Pub Date : 2021-10-18DOI: 10.33774/chemrxiv-2021-38h45
Jacob O. Rothbaum, A. Motta, Yosi Kratish, T. Marks
C-H activation and functionalization of pyridinoid azines is a key transformation forthe synthesis of many natural products, pharmaceuticals, and materials. Reflecting the azinyl nitrogen lone-pair steric repulsion, tendency to irreversibly bind to metal ion catalysts, and the electron-deficient nature of pyridine, C-H functionalization at the important a-position remains challenging. Thus, the development of earth abundant catalysts for the a-selective mono-functionalization of azines is a crucial hurdle for modern chemical synthesis. Here, the selective organolanthanide catalyzed a-mono-borylation of a diverse series of pyridines is reported, affording a valuable precursor for cross-coupling reactions. Experimental and theoretical mechanistic evidence support the formation of a C-H activated η2-lanthanide-azine complex, followed by intermolecular a-mono-borylation via σ-bond metathesis. Notably, varying the lanthanide identity and substrate electronics promotes chemodivergence of the catalytic selectivity: smaller/more electrophilic lanthanide3+ ions and electron-rich substrates favor selective a-C-H functionalization, whereas larger/less electrophilic lanthanide3+ 1 ions and electron poor substrates favor selective B-N bond-forming 1,2-dearomatization. Such organolanthanide series catalytic chemodivergence is, to our knowledge, unprecedented.
{"title":"Chemodivergent Organolanthanide Catalyzed C-H a-Mono-1 Borylation of Azines","authors":"Jacob O. Rothbaum, A. Motta, Yosi Kratish, T. Marks","doi":"10.33774/chemrxiv-2021-38h45","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-38h45","url":null,"abstract":"C-H activation and functionalization of pyridinoid azines is a key transformation forthe synthesis of many natural products, pharmaceuticals, and materials. Reflecting the azinyl nitrogen lone-pair steric repulsion, tendency to irreversibly bind to metal ion catalysts, and the electron-deficient nature of pyridine, C-H functionalization at the important a-position remains challenging. Thus, the development of earth abundant catalysts for the a-selective mono-functionalization of azines is a crucial hurdle for modern chemical synthesis. Here, the selective organolanthanide catalyzed a-mono-borylation of a diverse series of pyridines is reported, affording a valuable precursor for cross-coupling reactions. Experimental and theoretical mechanistic evidence support the formation of a C-H activated η2-lanthanide-azine complex, followed by intermolecular a-mono-borylation via σ-bond metathesis. Notably, varying the lanthanide identity and substrate electronics promotes chemodivergence of the catalytic selectivity: smaller/more electrophilic lanthanide3+ ions and electron-rich substrates favor selective a-C-H functionalization, whereas larger/less electrophilic lanthanide3+ 1 ions and electron poor substrates favor selective B-N bond-forming 1,2-dearomatization. Such organolanthanide series catalytic chemodivergence is, to our knowledge, unprecedented.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46994041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-18DOI: 10.33774/chemrxiv-2021-gw0h4
M. Shohel, Jack A. Smith, Margaret A. Carolan, T. Forbes
Coagulation processes within water treatment plays an important role in contaminant removal and aluminum-oxo Keggin polycations are proved to be an effective coagulating agents. Previous work demonstrated that heteroatom substitution within the Keggin-type polycation ε-Al13 to form ε-GaAl12 and ε-GeAl12 can enhance removal of bacteria, DOC, and turbidity from wastewater. Additional hydrolysis of the ε-Al13 species to form larger Al30 species has also been shown to improve coagulation, but this aspect has not been evaluated for the ε-GaAl12 and ε-GeAl12 systems. In the current study, hydrolysis of ε-Al13, ε-GaAl12 and ε-GeAl12 was promoted through hydrothermal aging to evaluate the overall solution stability/behavior and water treatment efficiency. Turbidity measurement of aged solution indicated that Ga substituted aluminum-oxo Keggin polycations remain stable in solution and DLS studies demonstrated greater diversity in particle sizes within the system. Additional thermogravimetric analyses of metal hydroxide precipitates formed from the aging studies indicate that the GaAl12 system behaves more like an amorphous Al(OH)3 phase, which has higher solubility than other aluminum hydroxide phases. Hydrothermal aging did not significantly change %DOC removal as all solution showed high efficiency for removal across a range of pH values. GaAl12 solutions demonstrated good turbidity removal efficiency in all pH range, with enhanced performance at pH 5. The study suggests that larger, relatively stable oligomers do exist within the aged GaAl12 solutions that may contribute to enhanced contaminant removal in a similar manner to what is observed within the PACl-Al30 coagulant.
{"title":"Thermal aging of heteroatom substituted Keggin type aluminum oxo polycation solutions: Aggregation behavior and impacts on dissolved organic carbon and turbidity removal","authors":"M. Shohel, Jack A. Smith, Margaret A. Carolan, T. Forbes","doi":"10.33774/chemrxiv-2021-gw0h4","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-gw0h4","url":null,"abstract":"Coagulation processes within water treatment plays an important role in contaminant removal and aluminum-oxo Keggin polycations are proved to be an effective coagulating agents. Previous work demonstrated that heteroatom substitution within the Keggin-type polycation ε-Al13 to form ε-GaAl12 and ε-GeAl12 can enhance removal of bacteria, DOC, and turbidity from wastewater. Additional hydrolysis of the ε-Al13 species to form larger Al30 species has also been shown to improve coagulation, but this aspect has not been evaluated for the ε-GaAl12 and ε-GeAl12 systems. In the current study, hydrolysis of ε-Al13, ε-GaAl12 and ε-GeAl12 was promoted through hydrothermal aging to evaluate the overall solution stability/behavior and water treatment efficiency. Turbidity measurement of aged solution indicated that Ga substituted aluminum-oxo Keggin polycations remain stable in solution and DLS studies demonstrated greater diversity in particle sizes within the system. Additional thermogravimetric analyses of metal hydroxide precipitates formed from the aging studies indicate that the GaAl12 system behaves more like an amorphous Al(OH)3 phase, which has higher solubility than other aluminum hydroxide phases. Hydrothermal aging did not significantly change %DOC removal as all solution showed high efficiency for removal across a range of pH values. GaAl12 solutions demonstrated good turbidity removal efficiency in all pH range, with enhanced performance at pH 5. The study suggests that larger, relatively stable oligomers do exist within the aged GaAl12 solutions that may contribute to enhanced contaminant removal in a similar manner to what is observed within the PACl-Al30 coagulant.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48045592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-07DOI: 10.33774/chemrxiv-2021-pcw03-v2
Xin Yang, Limin Ma, H. Shao, Xia Ling, M. Yao, Guowen Luo, Stefano Scoditti, E. Sicilia, G. Mazzone, Meng Gao, B. Tang
Chemotherapies for cancer treatment usually suffer from poor targeting ability and serious side-effects. To improve the treatment efficiency and reduce side effects, photoactivatable chemotherapy has been recently proposed for precise cancer treatment with high spatiotemporal resolution. However, most photoactivatable prodrugs require decoration by stoichiometric photo-cleavable groups, which are only responsive to ultraviolet irradiation and suffer from low reaction efficiency. To tackle these challenges, we herein propose a bioorthogonal photo-catalytic activation strategy with riboflavin as the catalyst for in situ transformation of prodrug dihydrochelerythrine (DHCHE) prodrug into anti-cancer drug chelerythrine (CHE), which can efficiently kill cancer cells and inhibit in vivo tumor growth under light irradiation. Meanwhile, the photo-catalytic transformation from DHCHE into CHE was in situ monitored by green-to-red fluorescence conversion, which can be used for precise control of the therapeutic dose. The photocatalytic mechanism was also fully explored by means of density functional theory (DFT) calculations. We believe this imaging-guided bioorthogonal photo-catalytic activation strategy is promising for cancer chemotherapy in clinical applications.
{"title":"Bioorthogonal Photo-Catalytic Activation of an Anti-Cancer Prodrug by Riboflavin","authors":"Xin Yang, Limin Ma, H. Shao, Xia Ling, M. Yao, Guowen Luo, Stefano Scoditti, E. Sicilia, G. Mazzone, Meng Gao, B. Tang","doi":"10.33774/chemrxiv-2021-pcw03-v2","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-pcw03-v2","url":null,"abstract":"Chemotherapies for cancer treatment usually suffer from poor targeting ability and serious side-effects. To improve the treatment efficiency and reduce side effects, photoactivatable chemotherapy has been recently proposed for precise cancer treatment with high spatiotemporal resolution. However, most photoactivatable prodrugs require decoration by stoichiometric photo-cleavable groups, which are only responsive to ultraviolet irradiation and suffer from low reaction efficiency. To tackle these challenges, we herein propose a bioorthogonal photo-catalytic activation strategy with riboflavin as the catalyst for in situ transformation of prodrug dihydrochelerythrine (DHCHE) prodrug into anti-cancer drug chelerythrine (CHE), which can efficiently kill cancer cells and inhibit in vivo tumor growth under light irradiation. Meanwhile, the photo-catalytic transformation from DHCHE into CHE was in situ monitored by green-to-red fluorescence conversion, which can be used for precise control of the therapeutic dose. The photocatalytic mechanism was also fully explored by means of density functional theory (DFT) calculations. We believe this imaging-guided bioorthogonal photo-catalytic activation strategy is promising for cancer chemotherapy in clinical applications.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47912759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-05DOI: 10.33774/chemrxiv-2021-00rj4
G. Wood, Irina Terrero Rodriguez, J. Tully, Shayantan Chaudhuri, J. Macpherson
Electrochemical ozone production (EOP) from water is an attractive, green technology for disinfection. Boron doped diamond (BDD) electrodes, grown by chemical vapor deposition (CVD), have been widely adopted for EOP due to their wide anodic window in water and excellent chemical and electrochemical stability. High pressure high temperature (HPHT) synthesis, an alternative growth technique used predominantly for the high-volume synthesis of nitrogen doped diamond microparticles, has been seldom employed for the production of conductive BDD electrodes. In this letter, we demonstrate, for the first time, the use of BDD electrodes fabricated from HPHT conductive BDD microparticles for EOP. The BDD microparticles are first compacted to produce freestanding solid electrodes and then laser micromachined to produce a perforated electrode. The HPHT BDD electrodes are shown to exhibit high EOP, producing 2.23 ± 0.07 mg L-1 of ozone per ampere of current, at consistent levels for a continuous 20 hr period with no drop off in performance.
{"title":"Electrochemical Ozone Generation Using Compacted High Pressure High Temperature Boron Doped Diamond Microparticle Electrodes","authors":"G. Wood, Irina Terrero Rodriguez, J. Tully, Shayantan Chaudhuri, J. Macpherson","doi":"10.33774/chemrxiv-2021-00rj4","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-00rj4","url":null,"abstract":"Electrochemical ozone production (EOP) from water is an attractive, green technology for disinfection. Boron doped diamond (BDD) electrodes, grown by chemical vapor deposition (CVD), have been widely adopted for EOP due to their wide anodic window in water and excellent chemical and electrochemical stability. High pressure high temperature (HPHT) synthesis, an alternative growth technique used predominantly for the high-volume synthesis of nitrogen doped diamond microparticles, has been seldom employed for the production of conductive BDD electrodes. In this letter, we demonstrate, for the first time, the use of BDD electrodes fabricated from HPHT conductive BDD microparticles for EOP. The BDD microparticles are first compacted to produce freestanding solid electrodes and then laser micromachined to produce a perforated electrode. The HPHT BDD electrodes are shown to exhibit high EOP, producing 2.23 ± 0.07 mg L-1 of ozone per ampere of current, at consistent levels for a continuous 20 hr period with no drop off in performance.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49573077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-05DOI: 10.33774/chemrxiv-2021-9l2vn
Chi-Yun Lin, M. Romei, I. Mathews, S. Boxer
The last decades have witnessed an explosion of de novo protein designs with a remarkable range of scaffolds. It remains challenging, however, to design catalytic functions that are competitive with naturally occurring counterparts as well as biomimetic or non-biological catalysts. Although directed evolution often offers efficient solutions, the fitness landscape remains opaque. Green fluorescent protein (GFP), which has revolutionized biological imaging and assays, is one of the most re-designed proteins. While not an enzyme in the conventional sense, GFPs feature competing excited-state decay pathways with the same steric and electrostatic origins as conventional ground-state catalysts, and they exert exquisite control over multiple reaction outcomes through the same principles. Thus, GFP is an “excited-state enzyme”. Herein we show that rationally designed mutants and hybrids that contain environmental mutations and substituted chromophores provide the basis for a quantitative model and prediction that describes the influence of sterics and electrostatics on excited-state catalysis of GFPs. As both perturbations can selectively bias photoisomerization pathways, GFPs with fluorescence quantum yields (FQYs) and photoswitching characteristics tailored for specific applications could be predicted and then demonstrated. The underlying energetic landscape, readily accessible via spectroscopy for GFPs, offers an important missing link in the design of protein function that is generalizable to catalyst design.
{"title":"Energetic basis of excited-state enzyme design and function","authors":"Chi-Yun Lin, M. Romei, I. Mathews, S. Boxer","doi":"10.33774/chemrxiv-2021-9l2vn","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-9l2vn","url":null,"abstract":"The last decades have witnessed an explosion of de novo protein designs with a remarkable range of scaffolds. It remains challenging, however, to design catalytic functions that are competitive with naturally occurring counterparts as well as biomimetic or non-biological catalysts. Although directed evolution often offers efficient solutions, the fitness landscape remains opaque. Green fluorescent protein (GFP), which has revolutionized biological imaging and assays, is one of the most re-designed proteins. While not an enzyme in the conventional sense, GFPs feature competing excited-state decay pathways with the same steric and electrostatic origins as conventional ground-state catalysts, and they exert exquisite control over multiple reaction outcomes through the same principles. Thus, GFP is an “excited-state enzyme”. Herein we show that rationally designed mutants and hybrids that contain environmental mutations and substituted chromophores provide the basis for a quantitative model and prediction that describes the influence of sterics and electrostatics on excited-state catalysis of GFPs. As both perturbations can selectively bias photoisomerization pathways, GFPs with fluorescence quantum yields (FQYs) and photoswitching characteristics tailored for specific applications could be predicted and then demonstrated. The underlying energetic landscape, readily accessible via spectroscopy for GFPs, offers an important missing link in the design of protein function that is generalizable to catalyst design.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43517139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-04DOI: 10.33774/chemrxiv-2021-qlpbp
Zan Yang, Xun Zhang, Yu Jiang, Qiangxiang Ma, S. Liao
The properties of poly(vinyl ether)s (PVEs) are highly dependent on their tacticity, and the appealing thermoplastics features of isotactic PVEs have drawn considerable efforts to develop stereoselective cationic polymerization methods to access this class of polymers. However, re-ported methods that could achieve a high degree of tacticity control are limited to process employing metal-based Lewis acids, and with various limitations on catalyst loading, monomer scope, etc. Here, we introduce a metal-free stereoselective cationic polymerization of vinyl ethers by employing a class of chiral confined Brønsted acids, imidodiphos-phorimidates (IDPis), as the catalyst. This organocatalytic approach features its metal free conditions, high efficiency, high stereoselectivity, single catalyst system, operation simplicity, etc.
{"title":"Metal-Free Stereoselective Cationic Polymerization of Vinyl Ethers by Employing a Confined Brønsted Acid as the Catalyst","authors":"Zan Yang, Xun Zhang, Yu Jiang, Qiangxiang Ma, S. Liao","doi":"10.33774/chemrxiv-2021-qlpbp","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-qlpbp","url":null,"abstract":"The properties of poly(vinyl ether)s (PVEs) are highly dependent on their tacticity, and the appealing thermoplastics features of isotactic PVEs have drawn considerable efforts to develop stereoselective cationic polymerization methods to access this class of polymers. However, re-ported methods that could achieve a high degree of tacticity control are limited to process employing metal-based Lewis acids, and with various limitations on catalyst loading, monomer scope, etc. Here, we introduce a metal-free stereoselective cationic polymerization of vinyl ethers by employing a class of chiral confined Brønsted acids, imidodiphos-phorimidates (IDPis), as the catalyst. This organocatalytic approach features its metal free conditions, high efficiency, high stereoselectivity, single catalyst system, operation simplicity, etc.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47627541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-04DOI: 10.33774/chemrxiv-2021-s62r6
Nahiane Pipaón Fernández, Gregory Gaube, Kyla Woelk, Mathias Burns, D. Leitch
The use of oxygen-based electrophiles in cross-coupling remains challenging for substrates with strong C–O bonds, with few examples that can combine C–O activation with an-other strong-bond activation in tandem. We report the first example of a direct, tandem C–O/C–H activation approach to C–C bond formation using palladium catalysis. This reaction combines C–O oxidative addition at enol pivalates with con-certed metallation deprotonation of functionalized heterocycles to achieve base-free direct C–H alkenylation, with pivalic acid as the only byproduct. Mechanistic studies reveal that the Pd(II) C–O oxidative addition product is the major catalyst resting state, indicating that C–H activation is the turnover-limiting step.
{"title":"Tandem C–O and C–H Activation at Palladium Enables Catalytic Direct C–H Alkenylation with Enol Pivalates","authors":"Nahiane Pipaón Fernández, Gregory Gaube, Kyla Woelk, Mathias Burns, D. Leitch","doi":"10.33774/chemrxiv-2021-s62r6","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-s62r6","url":null,"abstract":"The use of oxygen-based electrophiles in cross-coupling remains challenging for substrates with strong C–O bonds, with few examples that can combine C–O activation with an-other strong-bond activation in tandem. We report the first example of a direct, tandem C–O/C–H activation approach to C–C bond formation using palladium catalysis. This reaction combines C–O oxidative addition at enol pivalates with con-certed metallation deprotonation of functionalized heterocycles to achieve base-free direct C–H alkenylation, with pivalic acid as the only byproduct. Mechanistic studies reveal that the Pd(II) C–O oxidative addition product is the major catalyst resting state, indicating that C–H activation is the turnover-limiting step.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49246588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-04DOI: 10.33774/chemrxiv-2021-r9g8r
F. Berride, Víctor M. Sánchez-Pedregal, B. Dacuña, E. Cabrita, A. Navarro‐Vázquez, R. Weiss, M. Cid
The X-ray crystal structure of the gelator 1,3:2,4-dibenzylidene-D-sorbitol (DBS) is reported here. DBS is an important gelating molecule known for nearly 130 years, that has eluded crystallization until now. The crystal obtained presents an axial stacking of DBS molecules stabilized by both Van der Waals interactions and intermolecular hydrogen bonds of the side chain hydroxyl groups with either neighboring DBS or water molecules. The crystal structure shows definitive evidence for the frequently assumed “butterfly” type aggregation mode and experimentally proves the equatorial placement of the phenyl rings. The conformation of DBS has been analyzed in the crystal structure and compared with that determined in solution through NMR spectroscopy.
{"title":"Conformation and supramolecular arrangement of 1,3:2,4-dibenzyli-dene-D-sorbitol in solution and in single crystals","authors":"F. Berride, Víctor M. Sánchez-Pedregal, B. Dacuña, E. Cabrita, A. Navarro‐Vázquez, R. Weiss, M. Cid","doi":"10.33774/chemrxiv-2021-r9g8r","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-r9g8r","url":null,"abstract":"The X-ray crystal structure of the gelator 1,3:2,4-dibenzylidene-D-sorbitol (DBS) is reported here. DBS is an important gelating molecule known for nearly 130 years, that has eluded crystallization until now. The crystal obtained presents an axial stacking of DBS molecules stabilized by both Van der Waals interactions and intermolecular hydrogen bonds of the side chain hydroxyl groups with either neighboring DBS or water molecules. The crystal structure shows definitive evidence for the frequently assumed “butterfly” type aggregation mode and experimentally proves the equatorial placement of the phenyl rings. The conformation of DBS has been analyzed in the crystal structure and compared with that determined in solution through NMR spectroscopy.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46986914","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-04DOI: 10.33774/chemrxiv-2021-w2c7b
Zhi Li, Philip W. Nega, M. Najeeb, Chaochao Dun, M. Zeller, J. Urban, W. Saidi, Joshua Schrier, A. Norquist, E. Chan
Metal halide perovskite (MHP) derivatives, a promising class of optoelectronic materials, have been synthesized with a range of dimensionalities that govern their optoelectronic properties and determine their applications. We demonstrate a data-driven approach combining active learning and high-throughput experimentation to discover, control, and understand the formation of phases with different dimensionalities in the morpholinium (morph) lead iodide system. Using a robot-assisted workflow, we synthesized and characterized two novel MHP derivatives that have distinct optical properties: a one-dimensional (1D) morphPbI3 phase ([C4H10NO][PbI3]) and a 2D (morph)2PbI4 phase ([C4H10NO]2[PbI4]). To efficiently acquire the data needed to construct a machine learning (ML) model of the reaction conditions where the 1D and 2D phases are formed, data acquisition was guided by a diverse-mini-batch-sampling active learning algorithm, using prediction confidence as a stopping criterion. Querying the ML model uncovered the reaction parameters that have the most significant effects on dimensionality control. Based on these insights, we propose a reaction scheme that rationalizes the formation of different dimensional MHP derivatives in the morph-Pb-I system. The data-driven approach presented here, including the use of additives to manipulate dimensionality, will be valuable for controlling the crystallization of a range of materials over large reaction-composition spaces.
{"title":"Dimensional control over metal halide perovskite crystallization guided by active learning","authors":"Zhi Li, Philip W. Nega, M. Najeeb, Chaochao Dun, M. Zeller, J. Urban, W. Saidi, Joshua Schrier, A. Norquist, E. Chan","doi":"10.33774/chemrxiv-2021-w2c7b","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-w2c7b","url":null,"abstract":"Metal halide perovskite (MHP) derivatives, a promising class of optoelectronic materials, have been synthesized with a range of dimensionalities that govern their optoelectronic properties and determine their applications. We demonstrate a data-driven approach combining active learning and high-throughput experimentation to discover, control, and understand the formation of phases with different dimensionalities in the morpholinium (morph) lead iodide system. Using a robot-assisted workflow, we synthesized and characterized two novel MHP derivatives that have distinct optical properties: a one-dimensional (1D) morphPbI3 phase ([C4H10NO][PbI3]) and a 2D (morph)2PbI4 phase ([C4H10NO]2[PbI4]). To efficiently acquire the data needed to construct a machine learning (ML) model of the reaction conditions where the 1D and 2D phases are formed, data acquisition was guided by a diverse-mini-batch-sampling active learning algorithm, using prediction confidence as a stopping criterion. Querying the ML model uncovered the reaction parameters that have the most significant effects on dimensionality control. Based on these insights, we propose a reaction scheme that rationalizes the formation of different dimensional MHP derivatives in the morph-Pb-I system. The data-driven approach presented here, including the use of additives to manipulate dimensionality, will be valuable for controlling the crystallization of a range of materials over large reaction-composition spaces.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43297968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-10-04DOI: 10.33774/chemrxiv-2021-16kq7
S. Mukherjee, S. Katea, Emille M Rodrigues, C. Segre, Eva Hemmer, P. Broqvist, H. Rensmo, G. Westin
The detailed structure of ZnO doped with 5 at.% (metal) of the large aliovalent Eu3+-ions was investigated using EXAFS to describe the local Eu and Zn coordination. The microstructure, crystalline phases, contents and ZnO unit-cell parameters for the ZnO:5%Eu sponges synthesised at 200 to 900 oC were obtained by XRD, SEM, and TEM analysis. XRD showed peaks solely of h-ZnO for the 600 oC sample, while heating at 700 oC and higher caused phase separation into h-ZnO:Eu and c-Eu2O3. XRD showed a close to zero increase in ZnO unit cell-volume of ca. 0.4 vol%, compared to un-doped ZnO for the non-phase separated, clean oxide made at 600 oC. The Zn EXAFS data showed an almost intact local ZnO structure. The Eu EXAFS showed an unusually low coordination number (CN) of ca. 5 for the 200-600 oC samples, while the CN increased for higher temperatures, in concert with the formation of c-Eu2O3. 23 DFT-generated theoretical ZnO structures containing Eu-clusters built from 1 to 4 Eu3+-Zn2+-vacancy- Eu3+ pairs were compared with the experimental data. The lowest formation energies and ZnO unit-cell volume increase versus un-doped ZnO (0.6-0.7 vol%), were obtained when combining two or four Eu3+-Zn2+-vacancy- Eu3+ pairs into Eu4 and Eu8 clusters showing an average Eu CN of ca. 5. These theoretically determined lowest energy structures were all in good agreement with the experimental results obtained by EXAFS and XRD. Photoluminescence excitation and emission spectra performed on the ZnO:5at%Eu sponges obtained at various temperatures, showed strong quenching of the characteristic Eu3+ transitions for samples obtained at 600 and 800 °C, most likely due to changes in the ZnO defect states, which are crucial for Eu3+ excitation, and due to self-quenching upon Eu clustering and c- Eu2O3 phase separation. Thus, the optical data further supported Eu clustering found by EXAFS, DFT and XRD techniques, corroborating structure-property relationships in these materials. Overall, as far as we can find, the findings reported herein point to a doping structure very different from those previously proposed in the literature. It demonstrates that the semiconductor ZnO can host molecular-sized clusters of metal-oxides, very dissimilar to ZnO.
{"title":"Molecular sized Eu-oxide clusters in defining optical properties in crystalline ZnO nanosponges","authors":"S. Mukherjee, S. Katea, Emille M Rodrigues, C. Segre, Eva Hemmer, P. Broqvist, H. Rensmo, G. Westin","doi":"10.33774/chemrxiv-2021-16kq7","DOIUrl":"https://doi.org/10.33774/chemrxiv-2021-16kq7","url":null,"abstract":"The detailed structure of ZnO doped with 5 at.% (metal) of the large aliovalent Eu3+-ions was investigated using EXAFS to describe the local Eu and Zn coordination. The microstructure, crystalline phases, contents and ZnO unit-cell parameters for the ZnO:5%Eu sponges synthesised at 200 to 900 oC were obtained by XRD, SEM, and TEM analysis. XRD showed peaks solely of h-ZnO for the 600 oC sample, while heating at 700 oC and higher caused phase separation into h-ZnO:Eu and c-Eu2O3. XRD showed a close to zero increase in ZnO unit cell-volume of ca. 0.4 vol%, compared to un-doped ZnO for the non-phase separated, clean oxide made at 600 oC. The Zn EXAFS data showed an almost intact local ZnO structure. The Eu EXAFS showed an unusually low coordination number (CN) of ca. 5 for the 200-600 oC samples, while the CN increased for higher temperatures, in concert with the formation of c-Eu2O3. 23 DFT-generated theoretical ZnO structures containing Eu-clusters built from 1 to 4 Eu3+-Zn2+-vacancy- Eu3+ pairs were compared with the experimental data. The lowest formation energies and ZnO unit-cell volume increase versus un-doped ZnO (0.6-0.7 vol%), were obtained when combining two or four Eu3+-Zn2+-vacancy- Eu3+ pairs into Eu4 and Eu8 clusters showing an average Eu CN of ca. 5. These theoretically determined lowest energy structures were all in good agreement with the experimental results obtained by EXAFS and XRD. Photoluminescence excitation and emission spectra performed on the ZnO:5at%Eu sponges obtained at various temperatures, showed strong quenching of the characteristic Eu3+ transitions for samples obtained at 600 and 800 °C, most likely due to changes in the ZnO defect states, which are crucial for Eu3+ excitation, and due to self-quenching upon Eu clustering and c- Eu2O3 phase separation. Thus, the optical data further supported Eu clustering found by EXAFS, DFT and XRD techniques, corroborating structure-property relationships in these materials. Overall, as far as we can find, the findings reported herein point to a doping structure very different from those previously proposed in the literature. It demonstrates that the semiconductor ZnO can host molecular-sized clusters of metal-oxides, very dissimilar to ZnO.","PeriodicalId":72565,"journal":{"name":"ChemRxiv : the preprint server for chemistry","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48027160","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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