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Bioinformatics Techniques for Developing Molecular Detection Methods for the HIV-1 Gag Gene 开发 HIV-1 Gag 基因分子检测方法的生物信息学技术
Pub Date : 2024-07-24 DOI: 10.24018/ejbiomed.2024.3.4.97
Asryadin Asryadin, Nilasari Indah Yuniati, Nur Aini Hidayah Khasanah, Adhi Aqwam, Rizka Khairunnisa, Hetti Koes Endang, Jumratul Nurhidayah, Daniel Djoko Wahyono, Alice Yuniaty
The HIV-1 Gag gene, which plays an essential role in HIV replication, can be detected accurately using qRT-PCR. The quality of qRTPCR analysis is determined by the primers and probes used for DNA amplification. This research aims to use bioinformatics techniques to design primer pair sequences and qRT-PCR probes for HIV detection using the HIV-1 Gag gene. HIV-1 Gag gene sequences were obtained from HIV-1 isolates and serotypes, downloaded from the National Center for Biotechnology Information (NCBI) GenPeptd nucleotide database. Sequences were then examined using the ClustalW algorithm of the Bioedit sequence alignment editor version 7.2.5.0. through gene alignment using multiple sequence alignment (MSA) with conserved regions. The primer pair sequences of the Gag-HIV 1 gene were obtained, namely, forward 5'-CAGTACAATGTGCTTCCACAGGG-3 and reverse 3'-CGGGATAGAGATTCAGTCTAGG-5' with the probe sequence 5'-GGATCACCAGCAATATTTCAGGGAACG-3'. The primer sequence has a length of 23 bases (forward), 22 bases (reverse), GC content of 52% (reverse), 50% (forward), and the same forward and reverse melting temperature (Tm) of 66°C. The probe sequence is 27 bases long, with a GC content of 48% and a Tm of 67.3°C. No hairpin loops and dimers were formed in the primer pair or probe, and the gag gene had 100% homology with HIV-1. It was concluded that the primer and probe pair sequences met the requirements and could be used to amplify the HIV-1 Gag gene using qRT-PCR.
使用 qRT-PCR 可以准确检测 HIV-1 Gag 基因,该基因在 HIV 复制过程中起着至关重要的作用。用于 DNA 扩增的引物和探针决定了 qRT-PCR 分析的质量。本研究旨在利用生物信息学技术设计引物对序列和 qRT-PCR 探针,以便利用 HIV-1 Gag 基因检测艾滋病毒。从美国国家生物技术信息中心(NCBI)的 GenPeptd 核苷酸数据库中下载了 HIV-1 分离株和血清型的 HIV-1 Gag 基因序列。然后使用 Bioedit 序列比对编辑器 7.2.5.0 版的 ClustalW 算法对序列进行检验。获得了 Gag-HIV 1 基因的引物对序列,即正向 5'-CAGTACAATGTGCTTCCACAGGG-3 和反向 3'-CGGGATAGAGATTCAGTCTAGG-5',探针序列为 5'-GGATCACCAGCAATTTCAGGGAACG-3'。引物序列长度为 23 个碱基(正向)和 22 个碱基(反向),GC 含量分别为 52%(反向)和 50%(正向),正向和反向熔点温度(Tm)均为 66°C。探针序列长 27 个碱基,GC 含量为 48%,Tm 为 67.3°C。引物对和探针中没有形成发夹环和二聚体,gag 基因与 HIV-1 有 100% 的同源性。结论是引物对和探针对序列符合要求,可用于使用 qRT-PCR 扩增 HIV-1 Gag 基因。
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引用次数: 0
Cytomorphological Analysis of Liquid PRF Produced with DUO Fixed Angle Centrifuge (Process, France) 使用 DUO 固定角度离心机(法国工艺)生产的液体 PRF 的细胞形态学分析
Pub Date : 2024-01-11 DOI: 10.24018/ejbiomed.2024.3.1.82
M. Crisci, Giovanni Lepore, Federica Feleppa, A. Crisci, Fabiana Flagiello
Background: Liquid PRF is a second-generation injectable platelet concentrate rich in platelets, leukocytes, and fibrinogen obtained by centrifugation of autologous blood.Methods: This study aims to analyze the cellular and Fibrinogen content of various types of Liquid PRF (C-PRF liquid, A-PRF liquid, i-PRF, Liquid Fibrinogen) obtained with the use of DUO Fixed Angle Centrifuge (PRF DUO, Process for PRF, Nice, France) with Vacumed FL tubes (code 44909) and/or original S-PRF Sticky tube. An average accumulation of thrombocytes of almost 1.5 times compared to whole blood was found. Due to the high concentration of platelets, PRF-Liquids contain important growth factors for tissue regeneration.Results: In this preliminary study, we have shown that the type of Liquid PRF with a higher content of Platelets (126.3% vs. 109.5%), Monocytes (127.6% vs. 84.6%), with a sufficient content of Lymphocytes (192.9% vs. 242.1%) and Neutrophilic Granulocytes (64.6% vs. 64.8%) and Fibrinogen (67.9% vs. 87.3%), is the i-PRF (700 rpm x 5') obtained with Vacumed FL tube (code 44909) with statistically insignificant differences compared to whole blood, while the content of Lymphocytes and Fibrinogen present in i-PRF (700 rpm x 5') obtained with PRF-S-Sticky tube is higher. In comparison, the content of cells and Fibrinogen obtained with the two methods of preparing PRP is much lower.Conclusions: This indicates that the liquid PRF is more suitable to be used in various cases of tissue regeneration such as facial aesthetics, intra-articular injection, peri-ulcerative injection, etc., is the i-PRF (700 rpm x 5') obtained with a Vacumed FL tube.
背景:液体 PRF 是一种富含血小板和纤维蛋白原的第二代可注射血小板浓缩物:液体血小板浓缩物(Liquid PRF)是第二代可注射的血小板浓缩物,富含血小板、白细胞和纤维蛋白原,由自体血液离心获得:本研究旨在分析各种类型的液体 PRF(C-PRF 液体、A-PRF 液体、i-PRF、液体纤维蛋白原)的细胞和纤维蛋白原含量,这些液体 PRF 是使用 DUO 固定角度离心机(PRF DUO,PRF 流程,法国尼斯)和 Vacumed FL 管(代码 44909)和/或原始 S-PRF 粘稠管获得的。与全血相比,血小板的平均累积量几乎是全血的 1.5 倍。由于血小板的高浓度,PRF-液体含有促进组织再生的重要生长因子:在这项初步研究中,我们发现 PRF 液体中血小板(126.3% 对 109.5%)、单核细胞(127.6% 对 84.6%)含量较高,淋巴细胞(192.9% 对 242.1%)、中性粒细胞(64.6% 对 64.8%)和纤维蛋白原(67.9% 对 87.3%)含量充足。与全血相比,使用 Vacumed FL 管(代码 44909)获得的 i-PRF (700 rpm x 5')中的淋巴细胞和纤维蛋白原含量较高,而使用 PRF-S-Sticky 管获得的 i-PRF (700 rpm x 5')中的淋巴细胞和纤维蛋白原含量较低。相比之下,用两种方法制备 PRP 所获得的细胞和纤维蛋白原的含量要低得多:这表明液态 PRF 更适合用于各种组织再生,如面部美容、关节内注射、溃疡周围注射等。
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引用次数: 0
Amplification of Sars-Cov2 Viral Markers in Côte d’Ivoire 科特迪瓦 Sars-Cov2 病毒标记的扩增
Pub Date : 2023-12-03 DOI: 10.24018/ejbiomed.2023.2.4.80
A. Sylla, S. Kakou-ngazoa, B. K. Bla, Tata G. S. Coulibaly, Zeinab Ouattara, Y. K. Ouattara, A. Addablah, Mireille S. Kouamé-Sina, Venance Kouakou, D. N. Coulibaly, Mireille Dosso
The COVID-19 pandemic is causing millions of deaths worldwide. In West Africa, particularly in Côte d’Ivoire, many cases of illness and death have also been reported. The country has applied the diagnostic method recommended by the World Health Organization based on the detection of the genetic material of the SARS-CoV2 virus using RT-qPCR, which requires native or recombinant positive controls to validate the diagnostics. Recombinant plasmids are used for in vitro amplification in E. coli strains. This study aims to propose a bank of recombinant viral genomes for the diagnosis of SARS-CoV-2.A total of fifty (50) positive nasopharyngeal samples have been collected during the pandemic from 2020 to 2022. ARN viral extraction was applied, and the viral targets of Envelope, Membrane, Nucleoprotein, and Glycoprotein Spike were amplified using RT-qPCR methods. The PCR products were cloned to obtain recombinant plasmids.Our results show positive amplification of the three genes E, M, and N detected with positive rates of 50%, 40%, and 36%. A partial 995 bp fragment of the S gene was amplified at a low rate. Recombinant plasmids of SARS-CoV-2 were obtained, 50, 40, and 13 for the E gene, M gene, and N gene respectively. The recombinant plasmids were detected positive by conventional PCR and real-time PCR of SARSCoV-2. The nucleotide sequence of recombinant plasmids shows sequences homologies of 95% to 100% with the Wuhan reference strain for all three genes. This study has provided reliable recombinant plasmids for the diagnosis of SARS-CoV-2 in Côte d’Ivoire and offers the way for future studies to diagnostics tools.
COVID-19 大流行正在全球造成数百万人死亡。在西非,特别是在科特迪瓦,也有许多病例和死亡报告。该国采用了世界卫生组织推荐的诊断方法,即利用 RT-qPCR 检测 SARS-CoV2 病毒的遗传物质,该方法需要本地或重组阳性对照来验证诊断结果。重组质粒用于大肠杆菌菌株的体外扩增。本研究旨在提出一个用于诊断 SARS-CoV-2 的重组病毒基因组库。在 2020 年至 2022 年大流行期间,共收集了 50 份阳性鼻咽样本。采用 ARN 病毒提取法,并使用 RT-qPCR 方法扩增包膜、膜、核蛋白和糖蛋白穗的病毒靶标。结果显示,E、M 和 N 三个基因的扩增阳性率分别为 50%、40% 和 36%。S 基因部分 995 bp 片段的扩增率较低。获得的 SARS-CoV-2 重组质粒中,E 基因、M 基因和 N 基因分别为 50、40 和 13 个。通过 SARSCoV-2 的常规 PCR 和实时 PCR 检测,重组质粒均呈阳性。重组质粒的核苷酸序列与武汉参考菌株的三个基因序列的同源性为 95% 至 100%。这项研究为科特迪瓦 SARS-CoV-2 的诊断提供了可靠的重组质粒,并为今后的研究提供了诊断工具。
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引用次数: 0
Letrozole and HFD_HG on Insulin and GDP 来曲唑和 HFD_HG 对胰岛素和 GDP 的影响
Pub Date : 2023-11-25 DOI: 10.24018/ejbiomed.2023.2.4.77
Fitria Nurul Hidayah, Alfaina Wahyuni, Ana Majdawati
The pathogenesis of Polycystic ovary syndrome (PCOS) involves several mechanisms, that include the disorders of carbohydrate and lipid metabolism, oxidative stress, and insulin resistance. That condition makes PCOS have a great impact on long-term health problems such as cardiovascular disease, atherosclerosis, and diabetes. What is the potential for increased diabetic in a PCOS model mouse? This study aims to determine the potential for diabetes cases in PCOS patients through observations in PCOS model mice. Research method: using Postest Only Control Group Design method. Samples included 24 female, 3 months aged rats Rattus norvegicus strain Wistar and weighing around 100–130 grams. After observing the estrous cycle, 16 rats were randomly selected to make a model PCOS with letrozol induction 1 mg/kg BW/day orally in combination with a high-fat high-fructose diet. The treatments were given for 18, 21, 24 and 27 days. Furthermore, after fasting for 12 hours, fasting sugar levels and insulin levels were measured using the ELISA method. The results were analyzed by One Way Anova test with a significance level of α = 0.05. Data analysis was conducted with the SPSS program version 24.0 for Windows. Results: There was no significant difference in fasting insulin levels between the control group and the PCOS group (p > 0.05), but fasting blood sugar levels increased significantly (p < 0.05). Conclusion: There was an increase in the diabetic potency of PCOS mice-induced by the combination of testosterone propionate and a high-fat, high-fructose diet even when insulin levels are not significantly increased.
多囊卵巢综合征(PCOS)的发病机制涉及多种机制,包括碳水化合物和脂质代谢紊乱、氧化应激和胰岛素抵抗。这种情况使得多囊卵巢综合症对心血管疾病、动脉粥样硬化和糖尿病等长期健康问题有很大影响。多囊卵巢综合症模型小鼠糖尿病增加的可能性有多大?本研究旨在通过对多囊卵巢综合症模型小鼠的观察,确定多囊卵巢综合症患者患糖尿病的可能性。研究方法:采用后测对照组设计方法。样本包括 24 只 3 个月大的雌性大鼠 Rattus norvegicus 品系 Wistar,体重约 100-130 克。在观察发情周期后,随机选取 16 只大鼠制作多囊卵巢综合征模型,用来曲唑诱导 1 毫克/千克体重/天口服,并结合高脂肪高果糖饮食。治疗时间分别为 18、21、24 和 27 天。此外,在禁食 12 小时后,使用 ELISA 方法测量空腹血糖水平和胰岛素水平。结果采用单向 Anova 检验进行分析,显著性水平为 α = 0.05。数据分析使用 SPSS 程序 24.0 Windows 版进行。结果对照组与多囊卵巢综合征组的空腹胰岛素水平无明显差异(P > 0.05),但空腹血糖水平明显升高(P < 0.05)。结论即使胰岛素水平没有显著增加,丙酸睾酮和高脂肪、高果糖饮食联合诱导的多囊卵巢综合症小鼠的糖尿病患病率也会增加。
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引用次数: 0
Vaccination Rate for COVID-19 in a Primary Healthcare Center in Greece 希腊一家初级保健中心的 COVID-19 疫苗接种率
Pub Date : 2023-11-15 DOI: 10.24018/ejbiomed.2023.2.4.79
M. Stamouli, Christina Seitopoulou, Georgia Kalliora, Nikoletta Renesi, A. Mourtzikou
The novel coronavirus SARS-CoV-2 has been the contributing factor to the COVID-19 disease pandemic, since early 2020. It first appeared in December 2019 and since then rapidly spread worldwide. The severe symptoms of COVID-19 disease, especially in the population groups with higher risk of infection or disease complications, along with the increased mortality rates determined the need for adequate protection and prevention measures to be taken. From the beginning of the pandemic, efforts have been made to develop and produce vaccines that could stop the spread of the disease. The vaccination in most countries was performed in phases, with priority to population groups with a higher risk of infection or disease complications, such as the elderly and patients with chronic diseases, and to population groups with a high risk of professional exposure. This study presented data from the vaccination program, implemented at a primary healthcare center in Greece, that served as a vaccination center during the pandemic. Relying on the results, both the attendance rate and the vaccination rate were very high, which proves that the necessity of the vaccine is well established and that vaccination hesitancy is mitigated among the population served at the Nikea Health Center.
自 2020 年初以来,新型冠状病毒 SARS-CoV-2 已成为 COVID-19 疾病大流行的促成因素。它于 2019 年 12 月首次出现,此后迅速在全球蔓延。COVID-19 疾病的严重症状,特别是在感染或疾病并发症风险较高的人群中,以及死亡率的增加,决定了必须采取充分的保护和预防措施。从大流行开始,人们就一直在努力开发和生产能够阻止疾病传播的疫苗。大多数国家的疫苗接种是分阶段进行的,优先接种对象是感染风险或疾病并发症较高的人群,如老年人和慢性病患者,以及职业暴露风险较高的人群。本研究提供了希腊一家初级医疗保健中心在大流行期间作为疫苗接种中心实施的疫苗接种计划的数据。从结果来看,就诊率和疫苗接种率都非常高,这证明疫苗的必要性已得到充分肯定,而且尼卡保健中心服务的人群中疫苗接种犹豫不决的情况也有所缓解。
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引用次数: 0
The Administration of 2% Plum (Prunus domestica L.) Extract Cream Inhibited the Increase of Tyrosinase Enzyme Expression and the Amount of Skin Melanin in Male Guinea Pigs (Cavia porcellus) Skin Exposed to UV B Light 2%李(Prunus domestica L.)的施用提取物乳膏抑制UV - B光照射下雄性豚鼠(Cavia porcellus)皮肤酪氨酸酶表达和皮肤黑色素量的增加
Pub Date : 2023-07-13 DOI: 10.24018/ejbiomed.2023.2.3.52
Mila Damayanti Wahyuningsih, W. Pangkahila, N. Winarti
Medical science has progressed a lot and Anti Aging Medicine (AAM) is one of the sciences in the medical world that brings a new paradigm. Hyperpigmentation is one of the most common skin problems caused by excessive pigment melanin production. Plums are nutrient-rich and can be eaten raw, dried, or processed. This research aimed to evaluate the administration of 2% plum extract in inhibiting the increase of tyrosinase enzyme expression and the amount of skin melanin in male guinea pigs’ skin exposed to UV B light. This was a randomized post-test-only control group design using 30 male guinea pigs (Cavia porcellus), aged 12-16 weeks, weight 300-350 grams, and divided into three groups, the control group did not get any cream, treatment group 1 received cream base, and treatment group 2 got 2% plum extract cream. Creams were applied daily 0.1 mg/cm2 at 09.40 and 14.00 WITA. All guinea pigs received UV-B irradiation, three times a week with a total dose of 390 mJ/cm2. Tyrosinase enzyme expression was examined by calculating the percentage of cells expressing the enzyme using immunohistochemical methods. On the other hand, the amount of melanin was obtained by calculating the melanin percentage that appeared on histopathological preparations using Masson-Fontana staining. The data obtained were analyzed using the One-way ANOVA test with a significance value of p<0.05. The expression of the tyrosinase enzyme in the control group and group with base cream was not significantly different (22.75 ± 5.50% vs. 21.30 ± 6.50%, p = 0.601). Similarly, the mean amount of melanin (4.42 ± 1.57% vs 4.27 ± 1.63%, p = 0.775). On the other hand, the results of the mean tyrosinase expression and the mean amount of melanin in the group receiving 2% plum extract were significantly lower than the treatment group receiving base cream (7.06 ± 5.18% vs 21.30 ± 6.50% and 0.42 ± 0.19% vs. 4.27 ± 1.63%) with p-value < 0.000. It can be concluded that the administration of 2% plum (Prunus domestica L.) extract cream inhibited the increase in the expression of the tyrosinase enzyme and the amount of melanin in the skin of male guinea pigs (C. porcellus) exposed to UVB light.
随着医学的进步,抗衰老医学(AAM)是医学界带来新范式的科学之一。色素沉着症是由黑色素分泌过多引起的最常见的皮肤问题之一。李子营养丰富,可以生吃、干吃或加工吃。本研究旨在探讨2%梅子提取物对UV B光照射下雄性豚鼠皮肤酪氨酸酶表达和皮肤黑色素量增加的抑制作用。选用12-16周龄、体重300-350 g的雄豚鼠(Cavia porcellus) 30只,随机分为3组,对照组不给予乳膏,治疗组1给予乳膏底料,治疗组2给予2%梅子提取物乳膏。乳霜每天0.1 mg/cm2在上午9点40分和下午14点使用。所有豚鼠均接受UV-B照射,每周三次,总剂量为390 mJ/cm2。通过免疫组织化学方法计算表达酪氨酸酶的细胞百分比来检测酪氨酸酶的表达。另一方面,通过使用Masson-Fontana染色法计算组织病理学制剂上出现的黑色素百分比来获得黑色素的数量。所得资料采用单因素方差分析(One-way ANOVA)检验,p<0.05为显著性值。对照组与基础霜组酪氨酸酶表达量差异无统计学意义(22.75±5.50%∶21.30±6.50%,p = 0.601)。同样,黑色素平均含量(4.42±1.57% vs 4.27±1.63%,p = 0.775)。另一方面,2%梅子提取物组的平均酪氨酸酶表达量和平均黑色素量显著低于基础霜组(7.06±5.18% vs 21.30±6.50%,0.42±0.19% vs 4.27±1.63%),p值< 0.000。由此可见,2%李梅提取物乳膏抑制了UVB光照射雄性豚鼠皮肤中酪氨酸酶表达和黑色素含量的增加。
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引用次数: 0
Burdock Root (Arctium lappa) Reduces Steatosis and Serum Malondialdehyde in Wistar Rats Fed with Used Cooking Oil 牛蒡根(牛蒡)降低食油喂养Wistar大鼠的脂肪变性和血清丙二醛
Pub Date : 2023-07-02 DOI: 10.24018/ejbiomed.2023.2.3.67
J. Jessica, I. M. W. Ruma, I. G. A. Widianti
Utilization of used cooking oil may cause fat accumulation in the body leading to exceeding metabolic capacity of the liver and lipid peroxidation, subsequently triggering oxidative stress that will lead to non-alcoholic fatty liver disease (NAFLD). Burdock root (Arctium lappa) have hypolipidemic, antioxidant, and anti-inflammatory properties. This study aims to determine the effects of Burdock root to reduce steatosis and malondialdehyde (MDA) plasma levels in male Wistar rats fed with used cooking oil.This study used a post-test only control group design. Thirty healthy male Wistar rats were randomized into three groups. All groups were given 0,42 mL of used cooking oil. Fifteen minutes after, the intervention group 0 (P0) was given 1 mL of distilled water 1x/day. The intervention group 1 (P1) was given 100 mg/kg BW of burdock roots ethanolic extract diluted in 1 mL of distilled water 1x/day. The intervention group 2 (P2) was given 200 mg/kg BW of burdock roots ethanolic extract diluted in 1 ml of distilled water 1x/day. After 28 days, histopathological examination of the liver tissue to measure steatosis and peripheral blood taken to measure serum MDA levels and compared between groups.The results showed that the average steatosis in the P0 group was significantly higher than the P1 group (15.51±3.22% vs. 8.92±1.49%, respectively; p = 0.00). Similar results between the P1 group were also significantly higher compared to the P2 group (5.18±1.31%; p = 0.002). The mean serum MDA level revealed a significantly higher results among the P0 group compared to P1 group as well as P1 group compared to P2 group (12.58±1.92 nmol/mL vs. 9.76±0.47 nmol/mL, respectively; p=0.011 and (9.76±0.47 nmol/mL vs. 8.69±0.33 nmol/mL, respectively; p=0.011).The conclusions of this study were that burdock roots could reduce steatosis and serum MDA in male Wistar rats that were given used cooking oil.
使用用过的食用油可能会导致脂肪在体内积累,导致肝脏代谢能力过剩和脂质过氧化,随后引发氧化应激,导致非酒精性脂肪性肝病(NAFLD)。牛蒡根(牛蒡)具有降血脂、抗氧化和抗炎的特性。本研究旨在探讨牛蒡根对食用废食用油的雄性Wistar大鼠脂肪变性和血浆丙二醛(MDA)水平的影响。本研究采用仅测试后对照组设计。健康雄性Wistar大鼠30只,随机分为3组。各组分别给予使用过的食用油0.42 mL。15分钟后,干预组0 (P0)给予蒸馏水1 mL,每天1次。干预组1 (P1)给予牛蒡根乙醇提取物100 mg/kg BW,用1ml蒸馏水稀释,1次/天。干预组2 (P2)给予牛蒡根乙醇提取物200 mg/kg BW,用蒸馏水1 ml稀释,1次/d。28 d后,行肝组织病理学检查测定脂肪变性,取外周血测定血清丙二醛水平,并进行组间比较。结果显示,P0组平均脂肪变性明显高于P1组(15.51±3.22% vs. 8.92±1.49%);P = 0.00)。与P2组相比,P1组之间的相似结果也显著高于P2组(5.18±1.31%;P = 0.002)。血清MDA均值P0组高于P1组(12.58±1.92 nmol/mL), P1组高于P2组(9.76±0.47 nmol/mL);p=0.011和(9.76±0.47)nmol/mL vs(8.69±0.33)nmol/mL;p = 0.011)。本研究结果表明,牛蒡根能降低食油后雄性Wistar大鼠脂肪变性和血清丙二醛。
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引用次数: 0
Seasonal Respiratory Virus Circulation in a Tertiary Care Hospital in Greece 希腊一家三级医院的季节性呼吸道病毒传播
Pub Date : 2023-07-02 DOI: 10.24018/ejbiomed.2023.2.3.65
A. Mourtzikou, M. Stamouli, Elpida Toka, Panagiotis Koumpouros, Georgia Kalliora, Christina Seitopoulou, Maria Kimouli
Background: The COVID-19 pandemic caused by the novel SARS-CoV-2 virus affected health care systems and public health worldwide dramatically. Several measures were applied in order to prevent or stop the rapid transmission of the virus and the subsequent disease, such as lockdowns, physical distancing, strictly hygiene, along with travel restrictions. Global population after vaccination programs against COVID-19 were carried out, is facing a “tripledemic” situation threat, with the co-existance of SARS-CoV-2, influenza and RSV. The aim of the present study was to evaluate the co-existence of SARS-CoV-2, influenza and RSV, as well as the correlation with gender, age, Cts and vaccination doses.Methods: A total of 302 patients were included in the study. All patients were admitted to the emergency department of General Hospital Nikea, Piraeus with common upper respiratory tract symptoms and were suspected for COVID-19 disease, between March to July 2022. Patients’ age, gender, vaccination doses, and results from RT-PCR detection for SARS-CoV-2, RSV and Influenza viruses were recorded.Results: 139 were male and 163 female, aged between 18-94 years. Out of the patients included in the study, 206 were vaccinated and 96 were not vaccinated. Among vaccinated patients 97 were male and 109 were female. A percentage of 3.3% had received one vaccination dose, 16.9% two and 47.7% three. Moreover, 88 patients presented infection symptoms; 81 patients had a positive rapid test result. We detected 15 cases of co-infection of SaRS-CoV-2 and RSV and only one case, of co-infection of SaRS-CoV-2 with influenza virus.Conclusions: The majority of patients admitted to the emergency department of GHNP with common upper respiratory tract clinical manifestations were female. A significantly lower rate of co-infection with SARS-CoV-2 and RSV was detected in patients having received 2 vaccination doses, compared to patients having received 3 out of 3 vaccination doses or up to 1 vaccination dose. Ct values for SARS-CoV-2 and RSV pathogens were between 10-17. Co-infection with SARS-CoV-2 and Influenza was detected in only 1 patient.
背景:由新型SARS-CoV-2病毒引起的COVID-19大流行严重影响了全球卫生保健系统和公共卫生。为防止或阻止病毒及其后续疾病的快速传播,采取了若干措施,如封锁、保持身体距离、严格保持卫生以及限制旅行。全球人口在开展COVID-19疫苗接种计划后,正面临SARS-CoV-2、流感和RSV共存的“三疫”形势威胁。本研究的目的是评估SARS-CoV-2、流感和RSV的共存情况,以及与性别、年龄、ct和疫苗接种剂量的相关性。方法:共纳入302例患者。所有患者均于2022年3月至7月期间在比雷埃夫斯尼科雅总医院急诊科就诊,均有常见上呼吸道症状并疑似为COVID-19疾病。记录患者的年龄、性别、疫苗接种剂量以及SARS-CoV-2、RSV和流感病毒的RT-PCR检测结果。结果:男性139例,女性163例,年龄18 ~ 94岁。在纳入研究的患者中,206人接种了疫苗,96人未接种疫苗。接种疫苗的患者中,男性97例,女性109例。接种一剂疫苗的比例为3.3%,接种两剂的比例为16.9%,接种三剂的比例为47.7%。88例出现感染症状;快速检测阳性81例。共检出SaRS-CoV-2与RSV合并感染15例,SaRS-CoV-2与流感病毒合并感染1例。结论:以上呼吸道常见临床表现的GHNP急诊科患者以女性居多。与接种三剂疫苗中的三剂或最多接种一剂疫苗的患者相比,接种两剂疫苗的患者检测到SARS-CoV-2和RSV合并感染率显着降低。SARS-CoV-2和RSV病原体Ct值在10 ~ 17之间。仅1例患者同时感染SARS-CoV-2和流感。
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引用次数: 0
Association of CCND1 Gene Polymorphism rs9344 with Grade and Invasion Degree of Colorectal Cancer at Prof. Dr. I.G.N.G. Ngoerah Central General Hospital Ngoerah中心综合医院CCND1基因多态性rs9344与结直肠癌分级和侵袭程度的关系
Pub Date : 2023-04-26 DOI: 10.24018/ejbiomed.2023.2.2.58
Nanang Masrani, N. N. A. Dewi, N. Linawati, N. P. Ekawati, I. Mulyawan
The majority of colorectal cancer (CRC) are sporadic CRC that can be caused by genetic variations such as Single Nucleotide Polymorphisms (SNPs). The CCND1 gene polymorphism rs9344 could involve at the beginning and the development of CRC.This study aimed to analyze the association between CCND1 gene polymorphism rs9344 with the grade and invasion degree of colorectal cancer in at Prof. Dr. I.G.N.G. Ngoerah Central General Hospital, Denpasar, Bali. This cross-sectional study was carried out at the Integrated Biomedical Laboratory Unit, Faculty of Medicine, Udayana University.Data analysis of 32 samples showed majority age was above 50 years old as many as 28 (87.5%), with men as 21 samples (65.6%). Histopathology description was adenocarcinoma in 32 samples (100%). Grading histopathology low grade was 31 samples (96.6%). The degree of tumor invasion was high as 25 samples (78.1%). From the aspect of pathological stage pNx as much as 27 (84.4%). The majority location of tumors was on the left side as 21 samples (65.6%). The polymorphisms of CCND1 rs9344 genotype sequentially AA as 20 samples (62.5%), AG as 9 samples (28.1%), while GG as 3 samples (9.4%). The statistical analysis found that CCND1 gene polymorphism rs9344 was not associated with colorectal cancer grade (p>0.05), and not associated with invasion degrees of colorectal cancer (p>0.05).Taken together, we conclude that no significant association between the CCND1 gene polymorphism rs9344 with grade and invasion degree of colorectal cancer at Prof. Dr. I.G.N.G. Ngoerah Central General Hospital, Denpasar, Bali. 
大多数结直肠癌(CRC)是散发性CRC,可由遗传变异(如单核苷酸多态性(snp))引起。CCND1基因多态性rs9344可能参与了结直肠癌的发病和发展。本研究旨在分析CCND1基因多态性rs9344与巴厘岛Denpasar Ngoerah Central General Hospital的结直肠癌分级和侵袭程度的关系。这项横断面研究是在乌达亚那大学医学院综合生物医学实验室进行的。32份样本的数据分析显示,年龄在50岁以上的样本最多,占87.5%,其中男性21份,占65.6%。32例(100%)组织病理学描述为腺癌。组织病理学低分级31例(96.6%)。肿瘤侵袭程度高,25例(78.1%)。从病理分期来看pNx最多27例(84.4%)。多数肿瘤位于左侧,21例(65.6%)。CCND1 rs9344基因型多态性依次为AA型20例(62.5%),AG型9例(28.1%),GG型3例(9.4%)。统计分析发现,CCND1基因多态性rs9344与结直肠癌分级无关(p>0.05),与结直肠癌侵袭程度无关(p>0.05)。综上所述,我们得出结论,CCND1基因多态性rs9344与结直肠癌的分级和侵袭程度之间没有显著关联。
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引用次数: 0
IL-10 A/G rs1800896 and TNF-α G308A rs1800629 Polymorphisms and Their Relationship with the Risk of Implant Loss in Adult Patients from Argentina 阿根廷成年患者IL-10 A/G rs1800896和TNF-α G308A rs1800629多态性及其与种植体丢失风险的关系
Pub Date : 2023-04-05 DOI: 10.24018/ejbiomed.2023.2.2.59
A. Bono, J. C. Ibáñez, M. Sezin, M. Brunotto
Introduction: the results of treatment in implantology have been evaluated mainly as implant survival rates in small groups of patients selected from specialized clinical or university settings. There is evidence to support polymorphisms that could be linked to some biological complications in implantology. The results may vary according to the origin or ethnic mixtures of the population studied. The objective of this study was to analyze the relationship between the polymorphisms IL-10 A/G rs1800896 and TNF-α G308A rs1800629308 and the loss of dental implants and periodontal disease. Material and method: 140 patients were selected, 10 with implant losses within a maximum period of 6 months of their placement. Each patient voluntarily consented to participate in the study (approved by CIEIS Adult Hospital Córdoba) Filiatory and clinical data were collected in a clinical history. Samples of clinically healthy oral mucosa were obtained and genotyped by PCR and RFPL. Results: The population consisted of male and female individuals in similar proportions (p=0.6121). The average age was 53.06±16.22 years, and an age variation range of 20 to 80 years. 7.7% of the patients included in the study had loss of their implant. It was observed that 62.5% of the patients who presented loss of implants were women. Of the patients with missing implants, 75% were smokers and did not consume alcohol. On the other hand, in relation to periodontal disease only 31% presented disease. In relation to genotype, patients with lost implants had 50% of the mutated allele of the SNP TNFα rs1800629, while 50% of patients with periodontal disease were carriers of the mutated allele for SNP IL-10 rs1800896. On the other hand, considering the total population under study, 31.06% of the patients presented the genotypes with the genetic variation, AG+GG, of the IL10 rs1800896 gene; while 64.07% presented the AA and GA genotypes, (both with the mutated allele) of the TNF-α G308A rs1800629 gene. No significant association (p=0.3298) was observed between IL10 rs1800896 genotypes and periodontal disease; contrary to whether there was a significant relationship of this SNP with periodontal disease (p=0.0164). Conclusion: The polymorphisms evaluated were not predictive of the failure of dental implants. However, a significant association between periodontal disease and TNF-α rs1800629 genotype could be observed. It is noteworthy that this is the first study that describes the frequency of the SNPs studied in a population of Córdoba–Argentina.
简介:种植治疗的结果主要是通过从专业临床或大学环境中选择的小群体患者的种植体存活率来评估的。有证据支持多态性可能与种植学中的一些生物学并发症有关。结果可能会根据研究人群的起源或种族混合而有所不同。本研究的目的是分析IL-10 A/G rs1800896和TNF-α G308A rs1800629308多态性与种植体丢失和牙周病的关系。材料和方法:选择140例患者,其中10例种植体在植入后最多6个月内丢失。每位患者自愿同意参加研究(经CIEIS成人医院Córdoba批准),并收集临床病史中的临床资料。采集临床健康口腔黏膜标本,采用PCR和RFPL进行基因分型。结果:种群中男女个体比例相近(p=0.6121)。平均年龄53.06±16.22岁,年龄变化范围为20 ~ 80岁。研究中有7.7%的患者失去了种植体。我们观察到62.5%出现种植体丢失的患者是女性。在植入物缺失的患者中,75%是吸烟者,不饮酒。另一方面,在牙周病方面,只有31%的人患病。与基因型相关,丢失种植体的患者携带50%的SNP TNFα rs1800629突变等位基因,而50%的牙周病患者携带SNP IL-10 rs1800896突变等位基因。另一方面,考虑所研究的总体人群,31.06%的患者出现IL10 rs1800896基因变异为AG+GG的基因型;64.07%为TNF-α G308A rs1800629基因的AA和GA基因型(均有突变等位基因)。il - 10 rs1800896基因型与牙周病无显著相关性(p=0.3298);与该SNP与牙周病是否有显著关系相反(p=0.0164)。结论:评估的多态性不能预测种植体的失败。然而,可以观察到牙周病与TNF-α rs1800629基因型之间的显著关联。值得注意的是,这是第一个描述在Córdoba-Argentina人群中研究的snp频率的研究。
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引用次数: 0
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European journal of biomedical research
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