authority concluded the diagnosis of maedi. Further investigations detected maedi in eight additional sheep flocks in the same county. The flocks were placed under restrictions, and the authorities also imposed restrictions on 82 contact flocks. Sequencing of partial gag genes indicated that the virus in the current outbreak was related to the small ruminant lentivirus detected in the same area between 2002 and 2005.

Conclusions: The outbreak investigation shows the need for sensitive and specific diagnostic methods, and an improved and more targeted surveillance strategy. It also demonstrates the risk of disease spreading between flocks through animal movements, and highlights the importance of biosecurity and structured livestock trade. In addition to allowing livestock trade only from flocks documented free from maedi, it may be necessary to monitor sheep flocks over many years, when aiming to eliminate maedi from the Norwegian sheep population.

背景:Visna-maedi 在挪威是一种应呈报的疾病,消灭这种疾病是挪威的一项国家目标。挪威的绵羊进口量非常有限,而且对羊群之间和特定地理区域内小型反刍动物的移动有严格的规定。在过去的50年中,曾爆发过几次疫情,最近一次是在2019年之前,于2002年在挪威中部的特伦德拉格县爆发。自 2003 年起,挪威开始实施小反刍兽疫慢病毒感染国家监测计划:2019 年,国家监测计划在特伦德拉格县的一个羊群中检测到小反刍慢病毒血清阳性动物。根据聚合酶链反应分析结果和组织病理学检查结果,挪威食品安全局做出了马埃迪诊断结论。进一步的调查在同一郡的另外八个羊群中发现了马埃迪病毒。这些羊群受到限制,当局还对 82 个接触羊群实施了限制。对部分诨名基因的测序表明,本次疫情中的病毒与 2002 年至 2005 年期间在同一地区检测到的小反刍兽疫慢病毒有关:此次疫情调查表明,有必要采用灵敏、特异的诊断方法,并改进监测策略,使其更具针对性。疫情调查还表明了疾病通过动物流动在畜群之间传播的风险,并强调了生物安全和有序牲畜贸易的重要性。除了只允许来自无马埃迪病记录的羊群的牲畜进行贸易外,可能还有必要对羊群进行多年监测,以消除挪威羊群中的马埃迪病。
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引用次数: 0
Congenital syndromic Chiari-like malformation (CSCM) in Holstein cattle: towards unravelling of possible genetic causes. 荷斯坦牛先天性综合症恰里样畸形 (CSCM):揭示可能的遗传原因。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-04 DOI: 10.1186/s13028-024-00752-y
Joana Goncalves Pontes Jacinto, Anna Letko, Irene Monika Häfliger, Cord Drögemüller, Jørgen Steen Agerholm

Background: Chiari malformation type II (CMII) was originally reported in humans as a rare disorder characterized by the downward herniation of the hindbrain and towering cerebellum. The congenital brain malformation is usually accompanied by spina bifida, a congenital spinal anomaly resulting from incomplete closure of the dorsal aspect of the spinal neural tube, and occasionally by other lesions. A similar disorder has been reported in several animal species, including cattle, particularly as a congenital syndrome. A cause of congenital syndromic Chiari-like malformation (CSCM) in cattle has not been reported to date. We collected a series of 14 CSCM-affected Holstein calves (13 purebred, one Red Danish Dairy F1 cross) and performed whole-genome sequencing (WGS). WGS was performed on 33 cattle, including eight cases with parents (trio-based; group 1), three cases with one parent (group 2), and three single cases (solo-based; group 3).

Results: Sequencing-based genome-wide association study of the 13 Holstein calves with CSCM and 166 controls revealed no significantly associated genome region. Assuming a single Holstein breed-specific recessive allele, no region of shared homozygosity was detected suggesting heterogeneity. Subsequent filtering for protein-changing variants that were only homozygous in the genomes of the individual cases allowed the identification of two missense variants affecting different genes, SHC4 in case 4 in group 1 and WDR45B in case 13 in group 3. Furthermore, these two variants were only observed in Holstein cattle when querying WGS data of > 5,100 animals. Alternatively, potential de novo mutational events were assessed in each case. Filtering for heterozygous private protein-changing variants identified one DYNC1H1 frameshift variant as a candidate causal dominant acting allele in case 12 in group 3. Finally, the presence of larger structural DNA variants and chromosomal abnormalities was investigated in all cases. Depth of coverage analysis revealed two different partial monosomies of chromosome 2 segments in cases 1 and 7 in group 1 and a trisomy of chromosome 12 in the WDR45B homozygous case 13 in group 3.

Conclusions: This study presents for the first time a detailed genomic evaluation of CSCM in Holstein cattle and suggests an unexpected genetic and allelic heterogeneity considering the mode of inheritance, as well as the type of variant. For the first time, we propose candidate causal variants that may explain bovine CSCM in a certain proportion of affected calves. We present cattle as a large animal model for human CMII and propose new genes and genomic variants as possible causes for related diseases in both animals and humans.

背景:奇拉氏畸形 II 型(Chiari malformation II,CMII)最初是一种罕见的人类疾病,其特征是后脑向下疝出和小脑高耸。这种先天性脑畸形通常伴有脊柱裂,脊柱裂是一种先天性脊柱畸形,由脊神经管背侧未完全闭合所致,偶尔也会伴有其他病变。据报道,包括牛在内的几种动物也患有类似的疾病,尤其是先天性综合征。迄今为止,还没有关于牛先天性综合征恰里样畸形(CSCM)病因的报道。我们收集了 14 头受 CSCM 影响的荷斯坦牛犊(13 头纯种,1 头红色丹麦奶牛 F1 杂交),并进行了全基因组测序(WGS)。对 33 头牛进行了全基因组测序,其中包括 8 头有父母的病例(三人组;第 1 组)、3 头有单亲的病例(第 2 组)和 3 头单亲的病例(单人组;第 3 组):结果:对 13 头患有CSCM的荷斯坦牛犊和 166 头对照组牛犊进行的基于测序的全基因组关联研究发现,没有明显相关的基因组区域。假设存在一个荷斯坦品种特异性隐性等位基因,但未检测到共享同源性区域,这表明存在异质性。随后对单个病例基因组中仅存在的改变蛋白质的变体进行筛选,发现了两个影响不同基因的错义变体,即第 1 组第 4 例中的 SHC4 和第 3 组第 13 例中的 WDR45B。此外,在查询超过 5100 头牲畜的 WGS 数据时,仅在荷斯坦牛中观察到这两种变异。此外,还对每个病例中潜在的从头突变事件进行了评估。通过筛选杂合的改变蛋白质的私有变异体,在第 3 组的病例 12 中发现了一个 DYNC1H1 框移变异体,它是一个候选的致病显性等位基因。最后,对所有病例中是否存在较大的 DNA 结构变异和染色体异常进行了调查。覆盖深度分析显示,第 1 组病例 1 和 7 中的 2 号染色体有两个不同的部分单体,而第 3 组病例 13 中的 WDR45B 同源染色体则有 12 号染色体三体:本研究首次对荷斯坦牛 CSCM 进行了详细的基因组学评估,并考虑到遗传方式和变异类型,提出了意想不到的遗传和等位基因异质性。我们首次提出了候选因果变异,这些变异可能解释了一定比例的牛CSCM。我们将牛作为人类 CMII 的大型动物模型,并提出了可能导致动物和人类相关疾病的新基因和基因组变异。
{"title":"Congenital syndromic Chiari-like malformation (CSCM) in Holstein cattle: towards unravelling of possible genetic causes.","authors":"Joana Goncalves Pontes Jacinto, Anna Letko, Irene Monika Häfliger, Cord Drögemüller, Jørgen Steen Agerholm","doi":"10.1186/s13028-024-00752-y","DOIUrl":"10.1186/s13028-024-00752-y","url":null,"abstract":"<p><strong>Background: </strong>Chiari malformation type II (CMII) was originally reported in humans as a rare disorder characterized by the downward herniation of the hindbrain and towering cerebellum. The congenital brain malformation is usually accompanied by spina bifida, a congenital spinal anomaly resulting from incomplete closure of the dorsal aspect of the spinal neural tube, and occasionally by other lesions. A similar disorder has been reported in several animal species, including cattle, particularly as a congenital syndrome. A cause of congenital syndromic Chiari-like malformation (CSCM) in cattle has not been reported to date. We collected a series of 14 CSCM-affected Holstein calves (13 purebred, one Red Danish Dairy F1 cross) and performed whole-genome sequencing (WGS). WGS was performed on 33 cattle, including eight cases with parents (trio-based; group 1), three cases with one parent (group 2), and three single cases (solo-based; group 3).</p><p><strong>Results: </strong>Sequencing-based genome-wide association study of the 13 Holstein calves with CSCM and 166 controls revealed no significantly associated genome region. Assuming a single Holstein breed-specific recessive allele, no region of shared homozygosity was detected suggesting heterogeneity. Subsequent filtering for protein-changing variants that were only homozygous in the genomes of the individual cases allowed the identification of two missense variants affecting different genes, SHC4 in case 4 in group 1 and WDR45B in case 13 in group 3. Furthermore, these two variants were only observed in Holstein cattle when querying WGS data of > 5,100 animals. Alternatively, potential de novo mutational events were assessed in each case. Filtering for heterozygous private protein-changing variants identified one DYNC1H1 frameshift variant as a candidate causal dominant acting allele in case 12 in group 3. Finally, the presence of larger structural DNA variants and chromosomal abnormalities was investigated in all cases. Depth of coverage analysis revealed two different partial monosomies of chromosome 2 segments in cases 1 and 7 in group 1 and a trisomy of chromosome 12 in the WDR45B homozygous case 13 in group 3.</p><p><strong>Conclusions: </strong>This study presents for the first time a detailed genomic evaluation of CSCM in Holstein cattle and suggests an unexpected genetic and allelic heterogeneity considering the mode of inheritance, as well as the type of variant. For the first time, we propose candidate causal variants that may explain bovine CSCM in a certain proportion of affected calves. We present cattle as a large animal model for human CMII and propose new genes and genomic variants as possible causes for related diseases in both animals and humans.</p>","PeriodicalId":7181,"journal":{"name":"Acta Veterinaria Scandinavica","volume":"66 1","pages":"29"},"PeriodicalIF":1.9,"publicationDate":"2024-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11229497/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141533369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Emergence of Capnocytophaga canimorsus and Capnocytophaga cynodegmi in oral cavities of newborn puppies, a pilot study. 新生幼犬口腔中出现的 Capnocytophaga canimorsus 和 Capnocytophaga cynodegmi,一项试验性研究。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-02 DOI: 10.1186/s13028-024-00751-z
Kristiina Suominen, Silja Åvall-Jääskeläinen, Inka Sallinen, Anna-Maija Virtala, Joanna Koort

Capnocytophaga canimorsus and Capnocytophaga cynodegmi are commensal bacteria in the oral cavities of dogs. Both are zoonotic pathogens that could infect humans via dog bites. C. canimorsus may cause life-threatening infections in humans, whereas C. cynodegmi infections tend to be milder and more localized. Capsular serovars A-C of C. canimorsus seem to be virulence-associated. Some of the C. canimorsus serovars described to date can also be detected in other Capnocytophaga species, including C. cynodegmi. The objective of this pilot study was to investigate the emergence of C. canimorsus and C. cynodegmi after birth in oral cavities of puppies and to evaluate the impact of the dam's Capnocytophaga spp. carrier status on the emergence. Ten litters, altogether 59 puppies, were included in the study. The puppies and their dams were sampled at five time points over seven weeks after whelping. Oral swab samples taken were investigated for the presence of C. canimorsus and C. cynodegmi by species-specific polymerase chain reaction (PCR), the specificity of which was verified by sequencing a selection of the PCR products. Samples that were positive in Capnocytophaga PCR reactions were also capsular-typed by PCR to gain more knowledge about the Capnocytophaga spp. present in the samples. Altogether 10.2% and 11.9% of puppies, or 20.0% and 30.0% of litters tested PCR-positive for C. canimorsus and C. cynodegmi, respectively. Capnocytophaga PCR-positive puppy samples were always positive for only C. cynodegmi or C. canimorsus, not both. Most Capnocytophaga PCR-positive puppies became positive at the age of 5 to 7 weeks. Only a minority (5/16) of the C. cynodegmi PCR-positive dog samples were positive in capsular typing PCR, whereas all C. canimorsus PCR-positive dog samples were negative in capsular typing PCR. For all Capnocytophaga PCR-positive puppies, their dam was positive for the same Capnocytophaga species. These results suggest that puppies become colonized by C. cynodegmi or C. canimorsus from their dams at the time of deciduous teeth eruption.

Capnocytophaga canimorsus 和 Capnocytophaga cynodegmi 是狗口腔中的共生细菌。这两种细菌都是人畜共患的病原体,可通过狗咬伤感染人类。C.canimorsus可能会对人类造成危及生命的感染,而C.cynodegmi的感染往往比较轻微,而且更局限于局部。C.canimorsus的A-C囊血清型似乎与毒力有关。迄今描述的一些 C. canimorsus 血清型也能在其他 Capnocytophaga 种类(包括 C. cynodegmi)中检测到。这项试验性研究的目的是调查幼犬出生后口腔中出现的 C. canimorsus 和 C. cynodegmi 的情况,并评估母犬的 Capnocytophaga spp.研究共包括 10 窝,共 59 只幼犬。在产后七周内的五个时间点对幼犬及其母犬进行采样。口腔拭子样本通过物种特异性聚合酶链式反应(PCR)检测是否存在卡尼莫氏菌和犬毛囊虫,并对部分 PCR 产物进行测序以验证其特异性。对 Capnocytophaga PCR 反应呈阳性的样本也进行了 PCR 鉴定,以进一步了解样本中存在的 Capnocytophaga 种属。分别有 10.2% 和 11.9% 的幼犬或 20.0% 和 30.0% 的幼仔在 C. canimorsus 和 C. cynodegmi 的 PCR 检测中呈阳性。Capnocytophaga PCR 阳性的幼犬样本总是只对 Cynodegmi 或 C. canimorsus 呈阳性,而不是两者都呈阳性。大多数 Capnocytophaga PCR 阳性的幼犬在 5 到 7 周大时呈阳性。只有少数(5/16)C. cynodegmi PCR 阳性的狗样本在胶囊分型 PCR 中呈阳性,而所有 C. canimorsus PCR 阳性的狗样本在胶囊分型 PCR 中呈阴性。所有 Capnocytophaga PCR 阳性的幼犬,其母犬均对相同的 Capnocytophaga 种类呈阳性。这些结果表明,幼犬在萌出乳牙时就已经从母犬处感染了 Cynodegmi 或 C. canimorsus。
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引用次数: 0
Morphomolecular identification of heavy parasitic typhlitis in layer flocks: tissue response and cell-mediated reaction. 蛋鸡群重型寄生虫斑疹伤寒的形态分子鉴定:组织反应和细胞介导反应。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-07-02 DOI: 10.1186/s13028-024-00748-8
Mohamed A El-Saied, Marwa M Attia, Marwa A Ibrahim, Mohamed Elaish, Mohamed R Mousa

Background: Heterakis gallinarum (H. gallinarum) is a common poultry parasite that can be found in the ceca of many gallinaceous bird species, causing minor pathology and reduced weight gain. Most infections go unnoticed in commercial flocks due to the dependence on fecal egg counts, which are prone to false-negative diagnoses. Furthermore, there is a lack of research on gastrointestinal nematodes that use molecular identification methods, which could be essential for rapid diagnosis and developing efficient control approaches. As a result, the study aimed to look at the cause of mortality in layer chickens induced by H. gallinarum in Egyptian poultry farms using morphological, ultrastructural, and molecular characterization. Histopathological, immunohistochemical, and cell-mediated immune responses from damaged cecal tissues were also examined.

Results: Seventy bird samples from ten-layer flocks of different breeds (Native, white, and brown layers) suffering from diarrhea, decreased egg output, and emaciation were collected. Cecal samples were collected from affected and non-affected birds and were examined for parasitic diseases using light and a scanning electron microscope. The mitochondrial cytochrome oxidase 1 (COX1) gene was used to characterize H. gallinarum. Our results showed that the collected nematodal worms were identified as H. gallinarum (male and female), further confirmed by COX1 gene amplification and sequence alignment. Gene expression analysis of the inflammatory markers in infected tissues showed a significant up-regulation of IL-2, IFN-γ, TLR-4, and IL-1β and a significant down-regulation of the anti-inflammatory IL-10. The mRNA level of the apoptotic cas-3 revealed apoptotic activity among the H. gallinarum samples compared to the control group.

Conclusions: Our results implemented the use of molecular methods for the diagnosis of Heterakis, and this is the first report showing the tissue immune response following infection in layers: upregulation of IL-1β, IFN-γ, Il-2, and TLR-4, while down-regulation of anti-inflammatory IL-10 in cecal tissue, Cas-3 apoptotic activity and Nuclear factor-κB (NF-κB)activity with immunophenotyping of T-cells in Heterakis infected tissue.

背景:胆粉虫(H. gallinarum)是一种常见的家禽寄生虫,可在多种五倍子鸟类的盲肠中发现,会引起轻微病变和增重下降。由于依赖于粪便卵计数,商业化禽群中的大多数感染都未被察觉,而粪便卵计数容易导致假阴性诊断。此外,目前还缺乏使用分子鉴定方法的胃肠道线虫研究,而分子鉴定方法对于快速诊断和制定有效的控制方法至关重要。因此,本研究旨在通过形态学、超微结构和分子特征描述,研究埃及家禽养殖场中由 H. gallinarum 引起的蛋鸡死亡原因。此外,还研究了受损盲肠组织的组织病理学、免疫组织化学和细胞介导的免疫反应:从十个不同品种的蛋鸡群(土鸡、白羽蛋鸡和褐羽蛋鸡)中收集了七十个患有腹泻、产蛋量减少和消瘦的鸡只样本。从患病和未患病的禽类身上采集了盲肠样本,并用光镜和扫描电子显微镜对其进行了寄生虫病检查。线粒体细胞色素氧化酶 1 (COX1) 基因被用来鉴定 H. gallinarum。结果表明,收集到的线虫被鉴定为 H. gallinarum(雄性和雌性),COX1 基因扩增和序列比对进一步证实了这一点。感染组织中炎症标志物的基因表达分析表明,IL-2、IFN-γ、TLR-4 和 IL-1β 显著上调,而抗炎的 IL-10 则显著下调。与对照组相比,凋亡cas-3的mRNA水平揭示了五倍子叶绿体样本中的凋亡活性:结论:我们的研究结果证实了使用分子方法诊断胆囊息肉疽的可行性,这也是首次报道胆囊息肉疽感染后的组织免疫反应:IL-1β、IFN-γ、Il-2和TLR-4上调,而抗炎性IL-10在盲肠组织中下调,Cas-3凋亡活性和核因子-κB(NF-κB)活性与胆囊息肉疽感染组织中T细胞的免疫分型有关。
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引用次数: 0
Evaluation of forelimb gait variation overground at a walk in sound and lame dogs using a combination of diagnostic techniques. 使用综合诊断技术评估健康狗和瘸腿狗在地面行走时前肢步态的变化。
IF 1.9 2区 农林科学 Q2 VETERINARY SCIENCES Pub Date : 2024-06-20 DOI: 10.1186/s13028-024-00746-w
Miriam Kjörk Granström, Lars Roepstorff, Kjerstin Pettersson, Ingrid Ljungvall, Maria Dimopoulou, Charlie Peck, Annika Bergström

Background: Kinetic and kinematic gait analysis is increasingly practised as a part of lameness evaluation in dogs. The aim of this study was to examine the normal short- and long-term variation in forelimb gait in sound control dogs (CD) at a walk using seven selected variables of objective kinetic and kinematic gait analyses. Also, to compare the findings in CD to a group of forelimb lame dogs with elbow osteoarthritis (OAD). An additional aim was to test a kinetic based graphic method for lameness detection; symmetry squares (SS). A prospective longitudinal study was carried out on client owned CD and OAD. Clinical and orthopaedic evaluations were performed to ensure soundness and detect and grade lameness. Seven kinetic and kinematic variables and SS were tested for lameness evaluation. The CD were divided into two subgroups, CD1 and CD2, and examined twice: CD1 with two months interval and CD2 with 3-4 h interval. The OAD group was evaluated once and compared to the CD groups' first examination.

Results: Thirteen CD and 19 OAD were included. For CD1 and CD2, there were no significant differences in any examined variable between examination occasions. Total peak force/impulse symmetry and fore-hind peak force/impulse symmetry differed significantly between OAD and CD. Symmetry squares had a 74% agreement to subjective orthopaedic evaluations.

Conclusions: In CD, no difference in the examined variables was seen between examination occasions. Four out of seven objective variables differed significantly between CD and OAD. The graphic SS method might have diagnostic potential for lameness detection, making it possible to detect a shift from lame to non-lame limbs. Potentially, this might be especially helpful in bilaterally lame dogs, which often represent a clinical challenge in lameness evaluation.

背景:作为犬跛足评估的一部分,运动学和运动学步态分析的应用越来越广泛。本研究的目的是利用客观运动学和运动学步态分析的七个选定变量,研究健全对照组犬(CD)在步行时前肢步态的正常短期和长期变化。此外,还将 CD 的研究结果与一组患有肘关节骨关节炎 (OAD) 的前肢瘸腿犬进行比较。另外一个目的是测试一种基于运动学的跛足检测图形方法:对称方块(SS)。对客户饲养的 CD 和 OAD 进行了前瞻性纵向研究。对它们进行了临床和矫形评估,以确保其健康状况良好,并对跛行进行检测和分级。在跛行评估中测试了七个动力学和运动学变量以及 SS。CD 组分为 CD1 和 CD2 两组,分别进行两次检查:CD1 组间隔两个月,CD2 组间隔 3-4 小时。对 OAD 组进行一次评估,并与 CD 组的首次检查进行比较:结果:共纳入 13 例 CD 组和 19 例 OAD 组。对于 CD1 和 CD2,不同检查时间的任何检查变量均无显著差异。总峰值力/脉冲对称性和前后峰值力/脉冲对称性在 OAD 和 CD 之间存在显著差异。对称性方格与主观矫形评估的一致性为 74%:在 CD 中,不同检查场合的检查变量没有差异。在七个客观变量中,有四个在 CD 和 OAD 之间存在显著差异。图形 SS 法可能对跛足检测具有诊断潜力,可以检测出跛足肢体向非跛足肢体的转变。这可能对双侧跛行的狗特别有帮助,因为双侧跛行往往是跛行评估中的一个临床难题。
{"title":"Evaluation of forelimb gait variation overground at a walk in sound and lame dogs using a combination of diagnostic techniques.","authors":"Miriam Kjörk Granström, Lars Roepstorff, Kjerstin Pettersson, Ingrid Ljungvall, Maria Dimopoulou, Charlie Peck, Annika Bergström","doi":"10.1186/s13028-024-00746-w","DOIUrl":"10.1186/s13028-024-00746-w","url":null,"abstract":"<p><strong>Background: </strong>Kinetic and kinematic gait analysis is increasingly practised as a part of lameness evaluation in dogs. The aim of this study was to examine the normal short- and long-term variation in forelimb gait in sound control dogs (CD) at a walk using seven selected variables of objective kinetic and kinematic gait analyses. Also, to compare the findings in CD to a group of forelimb lame dogs with elbow osteoarthritis (OAD). An additional aim was to test a kinetic based graphic method for lameness detection; symmetry squares (SS). A prospective longitudinal study was carried out on client owned CD and OAD. Clinical and orthopaedic evaluations were performed to ensure soundness and detect and grade lameness. Seven kinetic and kinematic variables and SS were tested for lameness evaluation. The CD were divided into two subgroups, CD1 and CD2, and examined twice: CD1 with two months interval and CD2 with 3-4 h interval. The OAD group was evaluated once and compared to the CD groups' first examination.</p><p><strong>Results: </strong>Thirteen CD and 19 OAD were included. For CD1 and CD2, there were no significant differences in any examined variable between examination occasions. Total peak force/impulse symmetry and fore-hind peak force/impulse symmetry differed significantly between OAD and CD. Symmetry squares had a 74% agreement to subjective orthopaedic evaluations.</p><p><strong>Conclusions: </strong>In CD, no difference in the examined variables was seen between examination occasions. Four out of seven objective variables differed significantly between CD and OAD. The graphic SS method might have diagnostic potential for lameness detection, making it possible to detect a shift from lame to non-lame limbs. Potentially, this might be especially helpful in bilaterally lame dogs, which often represent a clinical challenge in lameness evaluation.</p>","PeriodicalId":7181,"journal":{"name":"Acta Veterinaria Scandinavica","volume":"66 1","pages":"25"},"PeriodicalIF":1.9,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11191351/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141431119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Acta Veterinaria Scandinavica
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