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Exposome-wide association study of cognition among older adults in the National Health and Nutrition Examination Survey.
Pub Date : 2025-01-28 eCollection Date: 2025-01-01 DOI: 10.1093/exposome/osaf002
Lauren Y M Middleton, Erika Walker, Scarlet Cockell, John Dou, Vy K Nguyen, Mitchell Schrank, Chirag J Patel, Erin B Ware, Justin A Colacino, Sung Kyun Park, Kelly M Bakulski

Cognitive impairment among older adults is a growing public health challenge and environmental chemicals may be modifiable risk factors. A wide array of chemicals has not yet been tested for association with cognition in an environment-wide association framework. In the US National Health and Nutrition Examination Survey (NHANES) 1999-2000 and 2011-2014 cross-sectional cycles, cognition was assessed using the Digit Symbol Substitution Test (DSST, scores 0-117) among participants aged 60 years and older. Concentrations of environmental chemicals measured in blood or urine were log2 transformed and standardized. Chemicals with at least 50% of measures above the lower limit of detection were included (nchemicals = 147, nclasses=14). We tested for associations between chemical concentrations and cognition using parallel survey-weighted multivariable linear regression models adjusted for age, sex, race/ethnicity, education, smoking status, fish consumption, cycle year, urinary creatinine, and cotinine. Participants with at least one chemical measurement (n = 4982) were mean age 69.8 years, 55.0% female, 78.2% non-Hispanic White, and 77.0% at least high school educated. The mean DSST score was 50.4 (standard deviation (SD)=17.4). In adjusted analyses, 5 of 147 exposures were associated with DSST at P-value <.01. Notably, a SD increase in log2-scaled cotinine concentration was associated with 2.71 points lower DSST score (95% CI -3.69, -1.73). A SD increase in log2-scaled urinary tungsten concentration was associated with 1.34 points lower DSST score (95% CI -2.11, -0.56). Exposure to environmental chemicals, particularly metals and tobacco smoke, may be modifiable factors for cognition among older adults.

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引用次数: 0
An evolutionary perspective for the exposome.
Pub Date : 2024-12-04 eCollection Date: 2024-02-09 DOI: 10.1093/exposome/osae008
Paolo Vineis, Sonia Dagnino

The exposome was proposed following the realization that most human diseases have an environmental rather than a genetic (hereditary) origin. Non-communicable diseases are, in fact, the consequence of multiple exposures that activate a sequence of stages in a multistage process that already starts in early life. This attracted attention to both the multiplicity (in fact, potentially the totality) of exposures humans are exposed to since conception and to the life-long perspective of disease causation. In this paper, we examine an extension of the exposome concept that incorporates a Darwinian approach based on the concept of phenotypic plasticity. One of the theses is that interpreting exposome science as "precision environmental research" is only a partial interpretation, largely focused on chemical exposures, while a broadening of the perspective is needed, also in light of the planetary crisis. Such broadening involves the incorporation of basic concepts from evolutionary biology and medicine, including the ability of organisms to adapt to rapidly changing environments. We refer in particular to cancer and "Darwinian carcinogenesis."

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引用次数: 0
Use, limitations, and future directions of mixtures approaches to understand the health impacts of weather- and climate change-related exposures, an under-studied aspect of the exposome. 使用混合物方法了解与天气和气候变化有关的暴露对健康的影响、其局限性和未来方向,这是暴露体中研究不足的一个方面。
Pub Date : 2024-10-16 eCollection Date: 2024-01-01 DOI: 10.1093/exposome/osae007
Vivian Do, Robbie M Parks, Joan A Casey, Dana E Goin, Marianthi-Anna Kioumourtzoglou

The exposome concept aims to account for the comprehensive and cumulative effects of physical, chemical, biological, and psychosocial influences on biological systems. To date, limited exposome research has explicitly included climate change-related exposures. We define these exposures as those that will intensify with climate change, including direct effects like extreme heat, tropical cyclones, wildfires, downstream effects like air pollution, power outages, and limited or contaminated food and water supplies. These climate change-related exposures can occur individually or simultaneously. Here, we discuss the concept of a climate mixture, defined as three or more simultaneous climate change-related exposures, in the context of the exposome. In a motivating climate mixture example, we consider the impact of a co-occurring tropical cyclone, power outage, and flooding on respiratory hospitalizations. We identify current gaps and future directions for assessing the effect of climate mixtures on health. Mixtures methods allow us to incorporate climate mixtures into exposomics.

暴露组概念旨在说明物理、化学、生物和社会心理影响对生物系统的综合累积效应。迄今为止,暴露组研究中明确包括与气候变化相关的暴露的还很有限。我们将这些暴露定义为随着气候变化而加剧的暴露,包括极端高温、热带气旋、野火等直接影响,以及空气污染、停电、食物和水供应受限或污染等下游影响。这些与气候变化相关的影响可能单独发生,也可能同时发生。在此,我们将在暴露体的背景下讨论气候混合物的概念,即三种或三种以上同时发生的与气候变化相关的暴露。在一个有启发性的气候混合物例子中,我们考虑了同时发生的热带气旋、停电和洪水对呼吸道住院治疗的影响。我们确定了评估气候混合物对健康影响的当前差距和未来方向。混合物方法使我们能够将气候混合物纳入暴露研究。
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引用次数: 0
Exposomics: perfection not required. Exposomics: 不要求完美。
Pub Date : 2024-10-04 eCollection Date: 2024-01-01 DOI: 10.1093/exposome/osae006
Gary W Miller
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引用次数: 0
A long and winding road: Culture change on data sharing in exposomics 漫长而曲折的道路:世卫组织数据共享的文化变革
Pub Date : 2024-04-13 DOI: 10.1093/exposome/osae004
Robert O Wright, Konstantinos C Makris, P. Natsiavas, Timothy Fennel, Blake R Rushing, Ander Wilson
Data sharing requires cooperation from data generators (e.g., epidemiologists, lab investigators) and data users (e.g., epidemiologists, biostatisticians, computer scientists). Data generation and data use in human exposome studies require significant but different skill sets and are separated temporally in many cases. Sharing will require maintaining a history of data generation and a system to address the concerns of data generators around credit for conducting rigorous work (e.g., authorship). Sharing also requires addressing the needs of data users to facilitate harmonization, searchability and QA/QC of data. We present these issues from the perspectives of data generators and data users and include the special case of real-world data (e.g., electronic health records). We conclude with recommendations to address how to better promote data sharing in exposomics through authorship, cost recovery and addressing ethical issues.
数据共享需要数据生成者(如流行病学家、实验室研究人员)和数据使用者(如流行病学家、生物统计学家、计算机科学家)的合作。人类暴露组研究中的数据生成和数据使用需要大量不同的技能组合,而且在许多情况下时间上是分离的。要实现共享,就必须保留数据生成的历史记录,并建立一个系统来解决数据生成者对开展严谨工作所获得的荣誉(如作者身份)的担忧。共享还需要满足数据用户的需求,以促进数据的统一、可搜索性和质量保证/质量控制。我们从数据生成者和数据使用者的角度来阐述这些问题,并包括真实世界数据(如电子健康记录)的特殊情况。最后,我们就如何通过作者身份、成本回收和解决伦理问题更好地促进暴露组学中的数据共享提出了建议。
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引用次数: 0
Interactive data sharing for multiple questionnaire-based exposome-wide association studies and exposome correlations in the Personalized Environment and Genes Study. 个性化环境与基因研究中基于多份问卷的暴露组关联研究和暴露组相关性的交互式数据共享。
Pub Date : 2024-02-12 eCollection Date: 2024-01-01 DOI: 10.1093/exposome/osae003
Dillon Lloyd, John S House, Farida S Akhtari, Charles P Schmitt, David C Fargo, Elizabeth H Scholl, Jason Phillips, Shail Choksi, Ruchir Shah, Janet E Hall, Alison A Motsinger-Reif

The correlations among individual exposures in the exposome, which refers to all exposures an individual encounters throughout life, are important for understanding the landscape of how exposures co-occur, and how this impacts health and disease. Exposome-wide association studies (ExWAS), which are analogous to genome-wide association studies (GWAS), are increasingly being used to elucidate links between the exposome and disease. Despite increased interest in the exposome, tools and publications that characterize exposure correlations and their relationships with human disease are limited, and there is a lack of data and results sharing in resources like the GWAS catalog. To address these gaps, we developed the PEGS Explorer web application to explore exposure correlations in data from the diverse North Carolina-based Personalized Environment and Genes Study (PEGS) that were rigorously calculated to account for differing data types and previously published results from ExWAS. Through globe visualizations, PEGS Explorer allows users to explore correlations between exposures found to be associated with complex diseases. The exposome data used for analysis includes not only standard environmental exposures such as point source pollution and ozone levels but also exposures from diet, medication, lifestyle factors, stress, and occupation. The web application addresses the lack of accessible data and results sharing, a major challenge in the field, and enables users to put results in context, generate hypotheses, and, importantly, replicate findings in other cohorts. PEGS Explorer will be updated with additional results as they become available, ensuring it is an up-to-date resource in exposome science.

暴露组是指个体一生中接触到的所有暴露,暴露组中个体暴露之间的相关性对于了解暴露如何共存以及如何影响健康和疾病非常重要。全暴露体关联研究(ExWAS)类似于全基因组关联研究(GWAS),越来越多地被用于阐明暴露体与疾病之间的联系。尽管人们对暴露组的兴趣与日俱增,但描述暴露相关性及其与人类疾病关系的工具和出版物却十分有限,而且缺乏像 GWAS 目录这样的数据和结果共享资源。为了填补这些空白,我们开发了 PEGS Explorer 网络应用程序,以探索来自北卡罗来纳州个性化环境与基因研究(PEGS)的各种数据中的暴露相关性,这些数据经过严格计算,考虑到了不同的数据类型和以前发表的 ExWAS 结果。通过全球可视化,PEGS Explorer 允许用户探索发现与复杂疾病相关的暴露之间的相关性。用于分析的暴露组数据不仅包括点源污染和臭氧水平等标准环境暴露,还包括饮食、药物、生活方式因素、压力和职业等暴露。该网络应用程序解决了该领域面临的主要挑战--缺乏可访问的数据和结果共享的问题,使用户能够将结果置于上下文中,提出假设,更重要的是,在其他队列中复制研究结果。PEGS Explorer 将在有更多结果时及时更新,确保它成为暴露组科学的最新资源。
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引用次数: 0
Questionnaire-based exposome-wide association studies for common diseases in the Personalized Environment and Genes Study. 在个性化环境与基因研究中,对常见疾病进行基于问卷的全暴露关联研究。
Pub Date : 2024-02-12 eCollection Date: 2024-01-01 DOI: 10.1093/exposome/osae002
Dillon Lloyd, John S House, Farida S Akhtari, Charles P Schmitt, David C Fargo, Elizabeth H Scholl, Jason Phillips, Shail Choksi, Ruchir Shah, Janet E Hall, Alison A Motsinger-Reif

The exposome collectively refers to all exposures, beginning in utero and continuing throughout life, and comprises not only standard environmental exposures such as point source pollution and ozone levels but also exposures from diet, medication, lifestyle factors, stress, and occupation. The exposome interacts with individual genetic and epigenetic characteristics to affect human health and disease, but large-scale studies that characterize the exposome and its relationships with human disease are limited. To address this gap, we used extensive questionnaire data from the diverse North Carolina-based Personalized Environment and Genes Study (PEGS, n = 9, 429) to evaluate exposure associations in relation to common diseases. We performed an exposome-wide association study (ExWAS) to examine single exposure models and their associations with 11 common complex diseases, namely allergic rhinitis, asthma, bone loss, fibroids, high cholesterol, hypertension, iron-deficient anemia, ovarian cysts, lower GI polyps, migraines, and type 2 diabetes. Across diseases, we found associations with lifestyle factors and socioeconomic status as well as asbestos, various dust types, biohazardous material, and textile-related exposures. We also found disease-specific associations such as fishing with lead weights and migraines. To differentiate between a replicated result and a novel finding, we used an AI-based literature search and database tool that allowed us to examine the current literature. We found both replicated findings, especially for lifestyle factors such as sleep and smoking across diseases, and novel findings, especially for occupational exposures and multiple diseases.

暴露体是指从子宫内开始并持续一生的所有暴露,不仅包括点源污染和臭氧水平等标准环境暴露,还包括饮食、药物、生活方式因素、压力和职业等暴露。暴露组与个体遗传和表观遗传特征相互作用,影响人类健康和疾病,但描述暴露组特征及其与人类疾病关系的大规模研究非常有限。为了填补这一空白,我们使用了来自北卡罗来纳州个性化环境与基因研究(PEGS,n = 9,429)的大量问卷数据,以评估暴露与常见疾病的关系。我们进行了一项全暴露体关联研究(ExWAS),研究了单一暴露模型及其与 11 种常见复杂疾病的关联,即过敏性鼻炎、哮喘、骨质疏松、子宫肌瘤、高胆固醇、高血压、缺铁性贫血、卵巢囊肿、下消化道息肉、偏头痛和 2 型糖尿病。在各种疾病中,我们发现与生活方式因素、社会经济地位以及石棉、各种粉尘、生物危险材料和纺织品相关接触有关。我们还发现了与特定疾病的关联,如钓鱼与铅重和偏头痛。为了区分重复结果和新发现,我们使用了一种基于人工智能的文献搜索和数据库工具,该工具允许我们检查当前的文献。我们既发现了重复结果,尤其是睡眠和吸烟等生活方式因素与不同疾病的关系,也发现了新发现,尤其是职业暴露与多种疾病的关系。
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引用次数: 0
Decoding the exposome: Data science methodologies and implications in Exposome-Wide association studies (ExWASs) 解码暴露组:全暴露组关联研究(ExWASs)中的数据科学方法及其影响
Pub Date : 2024-01-17 DOI: 10.1093/exposome/osae001
Ming Kei Chung, John S. House, F. Akhtari, Konstantinos C Makris, Michael A. Langston, Khandaker Talat Islam, Philip Holmes, Marc Chadeau-Hyam, Alex I Smirnov, Xiuxia Du, Anne E Thessen, Yuxia Cui, Kai Zhang, Arjun K. Manrai, Alison Motsinger-Reif, Chirag J Patel
This paper explores the exposome concept and its role in elucidating the interplay between environmental exposures and human health. We introduce two key concepts critical for exposomics research. Firstly, we discuss the joint impact of genetics and environment on phenotypes, emphasizing the variance attributable to shared and non-shared environmental factors, underscoring the complexity of quantifying the exposome's influence on health outcomes. Secondly, we introduce the importance of advanced data-driven methods in large cohort studies for exposomic measurements. Here, we introduce the exposome-wide association study (ExWAS), an approach designed for systematic discovery of relationships between phenotypes and various exposures, identifying significant associations while controlling for multiple comparisons. We advocate for the standardized use of the term “exposome-wide association study, ExWAS,” to facilitate clear communication and literature retrieval in this field. The paper aims to guide future health researchers in understanding and evaluating exposomic studies. Our discussion extends to emerging topics, such as FAIR Data Principles, biobanked healthcare datasets, and the functional exposome, outlining the future directions in exposomic research. This abstract provides a succinct overview of our comprehensive approach to understanding the complex dynamics of the exposome and its significant implications for human health.
本文探讨了暴露体概念及其在阐明环境暴露与人类健康之间相互作用方面的作用。我们介绍了对暴露体研究至关重要的两个关键概念。首先,我们讨论了遗传和环境对表型的共同影响,强调了可归因于共有和非共有环境因素的变异,突出了量化暴露体对健康结果影响的复杂性。其次,我们介绍了在大型队列研究中采用先进的数据驱动方法进行暴露组测量的重要性。在这里,我们介绍了全暴露组关联研究(ExWAS),这种方法旨在系统地发现表型与各种暴露之间的关系,在控制多重比较的同时确定显著的关联。我们提倡标准化使用 "全暴露体关联研究,ExWAS "这一术语,以促进该领域的清晰交流和文献检索。本文旨在指导未来的健康研究人员理解和评估暴露组学研究。我们的讨论延伸到了新出现的话题,如 FAIR 数据原则、生物库医疗数据集和功能性暴露组,勾勒出了暴露组研究的未来方向。本摘要简明扼要地概述了我们理解暴露组复杂动态及其对人类健康重大影响的综合方法。
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引用次数: 0
The exposome at NIEHS: from workshops to manuscripts. NIEHS的暴露:从工作坊到手稿。
Pub Date : 2023-11-30 eCollection Date: 2023-01-01 DOI: 10.1093/exposome/osad011
Gary W Miller
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引用次数: 0
The Exposome and Nutritional Pharmacology and Toxicology: A New Application for Metabolomics 暴露体与营养药理学和毒理学:代谢组学的新应用
Pub Date : 2023-11-23 DOI: 10.1093/exposome/osad008
Blake R Rushing, A. Thessen, Ghada A Soliman, A. Ramesh, Susan J. Sumner
The exposome refers to all of the internal and external life-long exposures that an individual experiences. These exposures, either acute or chronic, are associated with changes in metabolism that will positively or negatively influence the health and well-being of individuals. Nutrients and other dietary compounds modulate similar biochemical processes and have the potential in some cases to counteract the negative effects of exposures or enhance their beneficial effects. We present herein the concept of Nutritional Pharmacology/Toxicology which uses high-information metabolomics workflows to identify metabolic targets associated with exposures. Using this information, nutritional interventions can be designed toward those targets to mitigate adverse effects or enhance positive effects. We also discuss the potential for this approach in precision nutrition where nutrients/diet can be used to target gene-environment interactions and other subpopulation characteristics. Deriving these “nutrient cocktails” presents an opportunity to modify the effects of exposures for more beneficial outcomes in public health.
暴露体指的是一个人终生经历的所有内部和外部暴露。这些暴露,无论是急性还是慢性,都与新陈代谢的变化有关,会对个人的健康和福祉产生积极或消极的影响。营养素和其他膳食化合物会调节类似的生化过程,在某些情况下有可能抵消暴露的负面影响或增强其有益作用。我们在此提出营养药理学/毒理学的概念,它利用高信息代谢组学工作流程来确定与暴露相关的代谢目标。利用这些信息,可以针对这些靶点设计营养干预措施,以减轻不良影响或增强积极作用。我们还讨论了这种方法在精准营养学中的应用潜力,在精准营养学中,营养素/饮食可用于针对基因-环境相互作用和其他亚人群特征。这些 "鸡尾酒营养素 "的产生为改变暴露效应以获得更有益的公共健康结果提供了机会。
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引用次数: 0
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