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A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses. 评估严重急性呼吸系统综合征冠状病毒2型变异株相关突变对CD8+T细胞反应影响的系统方法。
IF 4.1 Q2 IMMUNOLOGY Pub Date : 2023-03-15 eCollection Date: 2023-01-01 DOI: 10.1093/immadv/ltad005
Paul R Buckley, Chloe H Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy

T cell recognition of SARS-CoV-2 antigens after vaccination and/or natural infection has played a central role in resolving SARS-CoV-2 infections and generating adaptive immune memory. However, the clinical impact of SARS-CoV-2-specific T cell responses is variable and the mechanisms underlying T cell interaction with target antigens are not fully understood. This is especially true given the virus' rapid evolution, which leads to new variants with immune escape capacity. In this study, we used the Omicron variant as a model organism and took a systems approach to evaluate the impact of mutations on CD8+ T cell immunogenicity. We computed an immunogenicity potential score for each SARS-CoV-2 peptide antigen from the ancestral strain and Omicron, capturing both antigen presentation and T cell recognition probabilities. By comparing ancestral vs. Omicron immunogenicity scores, we reveal a divergent and heterogeneous landscape of impact for CD8+ T cell recognition of mutated targets in Omicron variants. While T cell recognition of Omicron peptides is broadly preserved, we observed mutated peptides with deteriorated immunogenicity that may assist breakthrough infection in some individuals. We then combined our scoring scheme with an in silico mutagenesis, to characterise the position- and residue-specific theoretical mutational impact on immunogenicity. While we predict many escape trajectories from the theoretical landscape of substitutions, our study suggests that Omicron mutations in T cell epitopes did not develop under cell-mediated pressure. Our study provides a generalisable platform for fostering a deeper understanding of existing and novel variant impact on antigen-specific vaccine- and/or infection-induced T cell immunity.

接种疫苗和/或自然感染后,T细胞对严重急性呼吸系统综合征冠状病毒2型抗原的识别在解决严重急性呼吸系综合征病毒2型感染和产生适应性免疫记忆方面发挥了核心作用。然而,严重急性呼吸系统综合征冠状病毒2型特异性T细胞反应的临床影响是可变的,T细胞与靶抗原相互作用的机制尚不完全清楚。考虑到病毒的快速进化,这一点尤其正确,这会导致具有免疫逃逸能力的新变种。在这项研究中,我们使用奥密克戎变异株作为模型生物,并采用系统方法评估突变对CD8+T细胞免疫原性的影响。我们计算了来自祖先毒株和奥密克戎的每种严重急性呼吸系统综合征冠状病毒2肽抗原的免疫原性潜在评分,捕捉了抗原呈递和T细胞识别概率。通过比较祖先与奥密克戎的免疫原性评分,我们揭示了CD8+T细胞识别奥密克戎变异株中突变靶点的影响存在差异和异质性。虽然T细胞对奥密克戎肽的识别被广泛保留,但我们观察到免疫原性恶化的突变肽可能有助于某些个体的突破性感染。然后,我们将我们的评分方案与计算机诱变相结合,以表征位置和残基特异性理论突变对免疫原性的影响。虽然我们从取代的理论前景中预测了许多逃逸轨迹,但我们的研究表明,T细胞表位中的奥密克戎突变并不是在细胞介导的压力下产生的。我们的研究提供了一个通用的平台,有助于更深入地了解现有和新的变体对抗原特异性疫苗和/或感染诱导的T细胞免疫的影响。
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引用次数: 0
Stratification of PD-1 blockade response in melanoma using pre- and post-treatment immunophenotyping of peripheral blood. 利用外周血治疗前后的免疫分型对黑色素瘤的 PD-1 阻断反应进行分层。
IF 4.1 Q2 IMMUNOLOGY Pub Date : 2023-01-06 eCollection Date: 2023-01-01 DOI: 10.1093/immadv/ltad001
Natalie M Edner, Elisavet Ntavli, Lina Petersone, Chun Jing Wang, Astrid Fabri, Alexandros Kogimtzis, Vitalijs Ovcinnikovs, Ellen M Ross, Frank Heuts, Yassin Elfaki, Luke P Houghton, Toby Talbot, Amna Sheri, Alexandra Pender, David Chao, Lucy S K Walker

Efficacy of checkpoint inhibitor therapies in cancer varies greatly, with some patients showing complete responses while others do not respond and experience progressive disease. We aimed to identify correlates of response and progression following PD-1-directed therapy by immunophenotyping peripheral blood samples from 20 patients with advanced malignant melanoma before and after treatment with the PD-1 blocking antibody pembrolizumab. Our data reveal that individuals responding to PD-1 blockade were characterised by increased CD8 T cell proliferation following treatment, while progression was associated with an increase in CTLA-4-expressing Treg. Remarkably, unsupervised clustering analysis of pre-treatment T cell subsets revealed differences in individuals that went on to respond to PD-1 blockade compared to individuals that did not. These differences mapped to expression of the proliferation marker Ki67 and the costimulatory receptor CD28 as well as the inhibitory molecules 2B4 and KLRG1. While these results require validation in larger patient cohorts, they suggest that flow cytometric analysis of a relatively small number of T cell markers in peripheral blood could potentially allow stratification of PD-1 blockade treatment response prior to therapy initiation.

检查点抑制剂疗法在癌症中的疗效差异很大,一些患者表现出完全应答,而另一些患者则没有应答,病情出现进展。我们的目的是通过对 20 名晚期恶性黑色素瘤患者在使用 PD-1 阻断抗体 pembrolizumab 治疗前后的外周血样本进行免疫分型,确定 PD-1 导向疗法反应和进展的相关因素。我们的数据显示,对 PD-1 阻断剂有反应的患者在治疗后 CD8 T 细胞增殖增加,而病情进展与表达 CTLA-4 的 Treg 增加有关。值得注意的是,对治疗前T细胞亚群的无监督聚类分析显示,对PD-1阻断疗法有反应的个体与没有反应的个体之间存在差异。这些差异与增殖标记物 Ki67、共价受体 CD28 以及抑制分子 2B4 和 KLRG1 的表达有关。虽然这些结果需要在更大的患者群体中进行验证,但它们表明,对外周血中相对较少的T细胞标记物进行流式细胞分析,有可能在开始治疗前对PD-1阻断治疗反应进行分层。
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引用次数: 0
Peripheral blood persistence and expansion of transferred non-genetically modified Natural Killer cells might not be necessary for clinical activity. 转移的非转基因自然杀伤细胞的外周血持续和扩增可能不是临床活动所必需的。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltac024
Lucia Silla

Natural killer (NK) cells are innate lymphocytes that react without previous exposition to virus infected or malignant cells and stimulate adaptive immune response to build a long-lasting immunity against it. To that end, tissue resident NK cells are predominantly regulatory as opposed to cytotoxic. In the hematopoietic stem cell transplant (HSCT) setting, which curative potential relies on the graft versus leukemia effect, NK cells are known to play a significant role. This knowledge has paved the way to the active investigation on its anti-tumor effect outside the stem cell transplant scenario. Based on the relevant literature on the adoptive transfer of non-genetically modified NK cells for the treatment of relapsed/refractory acute leukemia and on our own experience, we discuss the role of donor cell peripheral blood persistence and expansion and its lack of correlation with anti-leukemia activity.

自然杀伤细胞(NK)是一种先天淋巴细胞,它在没有事先暴露于病毒感染或恶性细胞的情况下产生反应,并刺激适应性免疫反应,以建立持久的免疫力。为此,组织常驻NK细胞主要是调节性的,而不是细胞毒性的。在造血干细胞移植(HSCT)中,其治疗潜力依赖于移植物对抗白血病的效果,已知NK细胞起着重要作用。这一发现为在干细胞移植场景之外积极研究其抗肿瘤作用铺平了道路。基于非转基因NK细胞过继移植治疗复发/难治性急性白血病的相关文献和我们自己的经验,我们讨论了供体细胞外周血持续性和扩增的作用及其与抗白血病活性缺乏相关性。
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引用次数: 0
Lytic efficiency of immunosuppressive drug-resistant armoured T cells against circulating HBV-related HCC in whole blood. 免疫抑制耐药装甲T细胞对循环hbv相关HCC的全血溶解效率。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltad015
Meiyin Lin, Sebastian Chakrit Bhakdi, Damien Tan, Joycelyn Jie Xin Lee, David Wai Meng Tai, Andrea Pavesi, Lu-En Wai, Tina Wang, Antonio Bertoletti, Anthony Tanoto Tan

Recurrence of hepatitis B virus-related hepatocellular carcinoma (HBV-HCC) after liver transplant (LT) is mediated by circulating tumour cells (CTCs) and exacerbated by the immunosuppressants required to prevent graft rejection. To circumvent the effects of immunosuppressants, we developed immunosuppressive drug-resistant armoured HBV-specific T-cell receptor-redirected T cells (IDRA HBV-TCR). However, their ability to eliminate HBV-HCC circulating in the whole blood has never been tested, and whether their lytic efficacy is compatible with the number of adoptively transferred T cells in vivo has never been measured. Hence, we developed a microscopy-based assay to quantify CTCs in whole blood. The assay was then used to quantify the efficacy of IDRA HBV-TCRs to lyse free-floating HBV-HCC cells in the presence of Tacrolimus and Mycophenolate Mofetil (MMF). We demonstrated that a panel of antibodies (AFP, GPC3, Vimentin, pan-Cytokeratin, and CD45) specific for HCC tumour antigens and immune cells can effectively differentiate HCC-CTCs in whole blood. Through dose-titration experiments, we observed that in the presence of immunosuppressive drugs, a minimum of 20 000 IDRA HBV-TCR T cells/ml of whole blood is necessary to lyse ~63.5% of free-floating HBV-HCC cells within 16 hours. In conclusion, IDRA HBV-TCR T cells can lyse free-floating HBV-HCC cells in whole blood in the presence of Tacrolimus and MMF. The quantity of IDRA-HBV TCR T cells required can be achieved by the adoptive transfer of 5 × 106 IDRA-HBV TCR-T cells/kg, supporting the utilisation of IDRA HBV-TCR T cells to eliminate CTCs as prophylaxis against recurrence after LT.

肝移植(LT)后乙肝病毒相关肝细胞癌(HBV-HCC)的复发是由循环肿瘤细胞(ctc)介导的,并因预防移植排斥所需的免疫抑制剂而加剧。为了规避免疫抑制剂的影响,我们开发了免疫抑制性耐药装甲hbv特异性T细胞受体重定向T细胞(IDRA HBV-TCR)。然而,它们消除在全血中循环的HBV-HCC的能力从未被测试过,它们的溶解功效是否与体内过继转移的T细胞数量相容也从未被测量过。因此,我们开发了一种基于显微镜的方法来定量全血中的ctc。然后,该试验用于量化IDRA hbv - tcr在他克莫司和霉酚酸酯(MMF)存在下裂解自由漂浮的HBV-HCC细胞的功效。我们证明了一组针对HCC肿瘤抗原和免疫细胞的抗体(AFP、GPC3、Vimentin、泛细胞角蛋白和CD45)可以有效地在全血中分化HCC- ctcs。通过剂量滴定实验,我们观察到在免疫抑制药物存在的情况下,至少需要20000 IDRA HBV-TCR T细胞/ml的全血才能在16小时内溶解~63.5%的自由漂浮的HBV-HCC细胞。总之,在他克莫司和MMF存在下,IDRA HBV-TCR T细胞可以溶解全血中自由漂浮的HBV-HCC细胞。IDRA- hbv TCR T细胞的数量可以通过5 × 106 IDRA- hbv TCR-T细胞/kg的过继转移来实现,支持利用IDRA HBV-TCR T细胞消除ctc,以预防LT后复发。
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引用次数: 0
Treg-based immunotherapy for antigen-specific immune suppression and stable tolerance induction: a perspective. 基于treg的免疫疗法对抗原特异性免疫抑制和稳定耐受诱导的研究进展
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltad007
Shimon Sakaguchi, Ryoji Kawakami, Norihisa Mikami

FoxP3-expressing regulatory T cells (Tregs), whether naturally generated in the immune system or unnaturally induced from conventional T cells (Tconvs) in the laboratory, have much therapeutic value in treating immunological diseases and establishing transplantation tolerance. Natural Tregs (nTregs) can be selectively expanded in vivo by administration of low-dose IL-2 or IL-2 muteins for immune suppression. For adoptive Treg cell therapy, nTregs can be expanded in vitro by strong antigenic stimulation in the presence of IL-2. Synthetic receptors such as CAR can be expressed in nTregs to equip them with a particular target specificity for suppression. In addition, antigen-specific Tconvs can be converted in vitro to functionally stable Treg-like cells by a combination of antigenic stimulation, FoxP3 induction, and establishment of the Treg-type epigenome. This review discusses current and prospective strategies for Treg-based immune suppression and the issues to be resolved for achieving stable antigen-specific immune suppression and tolerance induction in the clinic by targeting Tregs.

表达foxp3的调节性T细胞(Tregs),无论是在免疫系统中自然产生的,还是在实验室中由常规T细胞(Tconvs)非自然诱导的,在治疗免疫性疾病和建立移植耐受方面都具有很大的治疗价值。天然Tregs (nTregs)可以通过低剂量的IL-2或IL-2突变蛋白在体内选择性扩增来抑制免疫。对于过继性Treg细胞治疗,在IL-2存在的情况下,ntreg可以通过强抗原刺激在体外扩增。合成受体如CAR可以在ntreg中表达,使它们具有特定的抑制靶标特异性。此外,抗原特异性Tconvs可以通过抗原刺激、FoxP3诱导和treg型表观基因组的建立相结合,在体外转化为功能稳定的treg样细胞。本文综述了目前和未来基于treg的免疫抑制策略,以及在临床上通过靶向treg实现稳定的抗原特异性免疫抑制和耐受诱导需要解决的问题。
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引用次数: 0
TIGIT-based immunotherapeutics in lung cancer. 基于tigit的肺癌免疫治疗。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltad009
Akshay J Patel, Gary W Middleton

In this review, we explore the biology of the TIGIT checkpoint and its potential as a therapeutic target in lung cancer. We briefly review a highly selected set of clinical trials that have reported or are currently recruiting in non-small cell and small cell lung cancer, a disease transformed by the advent of PD-1/PD-L1 checkpoint blockade immunotherapy. We explore the murine data underlying TIGIT blockade and further explore the reliance of effective anti-TIGIT therapy on DNAM-1(CD226)-positive activated effector CD8+ T cells. The synergism with anti-PD-1 therapy is also explored. Future directions in the realm of overcoming resistance to checkpoint blockade and extending the repertoire of other checkpoints are also briefly explored.

在这篇综述中,我们探讨了TIGIT检查点的生物学特性及其作为肺癌治疗靶点的潜力。我们简要回顾了一组经过精心挑选的临床试验,这些试验已经报道或正在招募非小细胞和小细胞肺癌患者,PD-1/PD-L1检查点阻断免疫疗法的出现改变了这种疾病。我们探索了TIGIT阻断的小鼠数据,并进一步探索了有效的抗TIGIT治疗对DNAM-1(CD226)阳性激活效应CD8+ T细胞的依赖。还探讨了与抗pd -1治疗的协同作用。还简要探讨了克服对检查点封锁的抵抗和扩展其他检查点的曲目领域的未来方向。
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引用次数: 0
Correction to: Characterization of sabatolimab, a novel immunotherapy with immuno-myeloid activity directed against TIM-3 receptor. 更正:sabatolimab的特性,一种针对TIM-3受体具有免疫髓系活性的新型免疫疗法。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltad002

[This corrects the article DOI: 10.1093/immadv/ltac019.].

[这更正了文章DOI: 10.1093/immadv/ltac019.]。
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引用次数: 0
Correction to: Advancement of antigen-specific immunotherapy: knowledge transfer between allergy and autoimmunity. 抗原特异性免疫治疗的进展:过敏和自身免疫之间的知识转移。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltad004
[This corrects the article DOI: 10.1093/immadv/ltab009.].
[这更正了文章DOI: 10.1093/immadv/ltab009.]。
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引用次数: 0
A recombinant Der p 1-specific allergen-toxin demonstrates superior killing of allergen-reactive IgG+ hybridomas in comparison to its recombinant allergen-drug conjugate. 与重组的过敏原-药物偶联物相比,重组的Der 1特异性过敏原毒素对过敏原反应性IgG+杂交瘤的杀伤能力更强。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltac023
A K Daramola, O A Akinrinmade, E A Fajemisin, K Naran, N Mthembu, S Hadebe, F Brombacher, A M Huysamen, O E Fadeyi, R Hunter, S Barth

Introduction: Current treatments for asthma help to alleviate clinical symptoms but do not cure the disease. In this study, we explored a novel therapeutic approach for the treatment of house dust mite allergen Der p 1induced asthma by aiming to eliminate specific population of B-cells involved in memory IgE response to Der p 1.

Materials and methods: To achieve this aim, we developed and evaluated two different proDer p 1-based fusion proteins; an allergen-toxin (proDer p 1-ETA) and an allergen-drug conjugate (ADC) (proDer p 1-SNAP-AURIF) against Der p 1 reactive hybridomas as an in vitro model for Der p 1 reactive human B-cells. The strategy involved the use of proDer p 1 allergen as a cell-specific ligand to selectively deliver the bacterial protein toxin Pseudomonas exotoxin A (ETA) or the synthetic small molecule toxin Auristatin F (AURIF) into the cytosol of Der p 1 reactive cells for highly efficient cell killing.

Results: As such, we demonstrated recombinant proDer p 1 fusion proteins were selectively bound by Der p 1 reactive hybridomas as well as primary IgG1+ B-cells from HDM-sensitized mice. The therapeutic potential of proDer p 1-ETA' and proDer p 1-SNAP-AURIF was confirmed by their selective cytotoxic activities on Der p 1 reactive hybridoma cells. The allergen-toxin demonstrated superior cytotoxic activity, with IC50 values in the single digit nanomolar value, compared to the ADC.

Discussions: Altogether, the proof-of-concept experiments in this study provide a promising approach for the treatment of patients with house dust mite-driven allergic asthma.

目前的治疗哮喘有助于缓解临床症状,但不能治愈疾病。在这项研究中,我们探索了一种新的治疗方法来治疗尘螨过敏原Der p1诱导的哮喘,旨在消除参与Der p1记忆IgE反应的特定b细胞群。材料和方法:为了实现这一目标,我们开发并评估了两种不同的基于proDer p1的融合蛋白;一种过敏原毒素(proDer p1 - eta)和一种过敏原药物偶联物(ADC) (proDer p1 - snap - aurif)抗Der p1反应性杂杂瘤作为Der p1反应性人b细胞的体外模型。该策略包括使用proDer p1过敏原作为细胞特异性配体,选择性地将细菌蛋白毒素假单胞菌外毒素a (ETA)或合成小分子毒素Auristatin F (AURIF)递送到Der p1反应细胞的细胞质中,以实现高效的细胞杀伤。结果:因此,我们证明重组proDer p1融合蛋白可以选择性地与hdm致敏小鼠的Der p1反应性杂交瘤和原代IgG1+ b细胞结合。proDer p1 - eta '和proDer p1 - snap - aurif对Der p1反应性杂杂瘤细胞的选择性细胞毒活性证实了它们的治疗潜力。与ADC相比,过敏原毒素显示出优越的细胞毒活性,IC50值为个位数纳摩尔值。讨论:总之,本研究的概念验证实验为屋尘螨驱动的过敏性哮喘患者的治疗提供了一种有希望的方法。
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引用次数: 0
A historical perspective on HLA. HLA的历史观点。
Q2 IMMUNOLOGY Pub Date : 2023-01-01 DOI: 10.1093/immadv/ltad014
Walter Bodmer

The discovery of the history of the HLA system is reviewed from the earliest attempts at cancer transfers between mice, through the discovery of the mouse H-2 system on mouse red blood cells, the discovery of HLA class II and II antigens by use of sera from multiparous women, to the resolution of the HLA and H-2 functions explained by the attachment of intra cellular peptides to the HLA antigen grooves on the cell surface. The study of the associations between HLA types and diseases forms the basis for the subsequent extensive study of the genetics of human complex disease and phenotypes by GWAS (Genome Wide Association Studies).

本文回顾了HLA系统的发现历史,从最早的癌症在小鼠之间转移的尝试,通过小鼠红细胞上小鼠H-2系统的发现,通过使用多胎妇女的血清发现HLA II类和II类抗原,到细胞内肽附着在细胞表面HLA抗原凹槽上解释HLA和H-2功能的解决。HLA类型与疾病之间关联的研究为GWAS(全基因组关联研究)随后对人类复杂疾病和表型遗传学的广泛研究奠定了基础。
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引用次数: 0
期刊
Immunotherapy advances
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