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Cambridge prisms, Precision medicine最新文献

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Making inroads to precision medicine for the treatment of autoimmune diseases: Harnessing genomic studies to better diagnose and treat complex disorders. 进军精准医学治疗自身免疫性疾病:利用基因组研究更好地诊断和治疗复杂疾病
Pub Date : 2023-05-11 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.14
Yuriy Baglaenko, Catriona Wagner, Vijay G Bhoj, Petter Brodin, M Eric Gershwin, Daniel Graham, Pietro Invernizzi, Kenneth K Kidd, Ilya Korsunsky, Michael Levy, Andrew L Mammen, Victor Nizet, Francisco Ramirez-Valle, Edward C Stites, Marc S Williams, Michael Wilson, Noel R Rose, Virginia Ladd, Marina Sirota

Precision Medicine is an emerging approach for disease treatment and prevention that takes into account individual variability in genes, environment, and lifestyle. Autoimmune diseases are those in which the body's natural defense system loses discriminating power between its own cells and foreign cells, causing the body to mistakenly attack healthy tissues. These conditions are very heterogeneous in their presentation and therefore difficult to diagnose and treat. Achieving precision medicine in autoimmune diseases has been challenging due to the complex etiologies of these conditions, involving an interplay between genetic, epigenetic, and environmental factors. However, recent technological and computational advances in molecular profiling have helped identify patient subtypes and molecular pathways which can be used to improve diagnostics and therapeutics. This review discusses the current understanding of the disease mechanisms, heterogeneity, and pathogenic autoantigens in autoimmune diseases gained from genomic and transcriptomic studies and highlights how these findings can be applied to better understand disease heterogeneity in the context of disease diagnostics and therapeutics.

精准医学是一种新兴的疾病治疗和预防方法,它考虑了基因、环境和生活方式的个体差异
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引用次数: 0
Points to consider in the development of national human genome editing policy. 在制定国家人类基因组编辑政策时应考虑的要点
Pub Date : 2023-03-27 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.11
Dianne Nicol, Simon Niemeyer, Rebecca Paxton, Christopher Rudge

Clustered regularly interspaced short palindromic repeats and other genome editing technologies have the potential to transform the lives of people affected by genetic disorders for the better. However, it is widely recognised that they also raise large ethical and policy questions. The focus of this article is on how national genome editing policy might be developed in ways that give proper recognition to these big questions. The article first considers some of the regulatory challenges involved in dealing these big ethical and social questions, and also economic issues. It then reviews the outcomes of a series of major reports on genome editing from international expert bodies, with a particular focus on the work of the World Health Organization's expert committee on genome editing. The article then summarises five policy themes that have emerged from this review of the international reports together with a review of other literature, and the authors' engagement with members of the Australian public and with a wide range of experts across multiple disciplines. Each theme is accompanied by one to three pointers for policymakers to consider in developing genome editing policy.

定期间隔聚集的短回文重复序列和其他基因组编辑技术有可能使受遗传疾病影响的人的生活变得更好。然而,人们普遍认为,它们也引发了重大的伦理和政策问题。本文的重点是如何制定国家基因组编辑政策,以适当地认识到这些重大问题。本文首先考虑了在处理这些重大的伦理和社会问题以及经济问题时所涉及的一些监管挑战。然后,它审查了国际专家机构关于基因组编辑的一系列主要报告的结果,特别关注世界卫生组织基因组编辑专家委员会的工作。然后,文章总结了国际报告综述中出现的五个政策主题,以及对其他文献的综述,以及作者与澳大利亚公众成员和多学科广泛专家的接触。每个主题都伴随着一到三个指标,供决策者在制定基因组编辑政策时考虑。
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引用次数: 0
Polypharmacy and precision medicine. 综合药学和精准医学
Pub Date : 2023-03-10 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.10
Kenji Fujita, Nashwa Masnoon, John Mach, Lisa Kouladjian O'Donnell, Sarah N Hilmer

Precision medicine is an approach to maximise the effectiveness of disease treatment and prevention and minimise harm from medications by considering relevant demographic, clinical, genomic and environmental factors in making treatment decisions. Precision medicine is complex, even for decisions about single drugs for single diseases, as it requires expert consideration of multiple measurable factors that affect pharmacokinetics and pharmacodynamics, and many patient-specific variables. Given the increasing number of patients with multiple conditions and medications, there is a need to apply lessons learned from precision medicine in monotherapy and single disease management to optimise polypharmacy. However, precision medicine for optimisation of polypharmacy is particularly challenging because of the vast number of interacting factors that influence drug use and response. In this narrative review, we aim to provide and apply the latest research findings to achieve precision medicine in the context of polypharmacy. Specifically, this review aims to (1) summarise challenges in achieving precision medicine specific to polypharmacy; (2) synthesise the current approaches to precision medicine in polypharmacy; (3) provide a summary of the literature in the field of prediction of unknown drug-drug interactions (DDI) and (4) propose a novel approach to provide precision medicine for patients with polypharmacy. For our proposed model to be implemented in routine clinical practice, a comprehensive intervention bundle needs to be integrated into the electronic medical record using bioinformatic approaches on a wide range of data to predict the effects of polypharmacy regimens on an individual. In addition, clinicians need to be trained to interpret the results of data from sources including pharmacogenomic testing, DDI prediction and physiological-pharmacokinetic-pharmacodynamic modelling to inform their medication reviews. Future studies are needed to evaluate the efficacy of this model and to test generalisability so that it can be implemented at scale, aiming to improve outcomes in people with polypharmacy.

精准医学是一种通过考虑相关的人口统计学、临床、基因组学和环境因素来制定治疗决策,最大限度地提高疾病治疗和预防效果,并最大限度地减少药物伤害的方法。精准医学是复杂的,甚至是针对单一疾病的单一药物的强制决策,因为它需要仔细考虑影响药代动力学和药效学的多种可测量因素,以及许多患者特异性变量。鉴于患有多种疾病和药物的患者数量不断增加,有必要应用从单一治疗和单一疾病管理中获得的精确医学经验来优化多种药物治疗。然而,precisionmedicineforoptimisa-tionofpolypharmacyisparticularlychallengingbecauseofthevastnumberofinteractingfactors thatinfluencedruguseandresponse。Inthisnarrativereview, weaimtoprovideandapplythelatest researchfindingstoachieveprecisionmedicineinthecontextofpolypharmacy。具体地说,这个reviewaimsto (1) summarisechallengesinachievingprecisionmedicinespecifictopolypharmacy;(2)综合当前多药联合用药的精准用药方法;(3)对未知药-药相互作用(DDI)预测领域的文献进行综述;(4)提出一种为多药联合用药患者提供精准用药的新方法。为了使我们提出的模型在常规临床实践中得以实施,需要使用生物信息学方法对广泛的数据进行综合干预,以预测多种药物治疗方案对个体的影响,并将其整合到电子病历中。此外,临床医生需要接受培训,以解释来自药物基因组学测试、DDI预测和生理-药代动力学-药效学等来源的数据结果
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引用次数: 0
Targeting BCR-ABL1-positive leukaemias: a review article. 以 BCR-ABL1 阳性白血病为靶点:综述文章。
Pub Date : 2023-03-06 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.9
Steven Leak, Gillian A Horne, Mhairi Copland

Treatment and understanding of BCR::ABL1-positive leukaemias is a precision medicine success story. Our appreciation of the BCR::ABL1 gene and resulting BCR::ABL1 oncoprotein in chronic myeloid leukaemia (CML) and Philadelphia chromosome-positive (Ph+) acute leukaemias, has led to treatment advances associated with exceptional improvements in patient outcomes with normal life expectancy for many patients with chronic phase (CP-)CML. However, despite these major therapeutic advances, the management of Ph+ leukaemias remains complex, with development of specific resistance mutations on treatment, as well as the need for lifelong therapy in most patients due to the persistence of CML stem cells despite prolonged tyrosine kinase inhibitors (TKIs) treatment. BCR::ABL1-specific TKIs are associated with chronic toxicities affecting quality-of-life in many patients but can also result in more serious pulmonary and cardiovascular complications. Dose optimisation is increasingly being used to manage side effects and maintain molecular response in CML patients. Here, we review the development of BCR::ABL1-specific TKIs from the discovery of imatinib in 1996 to the more recent second- and third-generation TKIs and emerging specifically targeting the ABL myristoyl pocket (STAMP) inhibitors. We will also evaluate the current evidence for treatment of BCR::ABL1-positive leukaemias, including TKI discontinuation in optimally responding CP-CML patients.

对BCR::ABL1阳性白血病的治疗和了解是精准医疗的成功典范。我们对慢性髓性白血病(CML)和费城染色体阳性(Ph+)急性白血病中的 BCR::ABL1 基因和由此产生的 BCR::ABL1 肿瘤蛋白的了解,促进了治疗的进步,改善了患者的预后,使许多慢性期(CP-)CML 患者的预期寿命恢复正常。然而,尽管取得了这些重大的治疗进展,Ph+白血病的治疗仍然很复杂,在治疗过程中会出现特定的耐药突变,而且由于CML干细胞在酪氨酸激酶抑制剂(TKIs)的长期治疗下仍然存在,大多数患者需要终身治疗。BCR::ABL1特异性TKIs与影响许多患者生活质量的慢性毒性相关,但也可能导致更严重的肺部和心血管并发症。剂量优化正越来越多地用于控制副作用和维持 CML 患者的分子反应。在此,我们将回顾 BCR::ABL1特异性 TKIs 的发展历程,从 1996 年发现伊马替尼到最近的第二代和第三代 TKIs 以及新出现的专门针对 ABL 肉豆蔻酰口袋(STAMP)的抑制剂。我们还将评估目前治疗BCR::ABL1阳性白血病的证据,包括最佳反应CP-CML患者停用TKI的情况。
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引用次数: 0
From precision medicine to precision care: Choosing and using precision medicine in the context of multimorbidity. 从精准医疗到精准护理:在多发病背景下选择和使用精准医疗
Pub Date : 2023-02-21 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.8
Arlene S Bierman, Bridget T Burke, Leeann N Comfort, Maya Gerstein, Nora M Mueller, Craig A Umscheid

Rapid advances in precision medicine promise dramatic reductions in morbidity and mortality for a growing array of conditions. To realize the benefits of precision medicine and minimize harm, it is necessary to address real-world challenges encountered in translating this research into practice. Foremost among these is how to choose and use precision medicine modalities in real-world practice by addressing issues related to caring for the sizable proportion of people living with multimorbidity. Precision medicine needs to be delivered in the broader context of precision care to account for factors that influence outcomes for specific therapeutics. Precision care integrates a person-centered approach with precision medicine to inform decision making and care planning by taking multimorbidity, functional status, values, goals, preferences, social and societal context into account. Designing dissemination and implementation of precision medicine around precision care would improve person-centered quality and outcomes of care, target interventions to those most likely to benefit thereby improving access to new therapeutics, minimize the risk of withdrawal from the market from unanticipated harms of therapy, and advance health equity by tailoring interventions and care to meet the needs of diverse individuals and populations. Precision medicine delivered in the context of precision care would foster respectful care aligned with preferences, values, and goals, engendering trust, and providing needed information to make informed decisions. Accelerating adoption requires attention to the full continuum of translational research: developing new approaches, demonstrating their usefulness, disseminating and implementing findings, while engaging patients throughout the process. This encompasses basic science, preclinical and clinical research and implementation into practice, ultimately improving health. This article examines challenges to the adoption of precision medicine in the context of multimorbidity. Although the potential of precision medicine is enormous, proactive efforts are needed to avoid unintended consequences and foster its equitable and effective adoption.

精准医疗的快速发展有望大幅降低越来越多疾病的发病率和死亡率。为了实现精准医疗的好处并最大限度地减少危害,有必要解决在将这项研究转化为实践时遇到的现实挑战。其中最重要的是如何在现实世界的实践中选择和使用精准医疗模式,解决与照顾相当大比例的多重疾病患者有关的问题。精准医学需要在更广泛的精准护理背景下进行,以考虑影响特定治疗结果的因素。精准护理将以人为本的方法与精准医疗相结合,通过考虑多种疾病、功能状态、价值观、目标、偏好、社会和社会背景,为决策和护理规划提供信息。围绕精准护理设计精准医疗的传播和实施,将提高以人为本的护理质量和结果,将干预措施瞄准那些最有可能受益的人,从而改善获得新疗法的机会,最大限度地减少因治疗的意外危害而退出市场的风险,并通过定制干预措施和护理来满足不同个人和人群的需求,从而促进卫生公平。在精准医疗的背景下,精准医疗将促进与偏好、价值观和目标相一致的尊重护理,产生信任,并提供做出明智决策所需的信息。加速采用需要关注转化研究的完整连续性:开发新方法,证明其有效性,传播和实施研究结果,同时在整个过程中吸引患者。这包括基础科学、临床前和临床研究以及付诸实践,最终改善健康。本文探讨了在多病背景下采用精准医学的挑战。虽然精准医疗的潜力是巨大的,但需要积极主动的努力来避免意想不到的后果,并促进其公平和有效的采用。
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引用次数: 0
Introducing Cambridge prisms: Precision medicine. 剑桥棱镜简介:精准医学
Pub Date : 2023-02-14 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.7
Anna F Dominiczak, Sandosh Padmanabhan, Mark Caulfield, Ken Sutherland, Jiguang Wang, Jessica K Jones
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引用次数: 0
Promises and challenges in pharmacoepigenetics. 药物表观遗传学的前景与挑战。
Pub Date : 2023-02-09 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.6
Delaney A Smith, Marie C Sadler, Russ B Altman

Pharmacogenetics, the study of how interindividual genetic differences affect drug response, does not explain all observed heritable variance in drug response. Epigenetic mechanisms, such as DNA methylation, and histone acetylation may account for some of the unexplained variances. Epigenetic mechanisms modulate gene expression and can be suitable drug targets and can impact the action of nonepigenetic drugs. Pharmacoepigenetics is the field that studies the relationship between epigenetic variability and drug response. Much of this research focuses on compounds targeting epigenetic mechanisms, called epigenetic drugs, which are used to treat cancers, immune disorders, and other diseases. Several studies also suggest an epigenetic role in classical drug response; however, we know little about this area. The amount of information correlating epigenetic biomarkers to molecular datasets has recently expanded due to technological advances, and novel computational approaches have emerged to better identify and predict epigenetic interactions. We propose that the relationship between epigenetics and classical drug response may be examined using data already available by (1) finding regions of epigenetic variance, (2) pinpointing key epigenetic biomarkers within these regions, and (3) mapping these biomarkers to a drug-response phenotype. This approach expands on existing knowledge to generate putative pharmacoepigenetic relationships, which can be tested experimentally. Epigenetic modifications are involved in disease and drug response. Therefore, understanding how epigenetic drivers impact the response to classical drugs is important for improving drug design and administration to better treat disease.

药物遗传学是一门研究个体间遗传差异如何影响药物反应的学科,但它并不能解释所有观察到的药物反应遗传差异。表观遗传学机制,如 DNA 甲基化和组蛋白乙酰化,可能是部分无法解释的差异的原因。表观遗传机制可调节基因表达,可成为合适的药物靶点,并可影响非表观遗传药物的作用。药物表观遗传学是研究表观遗传变异与药物反应之间关系的领域。这方面的研究主要集中在以表观遗传机制为靶点的化合物上,这些化合物被称为表观遗传药物,用于治疗癌症、免疫紊乱和其他疾病。一些研究还表明,表观遗传在经典药物反应中也发挥着作用;然而,我们对这一领域知之甚少。由于技术的进步,表观遗传生物标志物与分子数据集相关联的信息量最近有所扩大,而且出现了新的计算方法来更好地识别和预测表观遗传相互作用。我们建议利用现有数据研究表观遗传学与经典药物反应之间的关系,具体方法是:(1)找到表观遗传变异区域;(2)精确定位这些区域内的关键表观遗传生物标志物;(3)将这些生物标志物映射到药物反应表型上。这种方法扩展了现有知识,产生了假定的药物表观遗传学关系,并可对其进行实验测试。表观遗传修饰与疾病和药物反应有关。因此,了解表观遗传驱动因素如何影响对经典药物的反应,对于改进药物设计和用药以更好地治疗疾病非常重要。
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引用次数: 0
Mendelian randomization as a tool to inform drug development using human genetics. 孟德尔随机化作为一种工具,为利用人类遗传学进行药物开发提供信息
Pub Date : 2023-02-08 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.5
Iyas Daghlas, Dipender Gill

Drug development is essential to the advancement of human health, however, the process is slow, costly, and at high risk of failure at all stages. A promising strategy for expediting and improving the probability of success in the drug development process is the use of naturally randomized human genetic variation for drug target identification and validation. These data can be harnessed using the Mendelian randomization (MR) analytic paradigm to proxy the lifelong consequences of genetic perturbations of drug targets. In this review, we discuss the myriad applications of the MR paradigm for human drug target identification and validation. We review the methodology and applications of MR, key limitations of MR, and potential future opportunities for research. Throughout the review, we refer to illustrative examples of MR analyses investigating the consequences of genetic inhibition of interleukin 6 signaling which, in some cases, have anticipated results from randomized controlled trials. As human genetic data become more widely available, we predict that MR will serve as a key pillar of support for drug development efforts.

药物开发对促进人类健康至关重要,然而,药物开发过程缓慢、成本高昂,而且在各个阶段都有很高的失败风险。利用自然随机的人类基因变异来识别和验证药物靶点,是加快药物开发过程并提高成功概率的一种可行策略。这些数据可以利用孟德尔随机化(MR)分析范式来模拟药物靶点基因扰动的终身后果。在本综述中,我们将讨论 MR 范式在人类药物靶点鉴定和验证中的大量应用。我们回顾了 MR 的方法和应用、MR 的主要局限性以及未来潜在的研究机会。在整篇综述中,我们引用了研究白细胞介素 6 信号转导基因抑制后果的 MR 分析示例,在某些情况下,这些分析已经预示了随机对照试验的结果。随着人类基因数据的普及,我们预测 MR 将成为支持药物开发工作的重要支柱。
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引用次数: 0
Precision diagnostics in children. 儿童精准诊断
Pub Date : 2023-02-03 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.4
Paul Dimitri

Medical practice is transforming from a reactive to a pro-active and preventive discipline that is underpinned by precision medicine. The advances in technologies in such fields as genomics, proteomics, metabolomics, transcriptomics and artificial intelligence have resulted in a paradigm shift in our understanding of specific diseases in childhood, greatly enhanced by our ability to combine data from changes within cells to the impact of environmental and population changes. Diseases in children have been reclassified as we understand more about their genomic origin and their evolution. Genomic discoveries, additional 'omics' data and advances such as optical genome mapping have driven rapid improvements in the precision and speed of diagnoses of diseases in children and are now being incorporated into newborn screening, have improved targeted therapies in childhood and have supported the development of predictive biomarkers to assess therapeutic impact and determine prognosis in congenital and acquired diseases of childhood. New medical device technologies are facilitating data capture at a population level to support higher diagnostic accuracy and tailored therapies in children according to predicted population outcome, and digital ecosystems now tailor therapies and provide support for their specific needs. By capturing biological and environmental data as early as possible in childhood, we can understand factors that predict disease or maintain health and track changes across a more extensive longitudinal path. Data from multiple health and external sources over long-time periods starting from birth or even in the in utero environment will provide further clarity about how to sustain health and prevent or predict disease. In this respect, we will not only use data to diagnose disease, but precision diagnostics will aid the 'diagnosis of good health'. The principle of 'start early and change more' will thus underpin the value of applying a personalised medicine approach early in life.

医疗实践正在从被动反应转变为以精准医疗为基础的主动预防学科。基因组学、蛋白质组学、代谢组学、转录组学和人工智能等领域技术的进步,使我们对儿童特定疾病的认识发生了范式转变,我们将细胞内变化数据与环境和人口变化影响数据相结合的能力大大增强。随着我们对儿童疾病的基因组起源和演变有了更多的了解,儿童疾病也被重新分类。基因组学的发现、更多的 "全息 "数据以及光学基因组图谱等技术的进步,推动了儿童疾病诊断的精确度和速度的快速提高,目前已被纳入新生儿筛查,改善了儿童的靶向治疗,并支持了预测性生物标志物的开发,以评估治疗效果并确定儿童先天性和后天性疾病的预后。新的医疗设备技术正在促进人口层面的数据采集,以支持更高的诊断准确性,并根据预测的人口结果为儿童量身定制治疗方案。通过尽早获取儿童时期的生物和环境数据,我们可以了解预测疾病或维持健康的因素,并在更广泛的纵向路径中跟踪变化。从出生开始,甚至从子宫内环境开始,长期从多种健康和外部来源获取数据,将进一步明确如何保持健康、预防或预测疾病。在这方面,我们不仅要利用数据来诊断疾病,精准诊断还将有助于 "诊断健康"。因此,"早开始,多改变 "的原则将巩固在生命早期应用个性化医疗方法的价值。
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引用次数: 0
Clinical application of circulating cell-free lymphoma DNA for fast and precise diagnosis of Burkitt lymphoma: Precision medicine for sub-Saharan Africa. 循环无细胞淋巴瘤DNA在快速准确诊断伯基特淋巴瘤中的临床应用:撒哈拉以南非洲地区的精准医学
Pub Date : 2023-01-13 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2023.1
Clara Chamba, Sam M Mbulaiteye, Emmanuel Balandya, Anna Schuh

Burkitt lymphoma (BL) has a cure rate of around 95% when treated with chemo-immunotherapy that is standard of care in high-income countries (Minard-Colin et al., 2020, New England Journal of Medicine 382, 2207-2219), but currently, more than 50% of children and young adults with endemic BL (Epstein Barr virus driven BL) in sub-Saharan Africa (SSA) do not survive. Treatment for BL is largely free of charge, but there is limited access to reliable diagnostic services leading to significant delays and misdiagnoses. Innovations in histopathology such as whole slide imaging and the use of novel diagnostic approaches, in particular using circulating cell-free viral and/or lymphoma DNA (liquid biopsy), could increase access to timely and reliable diagnosis and improve outcomes in SSA.

伯基特淋巴瘤(Burkitt lymphoma,BL)采用化疗免疫疗法治疗时,治愈率约为 95%,这在高收入国家是标准疗法(Minard-Colin 等人,2020 年,《新英格兰医学杂志》,382, 2207-2219),但目前在撒哈拉以南非洲地区(SSA),50% 以上的地方性伯基特淋巴瘤(Epstein Barr 病毒驱动的伯基特淋巴瘤)患儿和年轻成人无法存活。BL的治疗基本上是免费的,但获得可靠诊断服务的机会有限,导致了严重的延误和误诊。组织病理学方面的创新,如全切片成像和新型诊断方法的使用,特别是使用循环无细胞病毒和/或淋巴瘤 DNA(液体活检),可以增加撒哈拉以南非洲地区获得及时可靠诊断的机会,并改善治疗效果。
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引用次数: 0
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Cambridge prisms, Precision medicine
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