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Insights into the factors affecting synonymous codon usage bias in the coat protein of soil-borne sugar beet-infecting viruses 土传甜菜侵染病毒外壳蛋白同义密码子使用偏向性影响因素的研究
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_402
S. Farzadfar, R. Pourrahim
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引用次数: 0
Interaction between proteins of the PPARγ and NFκB immune response pathways and rotavirus non-structural proteins. PPARγ和NFκB免疫反应通路蛋白与轮状病毒非结构蛋白的相互作用。
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_105
Dory Gómez, C. Guerrero
Cells infected with MA104 rotavirus and/or transfected with plasmids expressing NSP proteins, were analyzed for expression of cellular proteins related to NFκB and PPARγ pathways and evaluated through the ELISA, luminescence, flow cytometry and Western blot techniques. The association between cellular and viral (NSPs) proteins was examined by ELISA, epifluorescence and confocal microscopy techniques. It was observed that NSP1 protein interacts with RXR, NSP1, and NSP3 with PPARγ, NSP2 with p-IKKα/β and NSP5 with NFκB proteins. We have found that phosphorylated PPARγ is localized in cytoplasm and transcriptional activity of PPRE is diminished. These results lead to the conclusion, that RRV activates the proinflammatory pathway, increasing the expression of NFκB and possibly by PPARγ phosphorylation, its translocation to the nucleus is impeded, thus inactivating the proinflammatory pathway. Keywords: rotavirus; PPARγ; NFκB; NSPs; RRV.
对感染MA104轮状病毒和/或转染表达NSP蛋白的质粒的细胞进行NFκB和PPARγ通路相关蛋白的表达分析,并通过ELISA、发光、流式细胞术和Western blot技术进行评估。通过ELISA、荧光和共聚焦显微镜技术检测细胞和病毒(NSPs)蛋白之间的关联。NSP1蛋白与RXR、NSP1、NSP3蛋白与PPARγ、NSP2蛋白与p-IKKα/β、NSP5蛋白与NFκB蛋白相互作用。我们发现磷酸化的PPRE γ定位于细胞质中,PPRE的转录活性降低。这些结果可以得出结论,RRV激活促炎途径,增加NFκB的表达,并可能通过PPARγ磷酸化,阻碍其向细胞核的易位,从而使促炎途径失活。关键词:轮状病毒;PPARγ;NFκB;NSPs;RRV。
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引用次数: 0
A gene expression signature that correlates with CD8+T cell expansion in acute Epstein-Barr virus infection. 急性eb病毒感染中与CD8+T细胞扩增相关的基因表达特征
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_303
Yijing Chen, Hanqing Wang, Xia Liu, Bing Luo

Acute infectious mononucleosis (AIM) is associated with Epstein-Barr virus (EBV) infection. We explored molecular mechanisms regarding the expression of CD8+T cells in convalescence stage (CONV). Differentially expressed genes (DEGs) were identified by analyzing GEO expression profiles. Subsequently, Gene Set Enrichment Analysis (GSEA), Protein-Protein Interactions (PPI) network, and gene-micro RNAs networks were used to identify hub genes and associated pathways. GSEA provided evidence that the top 3 gene sets in GSEA were all related to integrins. We identified ten hub genes in the PPI network and DGIdb was applied to predict potential targets that might reverse the expression of hub genes. Our study enhances a mechanistic understanding of the CD8+T cells expansion in acute EBV infection and provides potential treatment targets for further research. Keywords: acute infectious mononucleosis; bioinformatics; CD8+T cells; differentially expressed genes; EBV.

急性传染性单核细胞增多症(AIM)与eb病毒(EBV)感染有关。我们探讨了CD8+T细胞在恢复期(CONV)表达的分子机制。通过分析GEO表达谱,鉴定出差异表达基因(DEGs)。随后,利用基因集富集分析(GSEA)、蛋白-蛋白相互作用(PPI)网络和基因-微rna网络鉴定中心基因及其相关途径。GSEA提供的证据表明,GSEA中排名前3位的基因集均与整合素相关。我们在PPI网络中鉴定了10个枢纽基因,并应用DGIdb来预测可能逆转枢纽基因表达的潜在靶点。我们的研究增强了对急性EBV感染中CD8+T细胞扩增的机制理解,并为进一步研究提供了潜在的治疗靶点。关键词:急性传染性单核细胞增多症;生物信息学;CD8 + T细胞;差异表达基因;EBV。
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引用次数: 0
Genomic profiling of three progenies isolated from a swarm of eGFP-tagged canine distemper viruses undergoing 40 serial passages 从一群egfp标记的犬瘟热病毒中分离出的三个子代进行40次连续传代的基因组分析
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_408
Shuning Zhou, Ling Wang, Jiahui Lin, Ning Wang, Yongle Yu, Youming Zhang, Fuxiao Liu
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引用次数: 0
Simultaneous detection of velogenic Newcastle disease virus of genotype XIII 2.2 from spot-billed pelican and backyard chicken: implications to the viral maintenance and spread. 在斑嘴鹈鹕和家鸡中同时检测到基因型为XIII 2.2的新城疫病毒:对病毒维持和传播的意义。
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_305
Deepthi Balam, Ratnamma Doddamane, Ramani Pushpa Rayudu, Shrikrishna Isloor, Veeregowda Belamaranahally, Himaja Maddireddy, Muralidhar Metta

Despite the widespread occurence of Newcastle disease virus (NDV) in different avian species, there has been scanty reports on genetic characterization of NDV strains from wild birds in India. During 2017-18, a total of forty eight cloacal swab samples were collected from apparently healthy migratory birds (painted storks, n = 32 and spot-billed pelicans, n = 16) at the Telineelapuram bird sanctuary of Andhra Pradesh, India. NDV was isolated from a spot-billed pelican (NDV/Pelican/Telineelapuram/2018) which is genetically identical to that isolated from a naturally infected backyard chicken flock (NDV/Chicken/SKLM-1/2018). The isolates are found to be velogenic based on mean death time, intracerebral pathogenicity index and the putative fusion protein cleavage site (112R-R-R-K-R-F117). Phylogenetic analysis based on full-length fusion gene classified the isolates into genotype XIII, sub-genotype 2.2, however these isolates demonstrated multiple amino acid substitutions in the critical domains of F and HN proteins. The pelican strain (MIG-9) was tested for its pathogenic and transmission potential in three-weeks-old broiler chickens and the isolate proved to be highly virulent to chickens. To the best of our knowledge, this is the first evidence for the role of spot-billed pelicans in the maintenance of virulent NDV and its transmission to chickens in India. This study further highlights the role of wild birds in NDV transmission and the need for enhanced biosecurity in commercial poultry operations. Keywords: Newcastle disease virus; Pelecanus philippensis; chicken; transmission; pathogenicity; India.

尽管新城疫病毒(NDV)在不同的鸟类中广泛存在,但在印度,关于新城疫病毒毒株遗传特征的报道很少。2017- 2018年,在印度安得拉邦的Telineelapuram鸟类保护区,从表面健康的候鸟(画鹳,n = 32)和斑嘴鹈鹕,n = 16)中共收集了48个阴道炎拭子样本。从斑嘴鹈鹕(NDV/ pelican /Telineelapuram/2018)中分离出NDV,该病毒与从自然感染的后院鸡群(NDV/ chicken /SKLM-1/2018)中分离出的NDV基因相同。根据平均死亡时间、脑内致病性指数和推测的融合蛋白裂解位点(112R-R-R-K-R-F117),发现分离株具有速度性。基于全长融合基因的系统发育分析将分离株划分为基因型XIII,亚基因型2.2,但这些分离株在F和HN蛋白的关键结构域存在多个氨基酸替换。对鹈鹕毒株(MIG-9)在3周龄肉鸡中的致病性和传播潜力进行了检测,分离物对鸡具有高毒力。据我们所知,这是斑嘴鹈鹕在印度维持致命的NDV及其传播给鸡的作用的第一个证据。这项研究进一步强调了野鸟在新城疫病传播中的作用以及在商业家禽经营中加强生物安全的必要性。关键词:新城疫病毒;Pelecanus philippensis;鸡;传输;致病性;印度。
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引用次数: 1
Molecular identification and characterization of badnaviruses infecting sugarcane in Ethiopia. 侵染埃塞俄比亚甘蔗的恶性病毒的分子鉴定和鉴定。
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_101
Simatsidk Haregu, D. Kidanemariam, A. Abraham
Sugarcane bacilliform virus (SCBV) is an economically important virus limiting sugarcane production worldwide. Although Ethiopia is a major sugarcane producer, and virus-like symptoms are frequently observed in sugarcane fields, there is a complete lack of information as to the occurrence, distribution and molecular properties of SCBV. This study was aimed to identify and characterize SCBV isolates in Ethiopia using molecular methods. Out of 292 leaf samples collected and tested by PCR, 76 samples (26% incidence level) were found SCBV-positive. Nucleotide sequence analysis results showed that three Ethiopian isolates (SCBV-EtS3, SCBV-EtS6 and SCBV-EtC10) shared high level of nucleotide identity (99.5-100%) among themselves and with SCBV isolates from China (accession numbers MH037614 and MH037915). Another isolate, SCBV-EtC2, shared maximum identity of 78% with the other three SCBV isolates from Ethiopia and 99.8% with SCBV isolates from China (KM214357 and KM214307). Based on phylogenetic analysis, isolates from Ethiopia were segregated into two different clusters. Isolates SCBV-EtS3, SCBV-EtS6 and SCBV-EtC10 clustered with SCBV-Q group and SCBV-EtC2 with SCBV-H group. This study provides information on the occurrence of SCBV for the first time in Ethiopia and also contributes to the understanding of the genetic diversity of SCBV. Keywords: Caulimoviridae; RNase H, Saccharum spp.; Sugarcane bacilliform virus.
甘蔗杆菌状病毒(SCBV)是世界范围内限制甘蔗生产的重要经济病毒。虽然埃塞俄比亚是一个主要的甘蔗生产国,而且在甘蔗田里经常观察到类似病毒的症状,但完全缺乏关于单叶结叶病毒的发生、分布和分子特性的信息。本研究旨在利用分子方法鉴定和表征埃塞俄比亚的SCBV分离株。PCR检测的292份叶片样本中,有76份(26%)呈scbv阳性。核苷酸序列分析结果显示,3株埃塞俄比亚分离株(SCBV- ets3、SCBV- ets6和SCBV- etc10)与中国分离株(鉴定号MH037614和MH037915)具有较高的核苷酸同源性(99.5-100%)。另一株分离株SCBV- etc2与来自埃塞俄比亚的其他3株SCBV分离株(KM214357和KM214307)的一致性最高,为78%,与来自中国的SCBV分离株(KM214357和KM214307)的一致性最高为99.8%。基于系统发育分析,埃塞俄比亚分离株被分为两个不同的聚类。分离株SCBV-EtS3、SCBV-EtS6和scbv - et10与SCBV-Q群聚集,SCBV-EtC2与SCBV-H群聚集。该研究首次提供了埃塞俄比亚SCBV发生的信息,也有助于了解SCBV的遗传多样性。关键词:Caulimoviridae;核糖核酸酶H,糖精;甘蔗杆菌状病毒。
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引用次数: 3
Transcriptomic analyses reveal highly conserved plant amalgavirus genomes in different species of Allium. 转录组学分析显示葱属植物中汞齐病毒基因组高度保守。
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_102
J. A. D. dos Santos, A. M. F. Silva, Júlio Carlos Polimeni de Mesquita, R. Blawid
This work aims to study amalgavirus diversity in different species of allium collected around the world. Transcriptomic data of 19 Sequence Read Archive runs available at GenBank, as well as RNA-seq data generated from onion tissue from fields in Brazil were used to assemble nine allium cepa amalgavirus 1 (AcAV-1) and nine allium cepa amalgavirus 2 (AcAV-2) genomes from different species of allium worldwide. Sequence demarcation tool analyses of RdRp amino acid sequences revealed identities above 99% within each species, except for an isolate of AcAV-1 from Allium escalonicum from China. This work contributes to the understanding of the genetic diversity of amalgaviruses that infect the genus Allium. Keywords: amalgaviruses; Allium transcriptomic datasets; Allium sp.
本研究旨在研究世界各地不同种类葱属植物中汞齐病毒的多样性。利用GenBank提供的19个Sequence Read Archive序列的转录组学数据,以及从巴西大田洋葱组织中产生的RNA-seq数据,组装了来自世界各地不同葱属植物的9个葱属银汞齐病毒1 (AcAV-1)和9个葱属银汞齐病毒2 (AcAV-2)基因组。序列划分工具分析显示,除中国产葱属AcAV-1分离株外,其他品种的RdRp氨基酸序列同源性均在99%以上。这项工作有助于了解感染葱属的汞齐病毒的遗传多样性。关键词:amalgaviruses;葱属植物转录组数据集;葱属植物sp。
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引用次数: 1
Integrase deletion mutation impairs the Gag cleavage in prototype foamy virus 整合酶缺失突变影响泡沫病毒原型Gag的裂解
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_401
Jinsun Kim, C. Shin
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引用次数: 0
Molecular characterization of a ssRNA mycovirus isolated from the forest pathogenic fungus Armillaria ostoyae. 从森林致病真菌蜜环菌分离的ssRNA分枝病毒的分子特征。
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_309
Tomáš Tonka, Lucie Walterová, Ondřej Hejna, Vladislav Čurn

Letter to the editor (no abstract) Keywords.

致编辑信(无摘要)
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引用次数: 1
The induction of virus-neutralizing antibodies in influenza A-infected mice treated with Oseltamivir phosphate: effect of dosage and scheduling. 磷酸奥司他韦在甲型流感感染小鼠体内诱导病毒中和抗体:剂量和时间安排的影响。
IF 1.7 4区 医学 Q4 VIROLOGY Pub Date : 2022-01-01 DOI: 10.4149/av_2022_312
Miriam Mikušová, Karolína Tomčíková, Katarína Briestenská, Eva Varečková

Oseltamivir phosphate (OS) is currently the most frequently used influenza antiviral drug. It moderates the course of influenza virus type A (IAV) infection, however, its impact on the induction of virus-neutralizing antibodies (VNAbs) is not understood in details. Here, we examined the influence of low (10 mg/kg) or high (60 mg/kg) doses of OS on the viral titer in lungs of BALB/c mice infected with 0.5 LD50 of IAV and on the level of VNAbs. Prophylactic application of OS (6 h before the infection) delayed the increase of viral titer in lungs with a lower peak in comparison to non-treated control mice. After therapeutic OS application (44 h after the infection), maximum of virus titer did not significantly change. However, the induction of VNAbs strongly decreased, to 16.7%-18.1% of the control, after preventive application of high OS dose. A minimal decrease of VNAbs titers was observed in groups of mice treated with low dose of OS applied therapeutically. They lowered to 91.1% / 14 or to 94.1% / 21 days post infection (p.i.) of VNAbs titers of non-treated control mice. In all other groups, levels of VNAbs titers dropped to 26.5-53.7% of those of non-treated mice. It should be noted that VNAbs titers were in direct proportion to maximal virus titers in mouse lungs of corresponding groups. In summary, after OS application the clinical symptoms of the disease were milder or non-observable in all OS-treated groups, but the lowering of VNAbs titers was dependent on the OS dose and interval between drug app-lication and the start of infection. Keywords: influenza A virus; Oseltamivir; prophylactic treatment; therapeutic treatment; virus-neutralizing antibodies.

磷酸奥司他韦(OS)是目前最常用的流感抗病毒药物。它能减缓甲型流感病毒(IAV)感染的过程,然而,其对诱导病毒中和抗体(vnab)的影响尚不清楚。在这里,我们检测了低剂量(10 mg/kg)或高剂量(60 mg/kg) OS对0.5 LD50 IAV感染的BALB/c小鼠肺部病毒滴度和vnab水平的影响。预防性应用OS(感染前6小时)延迟了肺部病毒滴度的增加,与未处理的对照小鼠相比,峰值较低。应用OS治疗后(感染后44 h),最大病毒滴度无明显变化。然而,在预防性应用高剂量OS后,vnab的诱导率明显下降,为对照组的16.7%-18.1%。用低剂量OS治疗的小鼠组中观察到vnab滴度的微小下降。感染后14天,对照组vnab滴度降至91.1%,21天降至94.1%。在所有其他组中,vnab滴度水平下降到未治疗小鼠的26.5-53.7%。值得注意的是,vnab滴度与相应组小鼠肺中最大病毒滴度成正比。综上所述,应用OS后,所有OS治疗组的疾病临床症状均较轻或不可观察到,但vnab滴度的降低取决于OS剂量和用药与感染开始的时间间隔。关键词:甲型流感病毒;奥司他韦;预防性治疗;治疗性治疗;virus-neutralizing抗体。
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引用次数: 0
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Acta virologica
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