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Nonparametric Subcluster Detection in Large Hyperspaces. 大超空间中的非参数子集群检测
Pub Date : 2023-01-01
James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Robert A Lodder

This assessment of subcluster detection in analytical chemistry offers a nonparametric approach to address the challenges of identifying specific substances (molecules or mixtures) in large hyperspaces. The paper introduces the concept of subcluster detection, which involves identifying specific substances within a larger cluster of similar samples. The BEST (Bootstrap Error-adjusted Single-sample Technique) metric is introduced as a more accurate and precise method for discriminating between similar samples compared to the MD (Mahalanobis distance) metric. The paper also discusses the challenges of subcluster detection in large hyperspaces, such as the curse of dimensionality and the need for nonparametric methods. The proposed nonparametric approach involves using a kernel density estimator to determine the probability density function of the data and then using a quantile-quantile algorithm to identify subclusters. The paper provides examples of how this approach can be used to analyze small changes in the near-infrared spectra of drug samples and identifies the benefits of this approach, such as improved accuracy and precision.

本文对分析化学中的亚簇检测进行了评估,为解决在大型超空间中识别特定物质(分子或混合物)的难题提供了一种非参数方法。论文介绍了亚簇检测的概念,即在一个更大的相似样本簇中识别特定物质。与 MD(Mahalanobis 距离)指标相比,BEST(Bootstrap Error-adjusted Single-sample Technique,引导误差调整单样本技术)指标是一种更准确、更精确的类似样本区分方法。论文还讨论了在大型超空间中进行子簇检测所面临的挑战,如维度诅咒和对非参数方法的需求。所提出的非参数方法包括使用核密度估算器来确定数据的概率密度函数,然后使用量化-量化算法来识别子集群。论文举例说明了这种方法如何用于分析药物样本近红外光谱的微小变化,并指出了这种方法的优点,如提高准确度和精确度。
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引用次数: 0
Variability in Content of Hydrocortisone Sodium Succinate. 氢化可的松琥珀酸钠含量的变异性。
Pub Date : 2023-01-01 DOI: 10.6084/m9.figshare.23573532
Margaret Felix, James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Robert A Lodder

SOLU-CORTEF Sterile Powder is a type of anti-inflammatory glucocorticoid that contains hydrocortisone sodium succinate as its active ingredient. It can be administered intravenously or intramuscularly, and comes in several packages including 100 mg plain vials without diluent. The diluent, which is part of the ACT-O-VIAL system, contains only Water for Injection and no preservatives. The pH of each formula is adjusted with sodium hydroxide to ensure it falls within the specified range of 7 to 8 after reconstitution. Intralot variability was detected in lot GA6092. Measuring in the PC subspace using just PCs 4, 5 and 6, vial 12 plots 4.2 BEST SDs from the center of the cluster, and vial 7 is 3.7 SDs from the center. Vial 18 appears 3.1 SDS from the center of the cluster (3/18, 17%). Interlot variability was also found in the spectral library (lots GA6092, GK7048, GM6839, GR8925, FL8062, FN6860, FR1914, and FR5098) containing the spectra of 126 hydrocortisone sodium succinate vials.

sol - cortefⓇ无菌粉末是一种抗炎糖皮质激素,含有氢化可的松琥珀酸钠作为其活性成分。它可以静脉注射或肌肉注射,有几个包装,包括100毫克普通小瓶,不含稀释剂。该稀释剂是ACT-O-VIAL系统的一部分,仅含注射用水,不含防腐剂。用氢氧化钠调节各配方的pH值,使其在重构后的pH值落在规定的7 - 8范围内。批次GA6092检测到批次内变异。在PC子空间中,仅使用pc4、5和6进行测量,第12瓶距集群中心的最佳SDs为4.2,第7瓶距中心的最佳SDs为3.7。样品18从聚类中心出现3.1 SDS(3/18, 17%)。在包含126支氢化可的松酸钠小瓶的光谱文库(编号GA6092、GK7048、GM6839、GR8925、FL8062、FN6860、FR1914和FR5098)中也发现了区间变异性。
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引用次数: 0
Spectral Intra-Lot and Inter-Lot Variability in Carfilzomib. 卡非佐米批次内和批次间的光谱变异性。
Pub Date : 2023-01-01 DOI: 10.6084/m9.figshare.21971213
James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Humza Anwar, Robert A Lodder

Carfilzomib is a prescription injectable drug approved for use by the FDA as an antineoplastic agent, part of a drug class of medications known as proteasome inhibitors, and used to stop and slow the growth and progression of cancer cells within the body. The drug is approved as an agent to treat multiple myeloma. It is provided as a single-use vial that contains 60 mg of carfilzomib as a sterile, white to off-white lyophilized cake or powder. Intra-lot and inter-lot variability in the spectra of carfilzomib vials was detected in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). One of 12 vials of lot 1143966 manufactured for Onyx Pharmaceuticals, Inc. appeared 4.7 multidimensional standard deviations (SDs) from the other 11 vials in a 3-D space formed by the first 3 principal components, which captured 81% of the total spectral variation. Spectra of 168 vials from 18 lots in the spectral library formed two groups in the 3-D space formed by the first 3 principal components. One group contained 155 vials and the other group contained 13 vials. The 2 groups had different locations and scales using a subcluster detection test at p=0.02.

卡非佐米是一种处方注射药物,被FDA批准用作抗肿瘤药物,属于蛋白酶体抑制剂一类药物,用于阻止和减缓体内癌细胞的生长和进展。该药被批准用于治疗多发性骨髓瘤。它以一次性小瓶的形式提供,含有60毫克卡非佐米,作为无菌的,白色到灰白色的冻干蛋糕或粉末。在药品质量研究(DQS)中,采用傅里叶变换近红外光谱法(FTNIR)检测卡非佐米小瓶的批内和批间光谱变化。为Onyx Pharmaceuticals, Inc.生产的批次1143966的12个小瓶中,有一个在由前3个主成分组成的三维空间中与其他11个小瓶出现4.7个多维标准差(SDs),占总光谱变化的81%。光谱库中18批168个小瓶的光谱在前3个主成分构成的三维空间中形成两组。一组155支,另一组13支。两组的位置和尺度不同,采用亚簇检测检验,p=0.02。
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引用次数: 0
Quality Variations in Thyrotropin Alfa. 促甲状腺激素α的质量变化。
Pub Date : 2023-01-01 Epub Date: 2023-06-20 DOI: 10.6084/m9.figshare.23524530
James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Cristian Samano-Garcia, Robert A Lodder

Thyrotropin alfa is a heterodimeric glycoprotein containing human thyroid stimulating hormone (TSH). It is used as an adjunctive diagnostic tool for serum thyroglobulin (Tg) testing with or without radioiodine imaging in the follow-up of patients with well-differentiated thyroid cancer who have previously undergone thyroidectomy. Inter-lot variability in the Fourier transform near-infrared spectra of 30 samples obtained from four separate lots of Thyrogen® was detected in the Drug Quality Study (DQS). The vials fell into two distinct groups (rtst = 0.90, rlim= 0.98, p=0.02). In addition, one vial of the 30 (3%) appeared 4.7 multidimensional SDs from all of the other vials, suggesting that it also represents a different material.

促甲状腺激素α是一种含有人类促甲状腺激素(TSH)的异二聚体糖蛋白。它被用作血清甲状腺球蛋白(Tg)检测的辅助诊断工具,在对既往接受过甲状腺切除术的分化良好的甲状腺癌患者进行随访时,可进行或不进行放射性碘成像检测。药物质量研究(DQS)发现,从四个不同批次的 Thyrogen® 中获得的 30 份样品的傅立叶变换近红外光谱存在批次间差异。这些样品分为两组(rtst=0.90,rlim=0.98,p=0.02)。此外,在这 30 个小瓶中,有一个小瓶(3%)与其他所有小瓶的多维标度相差 4.7 个标度,这表明它也代表了一种不同的材料。
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引用次数: 0
Spectrometric Analysis of Process Variations in Remifentanil. 瑞芬太尼工艺变化的光谱分析。
Pub Date : 2022-01-01 Epub Date: 2022-09-14 DOI: 10.6084/m9.figshare.21109093
James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Robert A Lodder

ULTIVA® (remifentanil hydrochloride) is a sterile, nonpyrogenic, preservative-free, white to off-white lyophilized powder for intravenous (IV) administration after reconstitution and dilution. Each vial contains 1, 2, or 5 mg of remifentanil base; 15 mg glycine; and hydrochloric acid to buffer the solutions to a nominal pH of 3 after reconstitution. ULTIVA® is a μ-opioid agonist with rapid onset and peak effect, and short duration of action. Intra-lot and inter-lot variability in the spectra of ULTIVA® was measured in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). In 6 vials sampled, 1 came from lot 220453F while 5 came from lot 30020BF. The 1 vial sampled from lot 220453F appeared 122 multidimensional SDs from the other vials from lot 30020BF, suggesting that it represents a different formulation or material. Consequently, additional spectra from other lots were analyzed. Spectra of 90 vials from 9 lots in the spectral library contained vials that were outside the main group (50.3 SDs using a subcluster detection test), suggesting that the 35 library vials (39% of the total) contain different materials from the other 55 vials.

ULTIVA®(盐酸瑞芬太尼)是一种无菌,无热原,不含防腐剂,白色至灰白色冻干粉,用于静脉(IV)给药后重组和稀释。每瓶含有1、2或5毫克瑞芬太尼碱;甘氨酸15毫克;和盐酸缓冲溶液至标称pH值3后重组。ULTIVA®是一种μ-阿片类激动剂,起效快,见效快,作用时间短。在药物质量研究(DQS)中,使用傅里叶变换近红外光谱(FTNIR)测量ULTIVA®的批次内和批次间光谱变化。取样的6个小瓶中,1个来自批号220453F, 5个来自批号30020BF。从批号220453F取样的1瓶样品中出现了122个多维SDs,而从批号30020BF取样的其他小瓶中出现了122个多维SDs,这表明它代表了不同的配方或材料。因此,分析了其他批次的附加光谱。光谱文库中9批90瓶样品的光谱中含有主组外的样品(50.3个SDs,采用亚聚类检测测试),表明35瓶样品(占总数的39%)与其他55瓶样品含有不同的物质。
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引用次数: 0
FTNIR Spectrometry of Micafungin Sodium Quality. 米卡芬钠品质的FTNIR光谱分析。
Pub Date : 2022-01-01 DOI: 10.6084/m9.figshare.19071704
James T. Isaacs, Philip J. Almeter, Bradley S. Henderson, Aaron N. Hunter, Thomas L. Platt, R. Lodder
Intra-lot and inter-lot variability in the spectra of micafungin was detected in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). Two vials of 6 vials sampled from Fresenius Kabi lot ACP106 appeared 7.9 and 14.0 standard deviations (SDs) from the center of the rest of the vials on the DQS FTNIR screening assay. Spectra of 48 vials from 7 lots in the library showed 2 outliers at 8.3 and 9.8 SDs from the center of the rest of the library, suggesting they represent different material.
在药品质量研究(DQS)中,采用傅里叶变换近红外光谱法(FTNIR)检测米卡芬宁的批内和批间光谱变异性。在DQS FTNIR筛选试验中,从费森尤斯卡比批次ACP106中取样的6个小瓶中,有2个小瓶与其他小瓶的中心偏差分别为7.9和14.0标准差。文库中7个批次的48个小瓶的光谱显示,距离文库其余部分中心的8.3和9.8个SDs处有2个异常值,表明它们代表不同的物质。
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引用次数: 1
Lack of Content Uniformity in MMR Vaccine. MMR疫苗含量缺乏一致性。
Pub Date : 2022-01-01 DOI: 10.6084/m9.figshare.19217478
James T. Isaacs, Philip J. Almeter, Bradley S. Henderson, Aaron N. Hunter, Thomas L. Platt, R. Lodder
The measles, mumps, and rubella (MMR) vaccine is a vaccine used to prevent measles, mumps, and rubella (German measles). The vaccine is mandated for children to attend public school in nearly all US states. However, measles cases have been increasing in the past decade, and quality problems have recently been noted by the US Food and Drug Administration (FDA) with the vaccine manufacturer. Intra-lot and inter-lot variability in the spectra of MMR (measles, mumps, and rubella) vaccine was detected in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). Six vials of 12 (50%) sampled from Merck lot U006488 appeared 14.5 SDs from the other vials on a subcluster detection test, suggesting that they represent different material. Spectra of 198 vials from 12 lots in the spectral library contained 140 vials in one tight ellipsoidal group, and 58 vials (30%) were outside that group (39.7 SDs using a subcluster detection test), suggesting that the library vials also contain differing materials.
麻疹、腮腺炎和风疹(MMR)疫苗是一种用于预防麻疹、腮腺炎和风疹(德国麻疹)的疫苗。在美国几乎所有州的公立学校,儿童都必须接种这种疫苗。然而,麻疹病例在过去十年中一直在增加,美国食品和药物管理局(FDA)最近与疫苗制造商注意到质量问题。在药物质量研究(DQS)中,使用傅里叶变换近红外光谱法(FTNIR)检测了MMR(麻疹、腮腺炎和风疹)疫苗光谱的批次内和批次间变异。默克U006488批次12个样品中的6个样品(50%)在亚簇检测测试中出现了与其他样品相同的14.5 SDs,表明它们代表不同的材料。光谱文库中12批198个样品的光谱中,有140个样品在一个紧密椭球组内,有58个样品(30%)在椭球组外(亚聚类检测结果为39.7 SDs),表明文库样品中也含有不同的物质。
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引用次数: 2
Spectrometric Results of Process Variations in Dacarbazine. 达卡巴嗪工艺变化的光谱分析结果。
Pub Date : 2022-01-01 Epub Date: 2022-01-04 DOI: 10.6084/m9.figshare.17868614
James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Robert A Lodder

Intra-lot and inter-lot variability in dacarbazine was detected in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). One vial of six vials sampled from Fresenius Kabi Lot 6125612 appeared 7.8 SDs from the center of the rest of the vials on the DQS FTNIR screening assay. Spectra of 54 vials from six lots in the library clustered in two groups (p=0.02), suggesting they represent different material.

在药品质量研究(DQS)中,采用傅里叶变换近红外光谱法(FTNIR)检测达卡巴嗪的批次内和批次间变异。在DQS FTNIR筛选试验中,从费森尤斯卡比批次6125612取样的6个小瓶中,有1个小瓶从其余小瓶的中心出现7.8个SDs。文库中6批54个小瓶的光谱聚为两组(p=0.02),表明它们代表不同的物质。
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引用次数: 1
Levothyroxine Variations by Process Analytical Technology. 过程分析技术研究左旋甲状腺素的变化。
Pub Date : 2022-01-01 DOI: 10.6084/m9.figshare.18316523
James T. Isaacs, Philip J. Almeter, Bradley S. Henderson, Aaron N. Hunter, Thomas L. Platt, R. Lodder
Intra-lot and inter-lot variability in the spectra of levothyroxine was detected in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). Two vials of 12 vials sampled from Athenex lot AFN102 appeared 10.1 and 9.1 SDs from the center of the rest of the vials on the DQS FTNIR screening assay. Spectra of 108 vials from six lots in the library clustered in two groups (p=0.02), suggesting they represent different material.
在药品质量研究(DQS)中,采用傅里叶变换近红外光谱法(FTNIR)检测左甲状腺素的批内和批间光谱变化。在DQS FTNIR筛选试验中,从Athenex批次AFN102取样的12个小瓶中,有两个小瓶从其余小瓶的中心出现10.1和9.1个SDs。文库中6批108个样品的光谱聚为两组(p=0.02),表明它们代表不同的物质。
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引用次数: 1
Potential Process Control Issues with Pemetrexed. 培美曲塞潜在的工艺控制问题。
Pub Date : 2022-01-01 Epub Date: 2022-07-06 DOI: 10.6084/m9.figshare.20245158
James T Isaacs, Philip J Almeter, Bradley S Henderson, Aaron N Hunter, Thomas L Platt, Robert A Lodder

Pemetrexed is a folate analog metabolic inhibitor used in treatment of locally advanced or metastatic nonsquamous non-small cell lung cancer and for mesothelioma. Intra-lot and inter-lot variability in the spectra of ALIMTA® was detected in the Drug Quality Study (DQS) using Fourier transform near-infrared spectrometry (FTNIR). One vial of 12 (8%) sampled from lot S20I013A appeared 3.0 multidimensional SDs from the other vials, suggesting that it represents a different material. Consequently, additional spectra from other lots were analyzed. Spectra of 147 vials from 23 lots in the spectral library contained 14 vials that were outside the main group (26.4 SDs using a subcluster detection test), suggesting that the 14 library vials (9.5% of the total) also contain differing materials.

培美曲塞是一种叶酸类似物代谢抑制剂,用于治疗局部晚期或转移性非鳞状非小细胞肺癌和间皮瘤。在药物质量研究(DQS)中,使用傅里叶变换近红外光谱法(FTNIR)检测ALIMTA®的批次内和批次间光谱变化。从批次S20I013A中取样的12个样品中的一个(8%)与其他小瓶相比出现了3.0个多维SDs,表明它代表不同的材料。因此,分析了其他批次的附加光谱。光谱文库中23批147个样品的光谱中有14个样品在主组外(亚簇检测测试为26.4个SDs),表明14个样品(占总数的9.5%)也含有不同的物质。
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引用次数: 1
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