Pub Date : 2024-02-12eCollection Date: 2024-01-01DOI: 10.1093/exposome/osae003
Dillon Lloyd, John S House, Farida S Akhtari, Charles P Schmitt, David C Fargo, Elizabeth H Scholl, Jason Phillips, Shail Choksi, Ruchir Shah, Janet E Hall, Alison A Motsinger-Reif
The correlations among individual exposures in the exposome, which refers to all exposures an individual encounters throughout life, are important for understanding the landscape of how exposures co-occur, and how this impacts health and disease. Exposome-wide association studies (ExWAS), which are analogous to genome-wide association studies (GWAS), are increasingly being used to elucidate links between the exposome and disease. Despite increased interest in the exposome, tools and publications that characterize exposure correlations and their relationships with human disease are limited, and there is a lack of data and results sharing in resources like the GWAS catalog. To address these gaps, we developed the PEGS Explorer web application to explore exposure correlations in data from the diverse North Carolina-based Personalized Environment and Genes Study (PEGS) that were rigorously calculated to account for differing data types and previously published results from ExWAS. Through globe visualizations, PEGS Explorer allows users to explore correlations between exposures found to be associated with complex diseases. The exposome data used for analysis includes not only standard environmental exposures such as point source pollution and ozone levels but also exposures from diet, medication, lifestyle factors, stress, and occupation. The web application addresses the lack of accessible data and results sharing, a major challenge in the field, and enables users to put results in context, generate hypotheses, and, importantly, replicate findings in other cohorts. PEGS Explorer will be updated with additional results as they become available, ensuring it is an up-to-date resource in exposome science.
暴露组是指个体一生中接触到的所有暴露,暴露组中个体暴露之间的相关性对于了解暴露如何共存以及如何影响健康和疾病非常重要。全暴露体关联研究(ExWAS)类似于全基因组关联研究(GWAS),越来越多地被用于阐明暴露体与疾病之间的联系。尽管人们对暴露组的兴趣与日俱增,但描述暴露相关性及其与人类疾病关系的工具和出版物却十分有限,而且缺乏像 GWAS 目录这样的数据和结果共享资源。为了填补这些空白,我们开发了 PEGS Explorer 网络应用程序,以探索来自北卡罗来纳州个性化环境与基因研究(PEGS)的各种数据中的暴露相关性,这些数据经过严格计算,考虑到了不同的数据类型和以前发表的 ExWAS 结果。通过全球可视化,PEGS Explorer 允许用户探索发现与复杂疾病相关的暴露之间的相关性。用于分析的暴露组数据不仅包括点源污染和臭氧水平等标准环境暴露,还包括饮食、药物、生活方式因素、压力和职业等暴露。该网络应用程序解决了该领域面临的主要挑战--缺乏可访问的数据和结果共享的问题,使用户能够将结果置于上下文中,提出假设,更重要的是,在其他队列中复制研究结果。PEGS Explorer 将在有更多结果时及时更新,确保它成为暴露组科学的最新资源。
{"title":"Interactive data sharing for multiple questionnaire-based exposome-wide association studies and exposome correlations in the Personalized Environment and Genes Study.","authors":"Dillon Lloyd, John S House, Farida S Akhtari, Charles P Schmitt, David C Fargo, Elizabeth H Scholl, Jason Phillips, Shail Choksi, Ruchir Shah, Janet E Hall, Alison A Motsinger-Reif","doi":"10.1093/exposome/osae003","DOIUrl":"10.1093/exposome/osae003","url":null,"abstract":"<p><p>The correlations among individual exposures in the exposome, which refers to all exposures an individual encounters throughout life, are important for understanding the landscape of how exposures co-occur, and how this impacts health and disease. Exposome-wide association studies (ExWAS), which are analogous to genome-wide association studies (GWAS), are increasingly being used to elucidate links between the exposome and disease. Despite increased interest in the exposome, tools and publications that characterize exposure correlations and their relationships with human disease are limited, and there is a lack of data and results sharing in resources like the GWAS catalog. To address these gaps, we developed the PEGS Explorer web application to explore exposure correlations in data from the diverse North Carolina-based Personalized Environment and Genes Study (PEGS) that were rigorously calculated to account for differing data types and previously published results from ExWAS. Through globe visualizations, PEGS Explorer allows users to explore correlations between exposures found to be associated with complex diseases. The exposome data used for analysis includes not only standard environmental exposures such as point source pollution and ozone levels but also exposures from diet, medication, lifestyle factors, stress, and occupation. The web application addresses the lack of accessible data and results sharing, a major challenge in the field, and enables users to put results in context, generate hypotheses, and, importantly, replicate findings in other cohorts. PEGS Explorer will be updated with additional results as they become available, ensuring it is an up-to-date resource in exposome science.</p>","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"4 1","pages":"osae003"},"PeriodicalIF":0.0,"publicationDate":"2024-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10899804/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139998492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-12eCollection Date: 2024-01-01DOI: 10.1093/exposome/osae002
Dillon Lloyd, John S House, Farida S Akhtari, Charles P Schmitt, David C Fargo, Elizabeth H Scholl, Jason Phillips, Shail Choksi, Ruchir Shah, Janet E Hall, Alison A Motsinger-Reif
The exposome collectively refers to all exposures, beginning in utero and continuing throughout life, and comprises not only standard environmental exposures such as point source pollution and ozone levels but also exposures from diet, medication, lifestyle factors, stress, and occupation. The exposome interacts with individual genetic and epigenetic characteristics to affect human health and disease, but large-scale studies that characterize the exposome and its relationships with human disease are limited. To address this gap, we used extensive questionnaire data from the diverse North Carolina-based Personalized Environment and Genes Study (PEGS, n = 9, 429) to evaluate exposure associations in relation to common diseases. We performed an exposome-wide association study (ExWAS) to examine single exposure models and their associations with 11 common complex diseases, namely allergic rhinitis, asthma, bone loss, fibroids, high cholesterol, hypertension, iron-deficient anemia, ovarian cysts, lower GI polyps, migraines, and type 2 diabetes. Across diseases, we found associations with lifestyle factors and socioeconomic status as well as asbestos, various dust types, biohazardous material, and textile-related exposures. We also found disease-specific associations such as fishing with lead weights and migraines. To differentiate between a replicated result and a novel finding, we used an AI-based literature search and database tool that allowed us to examine the current literature. We found both replicated findings, especially for lifestyle factors such as sleep and smoking across diseases, and novel findings, especially for occupational exposures and multiple diseases.
{"title":"Questionnaire-based exposome-wide association studies for common diseases in the Personalized Environment and Genes Study.","authors":"Dillon Lloyd, John S House, Farida S Akhtari, Charles P Schmitt, David C Fargo, Elizabeth H Scholl, Jason Phillips, Shail Choksi, Ruchir Shah, Janet E Hall, Alison A Motsinger-Reif","doi":"10.1093/exposome/osae002","DOIUrl":"10.1093/exposome/osae002","url":null,"abstract":"<p><p>The exposome collectively refers to all exposures, beginning <i>in utero</i> and continuing throughout life, and comprises not only standard environmental exposures such as point source pollution and ozone levels but also exposures from diet, medication, lifestyle factors, stress, and occupation. The exposome interacts with individual genetic and epigenetic characteristics to affect human health and disease, but large-scale studies that characterize the exposome and its relationships with human disease are limited. To address this gap, we used extensive questionnaire data from the diverse North Carolina-based Personalized Environment and Genes Study (PEGS, n = 9, 429) to evaluate exposure associations in relation to common diseases. We performed an exposome-wide association study (ExWAS) to examine single exposure models and their associations with 11 common complex diseases, namely allergic rhinitis, asthma, bone loss, fibroids, high cholesterol, hypertension, iron-deficient anemia, ovarian cysts, lower GI polyps, migraines, and type 2 diabetes. Across diseases, we found associations with lifestyle factors and socioeconomic status as well as asbestos, various dust types, biohazardous material, and textile-related exposures. We also found disease-specific associations such as fishing with lead weights and migraines. To differentiate between a replicated result and a novel finding, we used an AI-based literature search and database tool that allowed us to examine the current literature. We found both replicated findings, especially for lifestyle factors such as sleep and smoking across diseases, and novel findings, especially for occupational exposures and multiple diseases.</p>","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"4 1","pages":"osae002"},"PeriodicalIF":0.0,"publicationDate":"2024-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10914401/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140051239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-17DOI: 10.1093/exposome/osae001
Ming Kei Chung, John S. House, F. Akhtari, Konstantinos C Makris, Michael A. Langston, Khandaker Talat Islam, Philip Holmes, Marc Chadeau-Hyam, Alex I Smirnov, Xiuxia Du, Anne E Thessen, Yuxia Cui, Kai Zhang, Arjun K. Manrai, Alison Motsinger-Reif, Chirag J Patel
This paper explores the exposome concept and its role in elucidating the interplay between environmental exposures and human health. We introduce two key concepts critical for exposomics research. Firstly, we discuss the joint impact of genetics and environment on phenotypes, emphasizing the variance attributable to shared and non-shared environmental factors, underscoring the complexity of quantifying the exposome's influence on health outcomes. Secondly, we introduce the importance of advanced data-driven methods in large cohort studies for exposomic measurements. Here, we introduce the exposome-wide association study (ExWAS), an approach designed for systematic discovery of relationships between phenotypes and various exposures, identifying significant associations while controlling for multiple comparisons. We advocate for the standardized use of the term “exposome-wide association study, ExWAS,” to facilitate clear communication and literature retrieval in this field. The paper aims to guide future health researchers in understanding and evaluating exposomic studies. Our discussion extends to emerging topics, such as FAIR Data Principles, biobanked healthcare datasets, and the functional exposome, outlining the future directions in exposomic research. This abstract provides a succinct overview of our comprehensive approach to understanding the complex dynamics of the exposome and its significant implications for human health.
{"title":"Decoding the exposome: Data science methodologies and implications in Exposome-Wide association studies (ExWASs)","authors":"Ming Kei Chung, John S. House, F. Akhtari, Konstantinos C Makris, Michael A. Langston, Khandaker Talat Islam, Philip Holmes, Marc Chadeau-Hyam, Alex I Smirnov, Xiuxia Du, Anne E Thessen, Yuxia Cui, Kai Zhang, Arjun K. Manrai, Alison Motsinger-Reif, Chirag J Patel","doi":"10.1093/exposome/osae001","DOIUrl":"https://doi.org/10.1093/exposome/osae001","url":null,"abstract":"\u0000 This paper explores the exposome concept and its role in elucidating the interplay between environmental exposures and human health. We introduce two key concepts critical for exposomics research. Firstly, we discuss the joint impact of genetics and environment on phenotypes, emphasizing the variance attributable to shared and non-shared environmental factors, underscoring the complexity of quantifying the exposome's influence on health outcomes. Secondly, we introduce the importance of advanced data-driven methods in large cohort studies for exposomic measurements. Here, we introduce the exposome-wide association study (ExWAS), an approach designed for systematic discovery of relationships between phenotypes and various exposures, identifying significant associations while controlling for multiple comparisons. We advocate for the standardized use of the term “exposome-wide association study, ExWAS,” to facilitate clear communication and literature retrieval in this field. The paper aims to guide future health researchers in understanding and evaluating exposomic studies. Our discussion extends to emerging topics, such as FAIR Data Principles, biobanked healthcare datasets, and the functional exposome, outlining the future directions in exposomic research. This abstract provides a succinct overview of our comprehensive approach to understanding the complex dynamics of the exposome and its significant implications for human health.","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"59 50","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139527232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-30eCollection Date: 2023-01-01DOI: 10.1093/exposome/osad011
Gary W Miller
{"title":"The exposome at NIEHS: from workshops to manuscripts.","authors":"Gary W Miller","doi":"10.1093/exposome/osad011","DOIUrl":"10.1093/exposome/osad011","url":null,"abstract":"","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"3 1","pages":"osad011"},"PeriodicalIF":0.0,"publicationDate":"2023-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10689254/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138479717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-23DOI: 10.1093/exposome/osad008
Blake R Rushing, A. Thessen, Ghada A Soliman, A. Ramesh, Susan J. Sumner
The exposome refers to all of the internal and external life-long exposures that an individual experiences. These exposures, either acute or chronic, are associated with changes in metabolism that will positively or negatively influence the health and well-being of individuals. Nutrients and other dietary compounds modulate similar biochemical processes and have the potential in some cases to counteract the negative effects of exposures or enhance their beneficial effects. We present herein the concept of Nutritional Pharmacology/Toxicology which uses high-information metabolomics workflows to identify metabolic targets associated with exposures. Using this information, nutritional interventions can be designed toward those targets to mitigate adverse effects or enhance positive effects. We also discuss the potential for this approach in precision nutrition where nutrients/diet can be used to target gene-environment interactions and other subpopulation characteristics. Deriving these “nutrient cocktails” presents an opportunity to modify the effects of exposures for more beneficial outcomes in public health.
{"title":"The Exposome and Nutritional Pharmacology and Toxicology: A New Application for Metabolomics","authors":"Blake R Rushing, A. Thessen, Ghada A Soliman, A. Ramesh, Susan J. Sumner","doi":"10.1093/exposome/osad008","DOIUrl":"https://doi.org/10.1093/exposome/osad008","url":null,"abstract":"The exposome refers to all of the internal and external life-long exposures that an individual experiences. These exposures, either acute or chronic, are associated with changes in metabolism that will positively or negatively influence the health and well-being of individuals. Nutrients and other dietary compounds modulate similar biochemical processes and have the potential in some cases to counteract the negative effects of exposures or enhance their beneficial effects. We present herein the concept of Nutritional Pharmacology/Toxicology which uses high-information metabolomics workflows to identify metabolic targets associated with exposures. Using this information, nutritional interventions can be designed toward those targets to mitigate adverse effects or enhance positive effects. We also discuss the potential for this approach in precision nutrition where nutrients/diet can be used to target gene-environment interactions and other subpopulation characteristics. Deriving these “nutrient cocktails” presents an opportunity to modify the effects of exposures for more beneficial outcomes in public health.","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"37 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139242989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-16DOI: 10.1093/exposome/osad009
Jeanette A Stingone, Andrew M Geller, D. Hood, Konstantinos C Makris, Charles P Mouton, J. C. States, Susan J. Sumner, K. L. Wu, Arcot K Rajasekar
Environmental factors affecting health and vulnerability far outweigh genetics in accounting for disparities in health status and longevity in US communities. The concept of the exposome, the totality of exposure from conception onwards, provides a paradigm for researchers to investigate the complex role of the environment on the health of individuals. We propose a complementary framework, community-level exposomics, for population-level exposome assessment. The goal is to bring the exposome paradigm to research and practice on the health of populations, defined by various axes including geographic, social, and occupational. This framework includes the integration of community-level measures of the built, natural and social environments, environmental pollution-derived from conventional and community science approaches, internal markers of exposure that can be measured at the population-level and early responses associated with health status that can be tracked using population-based monitoring. Primary challenges to the implementation of the proposed framework include needed advancements in population-level measurement, lack of existing models with the capability to produce interpretable and actionable evidence and the ethical considerations of labeling geographically-bound populations by exposomic profiles. To address these challenges, we propose a set of recommendations that begin with greater engagement with and empowerment of affected communities and targeted investment in community-based solutions. Applications to urban settings and disaster epidemiology are discussed as examples for implementation.
{"title":"Community-level exposomics: A population-centered approach to address public health concerns","authors":"Jeanette A Stingone, Andrew M Geller, D. Hood, Konstantinos C Makris, Charles P Mouton, J. C. States, Susan J. Sumner, K. L. Wu, Arcot K Rajasekar","doi":"10.1093/exposome/osad009","DOIUrl":"https://doi.org/10.1093/exposome/osad009","url":null,"abstract":"Environmental factors affecting health and vulnerability far outweigh genetics in accounting for disparities in health status and longevity in US communities. The concept of the exposome, the totality of exposure from conception onwards, provides a paradigm for researchers to investigate the complex role of the environment on the health of individuals. We propose a complementary framework, community-level exposomics, for population-level exposome assessment. The goal is to bring the exposome paradigm to research and practice on the health of populations, defined by various axes including geographic, social, and occupational. This framework includes the integration of community-level measures of the built, natural and social environments, environmental pollution-derived from conventional and community science approaches, internal markers of exposure that can be measured at the population-level and early responses associated with health status that can be tracked using population-based monitoring. Primary challenges to the implementation of the proposed framework include needed advancements in population-level measurement, lack of existing models with the capability to produce interpretable and actionable evidence and the ethical considerations of labeling geographically-bound populations by exposomic profiles. To address these challenges, we propose a set of recommendations that begin with greater engagement with and empowerment of affected communities and targeted investment in community-based solutions. Applications to urban settings and disaster epidemiology are discussed as examples for implementation.","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"258 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139269232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-14DOI: 10.1093/exposome/osad010
Charles P Schmitt, Jeanette A Stingone, Arcot Rajasekar, Yuxia Cui, Xiuxia Du, Chris Duncan, Michelle Heacock, Hui Hu, Juan R Gonzalez, Paul D Juarez, Alex I Smirnov
Abstract The scale of the human exposome, which covers all environmental exposures encountered from conception to death, presents major challenges in managing, sharing, and integrating a myriad of relevant data types and available data sets for the benefit of exposomics research and public health. By addressing these challenges, the exposomics research community will be able to greatly expand on its ability to aggregate study data for new discoveries, construct and update novel exposomics data sets for building artificial intelligence and machine learning-based models, rapidly survey emerging issues, and advance the application of data-driven science. The diversity of the field, which spans multiple subfields of science disciplines and different environmental contexts, necessitates adopting data federation approaches to bridge between numerous geographically and administratively separated data resources that have varying usage, privacy, access, analysis, and discoverability capabilities and constraints. This paper presents use cases, challenges, opportunities, and recommendations for the exposomics community to establish and mature a federated exposomics data ecosystem.
{"title":"A roadmap to advance exposomics through federation of data","authors":"Charles P Schmitt, Jeanette A Stingone, Arcot Rajasekar, Yuxia Cui, Xiuxia Du, Chris Duncan, Michelle Heacock, Hui Hu, Juan R Gonzalez, Paul D Juarez, Alex I Smirnov","doi":"10.1093/exposome/osad010","DOIUrl":"https://doi.org/10.1093/exposome/osad010","url":null,"abstract":"Abstract The scale of the human exposome, which covers all environmental exposures encountered from conception to death, presents major challenges in managing, sharing, and integrating a myriad of relevant data types and available data sets for the benefit of exposomics research and public health. By addressing these challenges, the exposomics research community will be able to greatly expand on its ability to aggregate study data for new discoveries, construct and update novel exposomics data sets for building artificial intelligence and machine learning-based models, rapidly survey emerging issues, and advance the application of data-driven science. The diversity of the field, which spans multiple subfields of science disciplines and different environmental contexts, necessitates adopting data federation approaches to bridge between numerous geographically and administratively separated data resources that have varying usage, privacy, access, analysis, and discoverability capabilities and constraints. This paper presents use cases, challenges, opportunities, and recommendations for the exposomics community to establish and mature a federated exposomics data ecosystem.","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"114 21","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134957328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-08-18DOI: 10.1093/exposome/osad007
Dagny Aurich, Aida Horaniet Ibañez, C. Hissler, Simon Kreipl, L. Pfister, Emma L. Schymanski, A. Fickers
The exposome complements information captured in the genome by covering all external influences and internal (biological) responses of a human being from conception onwards. Such a paradigm goes beyond a single scientific discipline and instead requires a truly interdisciplinary approach. The concept of “historical exposomics” could help bridge the gap between “nature” and “nurture” using both natural and social archives to capture the influence of humans on earth (the Anthropocene) in an interdisciplinary manner. The LuxTIME project served as a test bed for an interdisciplinary exploration of the historical exposome, focusing on the Belval area located in the Minett region in southern Luxembourg. This area evolved from a source of mineral water to steel production through to the current campus for research and development. This article explores the various possibilities of natural and social archives that were considered in creating the historical exposome of Belval and reflects upon possibilities and limitations of the current approaches in assessing the exposome using purely a natural science approach. Issues surrounding significance, visualization, and availability of material suitable to form natural archives are discussed in a critical manner. The “Minett Stories” are presented as a way of creating new historical narratives to support exposome research. New research perspectives on the history of the Anthropocene were opened by investigating the causal relationships between factual evidence and narrative evidence stemming from historical sources. The concept of historical exposome presented here may thus offer a useful conceptual framework for studying the Anthropocene in a truly interdisciplinary fashion.
{"title":"Historical Exposomics: A Manifesto","authors":"Dagny Aurich, Aida Horaniet Ibañez, C. Hissler, Simon Kreipl, L. Pfister, Emma L. Schymanski, A. Fickers","doi":"10.1093/exposome/osad007","DOIUrl":"https://doi.org/10.1093/exposome/osad007","url":null,"abstract":"\u0000 The exposome complements information captured in the genome by covering all external influences and internal (biological) responses of a human being from conception onwards. Such a paradigm goes beyond a single scientific discipline and instead requires a truly interdisciplinary approach. The concept of “historical exposomics” could help bridge the gap between “nature” and “nurture” using both natural and social archives to capture the influence of humans on earth (the Anthropocene) in an interdisciplinary manner. The LuxTIME project served as a test bed for an interdisciplinary exploration of the historical exposome, focusing on the Belval area located in the Minett region in southern Luxembourg. This area evolved from a source of mineral water to steel production through to the current campus for research and development. This article explores the various possibilities of natural and social archives that were considered in creating the historical exposome of Belval and reflects upon possibilities and limitations of the current approaches in assessing the exposome using purely a natural science approach. Issues surrounding significance, visualization, and availability of material suitable to form natural archives are discussed in a critical manner. The “Minett Stories” are presented as a way of creating new historical narratives to support exposome research. New research perspectives on the history of the Anthropocene were opened by investigating the causal relationships between factual evidence and narrative evidence stemming from historical sources. The concept of historical exposome presented here may thus offer a useful conceptual framework for studying the Anthropocene in a truly interdisciplinary fashion.","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-08-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"60831270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-05-26DOI: 10.1093/exposome/osad006
Paolo Vineis, Evangelos Handakas, Rossella Alfano, Christopher Millett, Daniela Fecht, Leda Chatzi, Michelle Plusquin, Tim Nawrot, Lorenzo Richiardi, Henrique Barros, Martine Vrijheid, Franco Sassi, Oliver Robinson
Childhood obesity is an increasingly severe public health problem, with a prospective impact on health. We propose an exposome approach to identify actionable risk factors for this condition. Our assumption is that relationships between external exposures and outcomes such as rapid growth, overweight, or obesity in children can be better understood through a "meet-in-the-middle" model. This is based on a combination of external and internal exposome-based approaches, that is, the study of multiple exposures (in our case, dietary patterns) and molecular pathways (metabolomics and epigenetics). This may strengthen causal reasoning by identifying intermediate markers that are associated with both exposures and outcomes. Our biomarker-based studies in the STOP consortium suggest (in several ways, including mediation analysis) that branched-chain amino acids (BCAAs) could be mediators of the effect of dietary risk factors on childhood overweight/obesity. This is consistent with intervention and animal studies showing that higher intake of BCAAs has a positive impact on body composition, glycemia, and satiety. Concerning food, of particular concern is the trend of increasing intake of ultra-processed food (UPF), including among children. Several mechanisms have been proposed to explain the impact of UPF on obesity and overweight, including nutrient intake (particularly proteins), changes in appetite, or the role of additives. Research from the Avon Longitudinal Study of Parents and Children cohort has shown a relationship between UPF intake and trajectories in childhood adiposity, while UPF was related to lower blood levels of BCAAs. We suggest that an exposome-based approach can help strengthening causal reasoning and support policies. Intake of UPF in children should be restricted to prevent obesity.
{"title":"The contribution to policies of an exposome-based approach to childhood obesity.","authors":"Paolo Vineis, Evangelos Handakas, Rossella Alfano, Christopher Millett, Daniela Fecht, Leda Chatzi, Michelle Plusquin, Tim Nawrot, Lorenzo Richiardi, Henrique Barros, Martine Vrijheid, Franco Sassi, Oliver Robinson","doi":"10.1093/exposome/osad006","DOIUrl":"10.1093/exposome/osad006","url":null,"abstract":"<p><p>Childhood obesity is an increasingly severe public health problem, with a prospective impact on health. We propose an exposome approach to identify actionable risk factors for this condition. Our assumption is that relationships between external exposures and outcomes such as rapid growth, overweight, or obesity in children can be better understood through a \"meet-in-the-middle\" model. This is based on a combination of external and internal exposome-based approaches, that is, the study of multiple exposures (in our case, dietary patterns) and molecular pathways (metabolomics and epigenetics). This may strengthen causal reasoning by identifying intermediate markers that are associated with both exposures and outcomes. Our biomarker-based studies in the STOP consortium suggest (in several ways, including mediation analysis) that branched-chain amino acids (BCAAs) could be mediators of the effect of dietary risk factors on childhood overweight/obesity. This is consistent with intervention and animal studies showing that higher intake of BCAAs has a positive impact on body composition, glycemia, and satiety. Concerning food, of particular concern is the trend of increasing intake of ultra-processed food (UPF), including among children. Several mechanisms have been proposed to explain the impact of UPF on obesity and overweight, including nutrient intake (particularly proteins), changes in appetite, or the role of additives. Research from the Avon Longitudinal Study of Parents and Children cohort has shown a relationship between UPF intake and trajectories in childhood adiposity, while UPF was related to lower blood levels of BCAAs. We suggest that an exposome-based approach can help strengthening causal reasoning and support policies. Intake of UPF in children should be restricted to prevent obesity.</p>","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"3 1","pages":"osad006"},"PeriodicalIF":0.0,"publicationDate":"2023-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615122/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41222064","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-04-12DOI: 10.1093/exposome/osad004
Caspar W Safarlou, Karin R Jongsma, Roel Vermeulen, Annelien L Bredenoord
In recent years, exposome research has been put forward as the next frontier for the study of human health and disease. Exposome research entails the analysis of the totality of environmental exposures and their corresponding biological responses within the human body. Increasingly, this is operationalized by big-data approaches to map the effects of internal as well as external exposures using smart sensors and multiomics technologies. However, the ethical implications of exposome research are still only rarely discussed in the literature. Therefore, we conducted a systematic review of the academic literature regarding both the exposome and underlying research fields and approaches, to map the ethical aspects that are relevant to exposome research. We identify five ethical themes that are prominent in ethics discussions: the goals of exposome research, its standards, its tools, how it relates to study participants, and the consequences of its products. Furthermore, we provide a number of general principles for how future ethics research can best make use of our comprehensive overview of the ethical aspects of exposome research. Lastly, we highlight three aspects of exposome research that are most in need of ethical reflection: the actionability of its findings, the epidemiological or clinical norms applicable to exposome research, and the meaning and action-implications of bias.
{"title":"The ethical aspects of exposome research: a systematic review.","authors":"Caspar W Safarlou, Karin R Jongsma, Roel Vermeulen, Annelien L Bredenoord","doi":"10.1093/exposome/osad004","DOIUrl":"10.1093/exposome/osad004","url":null,"abstract":"<p><p>In recent years, exposome research has been put forward as the next frontier for the study of human health and disease. Exposome research entails the analysis of the totality of environmental exposures and their corresponding biological responses within the human body. Increasingly, this is operationalized by big-data approaches to map the effects of internal as well as external exposures using smart sensors and multiomics technologies. However, the ethical implications of exposome research are still only rarely discussed in the literature. Therefore, we conducted a systematic review of the academic literature regarding both the exposome and underlying research fields and approaches, to map the ethical aspects that are relevant to exposome research. We identify five ethical themes that are prominent in ethics discussions: the goals of exposome research, its standards, its tools, how it relates to study participants, and the consequences of its products. Furthermore, we provide a number of general principles for how future ethics research can best make use of our comprehensive overview of the ethical aspects of exposome research. Lastly, we highlight three aspects of exposome research that are most in need of ethical reflection: the actionability of its findings, the epidemiological or clinical norms applicable to exposome research, and the meaning and action-implications of bias.</p>","PeriodicalId":73005,"journal":{"name":"Exposome","volume":"3 1","pages":"osad004"},"PeriodicalIF":0.0,"publicationDate":"2023-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7615114/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41160583","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}