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COVID-19 host genetics and ABO blood group susceptibility. 新冠肺炎宿主基因与ABO血型易感性
Pub Date : 2023-01-10 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.12
David Ellinghaus

Twenty-five susceptibility loci for SARS-CoV-2 infection and/or COVID-19 disease severity have been identified in the human genome by genome-wide association studies, and the most frequently replicated genetic findings for susceptibility are genetic variants at the ABO gene locus on chromosome 9q34.2, which is supported by the association between ABO blood group distribution and COVID-19. The ABO blood group effect appears to influence a variety of disease conditions and pathophysiological mechanisms associated with COVID-19. Transmission models for SARS-CoV-2 combined with observational public health and genome-wide data from patients and controls, as well as receptor binding experiments in cell lines and human samples, indicate that there may be a reduction or slowing of infection events by up to 60% in certain ABO blood group constellations of index and contact person in the early phase of a SARS-CoV-2 outbreak. The strength of the ABO blood group effect on reducing infection rates further depends on the distribution of the ABO blood groups in the respective population and the proportion of blood group O in that population. To understand in detail the effect of ABO blood groups on COVID-19, further studies are needed in relation to different demographic characteristics, but also in relation to recent data on reinfection with new viral variants and in the context of the human microbiome.

通过全基因组关联研究,已在人类基因组中确定了严重急性呼吸系统综合征冠状病毒2型感染和/或新冠肺炎疾病严重程度的20个易感基因座,最常见的易感基因发现是染色体9q34.2上ABO基因座的遗传变异,这得到了ABO血型分布与新冠肺炎之间关联的支持。ABO血型效应似乎影响了与新冠肺炎相关的各种疾病状况和病理生理机制。严重急性呼吸系统综合征冠状病毒2型的传播模型,结合来自患者和对照组的观察性公共卫生和全基因组数据,以及细胞系和人类样本中的受体结合实验,表明在严重急性呼吸系综合征新冠病毒2型爆发的早期阶段,某些ABO血型的指标和接触者群体的感染事件可能会减少或减缓60%。ABO血型在降低感染率方面的作用的强度进一步取决于ABO血型的分布在相应人群中以及O血型在该人群中的比例。为了详细了解ABO血型对新冠肺炎的影响,需要对不同的人口统计学特征进行进一步研究,但也需要对新病毒变体再次感染的最新数据和人类微生物组进行进一步研究。
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引用次数: 0
Advancing Precision Medicine in Paediatrics: Past, present and future. 推进儿科精准医学;过去、现在和未来
Pub Date : 2023-01-10 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.14
Abdelbaset Elzagallaai, Charlotte Barker, Tamorah Lewis, Ronald Cohn, Michael Rieder

Precision Medicine is an approach to disease treatment and prevention taking into account individual genetic, environmental, therapeutic and lifestyle variability for each person. This holistic approach to therapeutics is intended to enhance drug efficacy and safety not only across healthcare systems but for individual patients. While weight and to some extent gestational age have been considered in determining drug dosing in children, historically other factors including genetic variability have not been factored into therapeutic decision making. As our knowledge of the role of ontogeny and genetics in determining drug efficacy and safety has expanded, these insights have provided new opportunities to apply principles of Precision Medicine to the care of infants, children and youth. These opportunities are most likely to be achieved first in select sub-groups of children. While there are many challenges to the successful implementation of Precision Medicine in children including the need to ensure that Precision Medicine enhances rather than reduces equity in children's health care rather, there are many more opportunities. Research, advocacy, planning and teamwork are required to move Precision Medicine forward in children in pursuit of the common goal of safe and effective drug therapy.

精准医学是一种考虑到每个人的遗传、环境、治疗和生活方式等个体差异的疾病治疗和预防方法。这种全面的治疗方法旨在提高药物的疗效和安全性,不仅适用于整个医疗系统,也适用于个体患者。虽然在确定儿童用药剂量时考虑了体重,在一定程度上也考虑了胎龄,但从历史上看,包括遗传变异在内的其他因素并没有被纳入治疗决策的考虑范围。随着我们对本体和遗传学在决定药物疗效和安全性方面的作用的认识不断加深,这些见解为将精准医学原则应用于婴幼儿和青少年的治疗提供了新的机遇。这些机会最有可能首先在特定的儿童亚群中实现。虽然在儿童中成功实施精准医疗面临着许多挑战,包括需要确保精准医疗能够提高而不是降低儿童医疗保健的公平性,但同时也存在着更多的机遇。为实现安全有效的药物治疗这一共同目标,需要通过研究、宣传、规划和团队合作来推动精准医学在儿童中的应用。
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引用次数: 0
Editorial on polygenic risk scores -colloquium held at the Centre for Personalised Medicine, Oxford 关于多基因风险评分的社论-在牛津个性化医学中心举行的讨论会
Pub Date : 2023-01-01 DOI: 10.1017/pcm.2023.22
Padraig Dixon, Sarah Briggs, Anneke Lucassen
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引用次数: 0
Delivery of Precision Medicine - Cambridge Prisms: Precision Medicine Webinar Event Transcript 交付精准医学-剑桥棱镜:精准医学网络研讨会事件记录
Pub Date : 2023-01-01 DOI: 10.1017/pcm.2023.21
Munir Pirmohamed, Matt Prime, Dianne Nicol, Bass Hassan, Harper Vansteenhouse, Anna Dominiczak, Laetitia Beck, Jessica K. Jones
An abstract is not available for this content so a preview has been provided. As you have access to this content, a full PDF is available via the ‘Save PDF’ action button.
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引用次数: 0
Applications of artificial intelligence in dementia research. 人工智能在痴呆症研究中的应用
Pub Date : 2022-12-06 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.10
Kelvin K F Tsoi, Pingping Jia, N Maritza Dowling, Jodi R Titiner, Maude Wagner, Ana W Capuano, Michael C Donohue

More than 50 million older people worldwide are suffering from dementia, and this number is estimated to increase to 150 million by 2050. Greater caregiver burdens and financial impacts on the healthcare system are expected as we wait for an effective treatment for dementia. Researchers are constantly exploring new therapies and screening approaches for the early detection of dementia. Artificial intelligence (AI) is widely applied in dementia research, including machine learning and deep learning methods for dementia diagnosis and progression detection. Computerized apps are also convenient tools for patients and caregivers to monitor cognitive function changes. Furthermore, social robots can potentially provide daily life support or guidance for the elderly who live alone. This review aims to provide an overview of AI applications in dementia research. We divided the applications into three categories according to different stages of cognitive impairment: (1) cognitive screening and training, (2) diagnosis and prognosis for dementia, and (3) dementia care and interventions. There are numerous studies on AI applications for dementia research. However, one challenge that remains is comparing the effectiveness of different AI methods in real clinical settings.

全世界有 5000 多万老年人患有痴呆症,预计到 2050 年,这一数字将增至 1.5 亿。在我们等待有效治疗痴呆症的过程中,护理人员的负担和对医疗保健系统的经济影响预计会越来越大。研究人员正在不断探索早期检测痴呆症的新疗法和筛查方法。人工智能(AI)被广泛应用于痴呆症研究,包括用于痴呆症诊断和进展检测的机器学习和深度学习方法。计算机应用程序也是患者和护理人员监测认知功能变化的便捷工具。此外,社交机器人有可能为独居老人提供日常生活支持或指导。本综述旨在概述人工智能在痴呆症研究中的应用。我们根据认知障碍的不同阶段将应用分为三类:(1) 认知筛查和训练,(2) 痴呆症的诊断和预后,以及 (3) 痴呆症护理和干预。关于人工智能在痴呆症研究中的应用的研究不胜枚举。然而,比较不同人工智能方法在实际临床环境中的有效性仍是一项挑战。
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引用次数: 0
Precision mitochondrial medicine. 精准线粒体医学
Pub Date : 2022-11-15 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.8
Patrick F Chinnery

Mitochondria play a key role in cell homeostasis as a major source of intracellular energy (adenosine triphosphate), and as metabolic hubs regulating many canonical cell processes. Mitochondrial dysfunction has been widely documented in many common diseases, and genetic studies point towards a causal role in the pathogenesis of specific late-onset disorder. Together this makes targeting mitochondrial genes an attractive strategy for precision medicine. However, the genetics of mitochondrial biogenesis is complex, with over 1,100 candidate genes found in two different genomes: the nuclear DNA and mitochondrial DNA (mtDNA). Here, we review the current evidence associating mitochondrial genetic variants with distinct clinical phenotypes, with some having clear therapeutic implications. The strongest evidence has emerged through the investigation of rare inherited mitochondrial disorders, but genome-wide association studies also implicate mtDNA variants in the risk of developing common diseases, opening to door for the incorporation of mitochondrial genetic variant analysis in population disease risk stratification.

线粒体作为细胞内能量(三磷酸腺苷,ATP)的主要来源,以及调节许多典型细胞过程的代谢中枢,在细胞稳态中发挥着关键作用。线粒体功能障碍已被广泛记录在许多常见疾病中,遗传学研究指出其在特定晚发性疾病的发病机制中起着因果作用。这使得靶向线粒体基因成为精准医学的一种有吸引力的策略。然而,线粒体生物发生的遗传学是复杂的,在两个不同的基因组中发现了1100多个候选基因:核DNA和线粒体DNA(mtDNA)。在这里,我们回顾了目前将线粒体遗传变异与不同临床表型联系起来的证据,其中一些具有明确的治疗意义。通过对罕见遗传性线粒体疾病的调查,出现了最有力的证据,但全基因组关联研究也表明mtDNA变异与患常见疾病的风险有关,为将线粒体遗传变异分析纳入人群疾病风险分层打开了大门。
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引用次数: 0
Artificial intelligence for early detection of renal cancer in computed tomography: A review. 人工智能用于癌症计算机断层扫描早期检测的研究进展
Pub Date : 2022-11-11 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.9
William C McGough, Lorena E Sanchez, Cathal McCague, Grant D Stewart, Carola-Bibiane Schönlieb, Evis Sala, Mireia Crispin-Ortuzar

Renal cancer is responsible for over 100,000 yearly deaths and is principally discovered in computed tomography (CT) scans of the abdomen. CT screening would likely increase the rate of early renal cancer detection, and improve general survival rates, but it is expected to have a prohibitively high financial cost. Given recent advances in artificial intelligence (AI), it may be possible to reduce the cost of CT analysis and enable CT screening by automating the radiological tasks that constitute the early renal cancer detection pipeline. This review seeks to facilitate further interdisciplinary research in early renal cancer detection by summarising our current knowledge across AI, radiology, and oncology and suggesting useful directions for future novel work. Initially, this review discusses existing approaches in automated renal cancer diagnosis, and methods across broader AI research, to summarise the existing state of AI cancer analysis. Then, this review matches these methods to the unique constraints of early renal cancer detection and proposes promising directions for future research that may enable AI-based early renal cancer detection via CT screening. The primary targets of this review are clinicians with an interest in AI and data scientists with an interest in the early detection of cancer.

每年有超过 10 万人死于肾癌,而肾癌主要是通过腹部计算机断层扫描(CT)发现的。CT 筛查可能会提高早期肾癌的检出率,并改善总体存活率,但预计其经济成本过高。鉴于人工智能(AI)的最新进展,有可能通过自动化构成早期肾癌检测管道的放射学任务来降低 CT 分析的成本并实现 CT 筛查。本综述旨在通过总结我们目前在人工智能、放射学和肿瘤学方面的知识,并为未来的新工作提出有用的方向,从而促进早期肾癌检测方面的跨学科研究。首先,本综述讨论了现有的肾癌自动诊断方法以及更广泛的人工智能研究方法,以总结人工智能癌症分析的现有状况。然后,本综述将这些方法与早期肾癌检测的独特限制相匹配,并为未来的研究提出了有希望的方向,从而通过 CT 筛查实现基于人工智能的早期肾癌检测。本综述的主要对象是对人工智能感兴趣的临床医生和对癌症早期检测感兴趣的数据科学家。
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引用次数: 0
Impact of structural racism on inclusion and diversity in precision oncology: A scoping and critical review of the literature. 结构性种族主义对精确肿瘤学的包容性和多样性的影响:对文献的范围和批判性回顾
Pub Date : 2022-10-26 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.4
Lester D Geneviève, Bernice S Elger, Tenzin Wangmo

Inclusion and diversity in precision oncology are essential in reducing cancer disparities among racial and ethnic groups. However, present studies have favored the recruitment and participation of Whites, with limited applicability of their results to minority groups. Many reasons for their underrepresentation are downstream manifestations of structural racism. Therefore, this scoping review provides a precise mapping of recruitment and participation barriers for minorities in precision oncology that are associated with structural racism, including a critical appraisal of how disciplinary norms, paradigms, and tools used therein could inadvertently contribute to unforeseen inclusion and diversity challenges. Empirical and theoretical publications from Web of Science and PubMed were searched and analyzed to identify recruitment and participation barriers for minorities in precision oncology. In addition, using the public health critical race praxis (PHCRP) as guiding analytical framework, empirical studies were analyzed to identify unforeseen barriers resulting from simplification processes, assumptions, norms, paradigms, and tools used during the research process. One-hundred thirty-five barriers to recruitment and participation were identified or reported in included publications. They were subsequently categorized as being a manifestation of one of the following forms of racism, namely internalized, interpersonal, institutional, and structural racism. The PCHRP analysis revealed four additional factors to be considered in precision oncology studies in ensuring appropriate representation of their study populations. Future interventions aimed at reducing health disparities should focus predominantly on barriers associated with structural and institutional racism, which should then have ripple effects on other forms of racism. Importantly, the four factors identified through the PHCRP framework could further explain the lower participation rates of minorities in precision oncology and related activities. Therefore, they should be given due consideration by all stakeholders involved in the precision oncology ecosystem, from researchers and healthcare professionals to policy-makers, research ethics committees, and funders.

精确肿瘤学的包容性和多样性对于减少种族和族裔群体之间的癌症差异至关重要。然而,目前的研究倾向于白人的招募和参与,其结果对少数群体的适用性有限。她们代表性不足的许多原因是结构性种族主义的下游表现。因此,本综述为精准肿瘤学中与结构性种族主义相关的少数族裔招募和参与障碍提供了精确的地图,包括对其中使用的学科规范、范式和工具如何在无意中促成不可预见的包容性和多样性挑战的批判性评估。方法检索Web of Science和PubMed的实证和理论出版物,并对其进行分析,以确定少数民族在精确肿瘤学领域的招募和参与障碍。此外,利用公共卫生关键种族实践(PHCRP)作为指导分析框架,对实证研究进行了分析,以确定在研究过程中使用的简化过程、假设、规范、范式和工具所造成的不可预见的障碍。从研究人员和医疗保健专业人员到政策制定者、研究委员会和资助者,他们应该是个体的。
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引用次数: 0
Maturing pharmacogenomic factors deliver improvements and cost efficiencies. 成熟的药物基因组因素带来改进和成本效益
Pub Date : 2022-10-06 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.3
Joseph P Jarvis, Scott E Megill, Peter Silvester, Jeffrey A Shaman

An ever-expanding annotation of the human genome sequence continues to promise a new era of precision medicine. Advances in knowledge management and the ability to leverage genetic information to make clinically relevant, predictive, diagnostic, and targeted therapeutic choices offer the ability to improve patient outcomes and reduce the overall cost of healthcare. However, numerous barriers have resulted in a modest start to the clinical use of genetics at scale. Examples of successful deployments include oncologic disease treatment with targeted prescribing; however, even in these cases, genome-informed decision-making has yet to achieve standard of care in most major healthcare systems. In the last two decades, advances in genetic testing, therapeutic coverage, and clinical decision support have resulted in early-stage adoption of pharmacogenomics - the use of genetic information to routinely determine the safety and efficacy profile of specific medications for individuals. Here, through their complicated histories, we review the current state of pharmacogenomic testing technologies, the information tools that can unlock clinical utility, and value-driving implementation strategies that represent the future of pharmacogenomics-enabled healthcare decision-making. We conclude with real-world economic and clinical outcomes from a full-scale deployment and ultimately provide insight into potential tipping points for global adoption, including recent lessons from the rapid scale-up of high-volume test delivery during the global SARS-CoV2 epidemic.

对人类基因组序列的不断扩展的注释继续预示着精准医学的新时代。知识管理的进步以及利用遗传信息做出临床相关、预测性、诊断性和有针对性的治疗选择的能力,提供了改善患者预后和降低医疗保健总体成本的能力。然而,许多障碍导致遗传学在临床上的大规模应用起步缓慢。成功部署的例子包括通过有针对性的处方进行肿瘤学疾病治疗;然而,即使在这些情况下,在大多数主要的医疗保健系统中,基于基因组的决策也尚未达到护理标准。在过去的二十年里,基因检测、治疗覆盖率和临床决策支持方面的进步导致了药物基因组学的早期采用,即利用基因信息定期确定特定药物对个人的安全性和有效性。在这里,通过它们复杂的历史,我们回顾了药物基因组学测试技术的现状,可以释放临床效用的信息工具,以及代表药物基因组学支持的医疗决策未来的价值驱动实施策略。我们以全面部署的现实世界经济和临床结果作为结论,并最终深入了解全球采用的潜在临界点,包括在全球严重急性呼吸系统综合征冠状病毒2型疫情期间快速扩大大规模检测的最新经验教训。卫生系统、支付者和人口管理者可以利用这项研究作为指导性证据,直接支持立即采取行动遏制医疗成本上涨的趋势。这篇论文由一个关键的中心人物编码,有望成为推动基因科学领域成为国际临床护理标准的重要参考。将遗传学作为护理标准有可能为所有利益相关者提供一个低成本的解决方案,以解决健康状况不佳和医疗成本上升的问题。
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引用次数: 0
The environmental impact of data-driven precision medicine initiatives. 数据驱动的精准医疗举措对环境的影响
Pub Date : 2022-09-26 eCollection Date: 2023-01-01 DOI: 10.1017/pcm.2022.1
Gabrielle Samuel, Anneke M Lucassen

Opportunities offered by precision medicine have long been promised in the medical and health literature. However, precision medicine - and the methodologies and approaches it relies on - also has adverse environmental impacts. As research into precision medicine continues to expand, there is a compelling need to consider these environmental impacts and develop means to mitigate them. In this article, we review the adverse environmental impacts associated with precision medicine, with a particular focus on those associated with its underlying need for data-intensive approaches. We illustrate the importance of considering the environmental impacts of precision medicine and describe the adverse health outcomes that are associated with climate change. We follow this with a description of how these environmental impacts are being addressed in both the health and data-driven technology sector. We then describe the (scant) literature on environmental impacts associated with data-driven precision medicine specifically. We finish by highlighting various environmental considerations that precision medicine researchers, and the field more broadly, should take into account.

精准医学提供的机会在医学和健康文献中早已得到承诺。然而,精准医学及其所依赖的方法和方法也会对环境产生不利影响。随着精准医学研究的不断扩大,迫切需要考虑这些环境影响,并制定减轻这些影响的方法。在这篇文章中,我们回顾了精准医疗对环境的不利影响,特别关注那些与数据密集型方法的潜在需求相关的影响。我们说明了考虑精准医疗对环境影响的重要性,并描述了与气候变化相关的不良健康后果。接下来,我们将描述健康和数据驱动技术部门如何应对这些环境影响。然后,我们具体描述了与数据驱动的精准医学相关的环境影响(很少)文献。最后,我们强调了精准医学研究人员以及更广泛的领域应该考虑的各种环境因素。他们的工作对健康的影响。相对简单的干预措施,如考虑数据存储、处理和分析的地点、方式和时间,可以对这些活动的环境足迹产生重大影响。我们希望我们的文章会引起包括政策制定者在内的广泛精准医学专家的兴趣。
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引用次数: 0
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Cambridge prisms, Precision medicine
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