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An early screening model of pulse detection technology for hepatic steatosis 脉冲检测技术在肝脂肪变性筛查模型中的应用
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-11-01 DOI: 10.1016/j.imed.2023.03.002
Wenjie Wu , Chunke Zhang , Xiaotian Ma , Rui Guo , Jianjun Yan , Yiqin Wang , Haixia Yan , Yeqing Zhang
<div><h3>Background</h3><p>The increasing prevalence of hepatic steatosis presents a considerable challenge to public health. There is a critical need for the development of novel preventive and screening strategies for this condition. This study evaluated the potential applications of wrist pulse detection technology for the early detection of liver diseases. The pulse time-domain features of a medical exam population with and without hepatic steatosis were assessed to develop a screening model for this disease.</p></div><div><h3>Methods</h3><p>Participants were consecutively recruited from March 2021 to March 2022 in the medical examination centers of the Yueyang Hospital of Integrated Traditional Chinese and Western Medicine and the Shanghai Municipal Hospital of Traditional Chinese Medicine. Clinical data from 255 participants, including general information (sex, age, and body mass index), and data related to glucose and blood lipids (fasting plasma glucose, triglyceride, total cholesterol, high-density lipoprotein, and low-density lipoprotein levels) were collected. Wrist pulse signals were acquired using a pulse detection device, and the pulse time-domain features, including <em>t<sub>1</sub>, t<sub>4</sub>, t<sub>5</sub></em>, T, <em>w<sub>1</sub>, w<sub>2</sub>, h<sub>2</sub></em>/<em>h</em><sub>1</sub>, <em>h<sub>3</sub></em>/<em>h</em><sub>1</sub>, and <em>h<sub>5</sub></em>/<em>h</em><sub>1</sub> were extracted. Participants were assigned to hepatic steatosis and non-hepatic steatosis groups according to their abdominal ultrasound examination results. Their clinical data and pulse time-domain features were compared using chi-square and parametric or non-parametric statistical methods. Three datasets were used to construct screening models for hepatic steatosis based on the random forest algorithm. The datasets for modeling were defined as Dataset 1, containing blood glucose and lipid data and general information; Dataset 2, containing time-domain features and general information; Dataset 3, containing time-domain features, blood glucose and lipid data, and general information. The evaluation metrics, accuracy, precision, recall, F1-score, and areas under the receiver operating characteristic curve (AUC) were compared for each model.</p></div><div><h3>Results</h3><p>The time-domain features of the two groups differed significantly. The <em>t<sub>1</sub>, t<sub>4</sub>, t<sub>5</sub></em>, T, <em>h<sub>2</sub></em>/<em>h<sub>1</sub>, h<sub>3</sub></em>/<em>h<sub>1</sub>, w<sub>1,</sub></em> and <em>w<sub>2</sub></em> features were higher in the hepatic steatosis group than in the non-hepatic steatosis group (<em>P</em> < 0.05), while the <em>h<sub>5</sub></em>/<em>h<sub>1</sub></em> features were lower in the hepatic steatosis group than in the non-hepatic steatosis group (<em>P</em> < 0.05). The screening models for hepatic steatosis based on both time-domain features and blood glucose and lipid data outperformed those based on ti
背景肝脂肪变性的发病率不断上升,给公共卫生带来了巨大挑战。目前亟需针对这一病症开发新的预防和筛查策略。本研究评估了手腕脉搏检测技术在肝病早期检测中的潜在应用。方法2021年3月至2022年3月期间,在岳阳市中西医结合医院和上海市中医院的体检中心连续招募了255名参与者。收集了 255 名参与者的临床数据,包括一般信息(性别、年龄和体重指数)以及血糖和血脂相关数据(空腹血浆葡萄糖、甘油三酯、总胆固醇、高密度脂蛋白和低密度脂蛋白水平)。使用脉搏检测装置采集手腕脉搏信号,提取脉搏时域特征,包括 t1、t4、t5、T、w1、w2、h2/h1、h3/h1 和 h5/h1。根据腹部超声检查结果,将参与者分为肝脂肪变性组和非肝脂肪变性组。采用卡方、参数或非参数统计方法对他们的临床数据和脉搏时域特征进行比较。根据随机森林算法,使用三个数据集构建肝脂肪变性筛查模型。用于建模的数据集定义为:数据集 1,包含血糖和血脂数据以及一般信息;数据集 2,包含时域特征和一般信息;数据集 3,包含时域特征、血糖和血脂数据以及一般信息。比较了每个模型的准确度、精确度、召回率、F1-分数和接收者工作特征曲线下面积(AUC)等评价指标。肝脂肪变性组的 t1、t4、t5、T、h2/h1、h3/h1、w1 和 w2 特征高于非肝脂肪变性组(P < 0.05),而肝脂肪变性组的 h5/h1 特征低于非肝脂肪变性组(P < 0.05)。基于时域特征及血糖和血脂数据的肝脂肪变性筛查模型优于仅基于时域特征或血液标记物的筛查模型。组合模型的准确度、精确度、召回率、F1-分数和AUC分别为81.18%、80.56%、76.32%、79%和87.79%。这些比例比单独基于时域特征的模型分别高出 1.57%、1.86%、1.76%、2% 和 3.54%,比单独基于血糖和血脂的模型分别高出 3.14%、4.2%、2.64%、4% 和 6.47%。研究结果表明,脉搏检测技术可用于开发移动医疗设备或远程家庭监测系统,以检测肝炎脂肪变性。
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引用次数: 0
Recommendation on data collection and annotation of ocular appearance images in ptosis 上睑下垂患者眼部外观影像资料收集及注释的建议
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-11-01 DOI: 10.1016/j.imed.2022.08.003
Jie Meng , Binying Lin , Dongmei Li , Shiqi Hui , Xuanwei Liang , Xianchai Lin , Zhen Mao , Xingyi Li , Zuohong Li , Rongxin Chen , Yahan Yang , Ruiyang Li , Anqi Yan , Haotian Lin , Danping Huang , Chinese Association of Artificial Intelligence; Medical Artificial Intelligence Branch of Guangdong Medical Association

Ptosis is a common ophthalmologic condition, and the diagnosis is primarily based on ocular appearance. The diagnosis of such conditions can be improved using emerging technology such as artificial intelligence-based methods. However, unified data collection and labeling standards have not yet been established. This directly impacts the accuracy of ptosis diagnosis based on appearance alone. Therefore, in the present study, we aimed to establish a procedure to obtain and label images to devise a recommendation system for optimal recognition of ptosis based on ocular appearances. This would help to standardize and facilitate data sharing and serve as a guideline for the development and improvisation of algorithms in artificial intelligence for ptosis.

上睑下垂是一种常见的眼科疾病,诊断主要依据眼部外观。利用新兴技术(如基于人工智能的方法)可以改善此类疾病的诊断。然而,统一的数据收集和标记标准尚未建立。这直接影响了仅根据外观诊断上睑下垂的准确性。因此,在本研究中,我们旨在建立一套获取和标记图像的程序,从而设计出一套基于眼部外观的上睑下垂最佳识别推荐系统。这将有助于规范和促进数据共享,并为上睑下垂人工智能算法的开发和改进提供指导。
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引用次数: 0
State-of-the-art machine learning techniques for melanoma skin cancer detection and classification: a comprehensive review 最先进的机器学习技术用于黑色素瘤皮肤癌的检测和分类:全面回顾
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2022.08.004
Harsh Bhatt , Vrunda Shah , Krish Shah , Ruju Shah , Manan Shah

Skin cancer is among the most common and lethal cancer types, with the number of cases increasing dramatically worldwide. If not diagnosed in the nascent stages, it can lead to metastases, resulting in high mortality rates. Skin cancer can be cured if detected early. Consequently, timely and accurate diagnosis of such cancers is currently a key research objective. Various machine learning technologies have been employed in computer-aided diagnosis of skin cancer detection and malignancy classification. Machine learning is a subfield of artificial intelligence (AI) involving models and algorithms which can learn from data and generate predictions on previously unseen data. The traditional biopsy method is applied to diagnose skin cancer, which is a tedious and expensive procedure. Alternatively, machine learning algorithms for cancer diagnosis can aid in its early detection, lowering the workload of specialists while simultaneously enhancing skin lesion diagnostics. This article presented a critical review of select state-of-the-art machine learning techniques used to detect skin cancer. Several studies had been collected, and an analysis of the performance of k-nearest neighbors, support vector machine, and convolutional neural networks algorithms on benchmark datasets was conducted. The shortcomings and disadvantages of each algorithm were briefly discussed. Challenges in detecting skin cancer were highlighted and the scope for future research was proposed.

皮肤癌症是最常见和致命的癌症类型之一,全球病例数量急剧增加。如果在新生阶段没有得到诊断,可能会导致转移,导致高死亡率。如果及早发现皮肤癌症是可以治愈的。因此,及时准确地诊断此类癌症是目前的一个关键研究目标。各种机器学习技术已被用于皮肤癌症检测和恶性肿瘤分类的计算机辅助诊断。机器学习是人工智能的一个子领域,涉及模型和算法,它们可以从数据中学习并对以前看不见的数据进行预测。传统的活组织检查方法应用于皮肤癌症的诊断,是一个繁琐而昂贵的过程。或者,用于癌症诊断的机器学习算法可以帮助其早期检测,降低专家的工作量,同时增强皮肤病变诊断。本文对用于检测皮肤癌症的最先进的机器学习技术进行了批判性的回顾。已经收集了几项研究,并对k近邻、支持向量机和卷积神经网络算法在基准数据集上的性能进行了分析。简要讨论了每种算法的缺点和不足。强调了检测皮肤癌症的挑战,并提出了未来研究的范围。
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引用次数: 11
An evolutionary ensemble learning for diagnosing COVID-19 via cough signals 通过咳嗽信号诊断新冠肺炎的进化集成学习
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2023.01.001
Mohammad Hassan Tayarani Najaran

Objective The spread of the COVID-19 disease has caused great concern around the world and detecting the positive cases is crucial in curbing the pandemic. One of the symptoms of the disease is the dry cough it causes. It has previously been shown that cough signals can be used to identify a variety of diseases including tuberculosis, asthma, etc. In this paper, we proposed an algorithm to diagnose the COVID-19 disease via cough signals.Methods The proposed algorithm was an ensemble scheme that consists of a number of base learners, where each base learner used a different feature extractor method, including statistical approaches and convolutional neural networks (CNNs) for automatic feature extraction. Features were extracted from the raw signal and some transforms performed it, including Fourier, wavelet, Hilbert-Huang, and short-term Fourier transforms. The outputs of these base-learners were aggregated via a weighted voting scheme, with the weights optimised via an evolutionary paradigm. This paper also proposed a memetic algorithm for training the CNNs in the base-learners, which combined the speed of gradient descent (GD) algorithms and global search space coverage of the evolutionary algorithms.Results Experiments were performed on the proposed algorithm and different rival algorithms which included a number of CNN architectures in the literature and generic machine learning algorithms. The results suggested that the proposed algorithm achieves better performance compared to the existing algorithms in diagnosing COVID-19 via cough signals. Conclusion COVID-19 may be diagnosed via cough signals and CNNs may be employed to process these signals and it may be further improved by the optimization of CNN architecture.

目的新冠肺炎疫情的蔓延已引起世界各国的高度关注,发现阳性病例是遏制疫情的关键。这种疾病的症状之一是它引起的干咳。先前已经表明,咳嗽信号可以用于识别包括结核病、哮喘等在内的多种疾病。在本文中,我们提出了一种通过咳嗽信号诊断新冠肺炎疾病的算法。方法所提出的算法是一种由多个基础学习器组成的集成方案,其中每个基础学习器使用不同的特征提取方法,包括用于自动特征提取的统计方法和卷积神经网络(CNNs)。从原始信号中提取特征,并进行一些变换,包括傅立叶变换、小波变换、Hilbert-Huang变换和短期傅立叶变换。这些基础学习者的输出通过加权投票方案进行聚合,权重通过进化范式进行优化。本文还提出了一种在基础学习器中训练细胞神经网络的模因算法,该算法结合了梯度下降速度(GD)算法和进化算法的全局搜索空间覆盖率。结果对所提出的算法和不同的竞争算法进行了实验,其中包括文献中的许多CNN架构和通用机器学习算法。结果表明,与现有算法相比,该算法在通过咳嗽信号诊断新冠肺炎方面取得了更好的性能。结论新冠肺炎可通过咳嗽信号进行诊断,CNN可用于处理这些信号,并可通过优化CNN结构来进一步改善。
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引用次数: 0
The standardized design and application guidelines: A primary-oriented artificial intelligence screening system of the lesion sign in the macular region based on fundus color photography 标准化设计与应用指南:基于眼底彩色摄影的黄斑病变征象初级人工智能筛查系统
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2023.05.001
Ocular Fundus Diseases Group of Chinese Ophthalmological Society; Expert Group for Artificial Intelligence Research, Development, and Application

With the popularity and development of artificial intelligence (AI), disease screening systems based on AI algorithms are gradually emerging in the medical field. Such systems can be used for primary screening of diseases to relieve the pressure on primary health care. In recent years, AI algorithms have demonstrated good performance in the analysis and identification of lesion signs in the macular region of fundus color photography, and a screening system for fundus lesion signs applicable to primary screening is bound to emerge in the future. Therefore, to standardize the design and clinical application of macular region lesion sign screening systems based on AI algorithms, the Ocular Fundus Diseases Group of Chinese Ophthalmological Society, in collaboration with relevant experts, developed this guideline after investigating issues, discussing production evidence, and holding guideline workshops. It aimed to establish uniform standards for the definition of the macular region and lesion signs, AI adoption scenarios, algorithm model construction, dataset establishment and labeling, architecture and function design, and image data acquisition for the screening system to guide the implementation of the screening work.

随着人工智能的普及和发展,基于人工智能算法的疾病筛查系统正在医学领域逐渐兴起。这种系统可用于疾病的初级筛查,以减轻初级卫生保健的压力。近年来,人工智能算法在眼底彩色摄影黄斑区病变征象的分析和识别方面表现出了良好的性能,未来势必会出现一种适用于初筛的眼底病变征象筛查系统。因此,为了规范基于人工智能算法的黄斑区病变体征筛查系统的设计和临床应用,中国眼科学会眼底病学组与相关专家合作,在调查问题、讨论生产证据和举办指南研讨会后,制定了本指南。旨在为筛查系统的黄斑区域和病变体征的定义、人工智能采用场景、算法模型构建、数据集建立和标记、架构和功能设计以及图像数据采集建立统一的标准,以指导筛查工作的实施。
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引用次数: 1
Tuberculosis screening among children and adolescents in China: insights from a mathematical model 中国儿童和青少年结核病筛查:来自数学模型的见解
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2022.09.001
Janne Estill , Yangqin Xun , Shouyuan Wu , Lidong Hu , Nan Yang , Shu Yang , Yaolong Chen , Guobao Li

Background

Tuberculosis (TB) continues to be prevalent in China also among children and adolescents in China. We built a dynamic mathematical model for TB transmission in China, and applied it to compare the epidemic trends 2021–2030 under a range of screening interventions focusing on children and adolescents.

Methods

We developed a dynamic mathematical model with a flexible structure. The model can be applied either stochastically or deterministically, and can encompass arbitrary age structure and resistance levels. In the present version, we used the deterministic version excluding resistance but including age structure with six groups: 0–5, 6–11, 12–14, 15–17, 18–64, and 65 years and above. We parameterized the model by literature data and fitting it to case and death estimates provided by the World Health Organization. We compared the new TB cases and TB-related deaths in each age group over the period 2021–2030 in 10 scenarios that involved intensified screening of particular age groups of children, adolescents, or young adults, or decreased or increased diagnostic accuracy of the screening.

Results

Screening the entire age class of 18-year-old persons would prevent 517,000 TB cases and 14,600 TB-related deaths between years 2021 and 2030, corresponding to 6.6% and 5.5% decrease from the standard of care projection, respectively. Annual screening of children aged 6–11 and, to a lesser extent, 0–5 years, also reduced TB incidence and mortality, particularly among children of the respective ages but also in other age groups. In contrast, intensified screening of adolescents did not have a major impact. Screening with a simpler and less accurate method resulted in worsened outcomes, which could not be offset by more intensive screening. More accurate screening and better sensitivity to detect latent TB could prevent 2.3 million TB cases and 68,500 TB deaths in the coming 10 years.

Conclusion

Routine screening in schools can efficiently reduce the burden of TB in China. Screening should be intensified particularly among children in primary school age.

背景肺结核在中国继续流行,在中国的儿童和青少年中也是如此。我们建立了中国结核病传播的动态数学模型,并将其应用于比较2021-2030年以儿童和青少年为重点的一系列筛查干预措施下的疫情趋势。方法建立一个具有柔性结构的动态数学模型。该模型可以随机应用,也可以确定应用,并且可以包含任意的年龄结构和阻力水平。在目前的版本中,我们使用了确定性版本,不包括耐药性,但包括六组的年龄结构:0-5岁、6-11岁、12-14岁、15-17岁、18-64岁和65岁及以上。我们通过文献数据对模型进行了参数化,并将其与世界卫生组织提供的病例和死亡估计值进行了拟合。我们比较了2021年至2030年期间每个年龄组的新结核病病例和结核病相关死亡,共有10种情况,包括加强对儿童、青少年或年轻人特定年龄组的筛查,或降低或提高筛查的诊断准确性。结果在2021年至2030年期间,对18岁的整个年龄段人群进行筛查将预防517000例结核病病例和14600例结核病相关死亡,分别比护理标准预测下降6.6%和5.5%。每年对6-11岁儿童,以及在较小程度上对0-5岁儿童进行筛查,也降低了结核病的发病率和死亡率,特别是在相应年龄段的儿童中,但在其他年龄组中也是如此。相比之下,加强对青少年的筛查并没有产生重大影响。用更简单、更不准确的方法进行筛查会导致结果恶化,而更深入的筛查无法抵消这一点。在未来10年内,更准确的筛查和更好的敏感性可以预防230万结核病病例和6.85万结核病死亡。结论学校常规筛查能有效减轻我国结核病负担。应加强筛查,尤其是在小学年龄的儿童中。
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引用次数: 1
Automated assessment of transthoracic echocardiogram image quality using deep neural networks 利用深度神经网络自动评估经胸超声心动图图像质量
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2022.08.001
Robert B. Labs , Apostolos Vrettos , Jonathan Loo , Massoud Zolgharni

Background

Standard views in two-dimensional echocardiography are well established but the qualities of acquired images are highly dependent on operator skills and are assessed subjectively. This study was aimed at providing an objective assessment pipeline for echocardiogram image quality by defining a new set of domain-specific quality indicators. Consequently, image quality assessment can thus be automated to enhance clinical measurements, interpretation, and real-time optimization.

Methods

We developed deep neural networks for the automated assessment of echocardiographic frames that were randomly sampled from 11,262 adult patients. The private echocardiography dataset consists of 33,784 frames, previously acquired between 2010 and 2020. Unlike non-medical images where full-reference metrics can be applied for image quality, echocardiogram's data are highly heterogeneous and requires blind-reference (IQA) metrics. Therefore, deep learning approaches were used to extract the spatiotemporal features and the image's quality indicators were evaluated against the mean absolute error. Our quality indicators encapsulate both anatomical and pathological elements to provide multivariate assessment scores for anatomical visibility, clarity, depth-gain and foreshortedness.

Results

The model performance accuracy yielded 94.4%, 96.8%, 96.2%, 97.4% for anatomical visibility, clarity, depth-gain and foreshortedness, respectively. The mean model error of 0.375±0.0052 with computational speed of 2.52 ms per frame (real-time performance) was achieved.

Conclusion

The novel approach offers new insight to the objective assessment of transthoracic echocardiogram image quality and clinical quantification in A4C and PLAX views. It also lays stronger foundations for the operator's guidance system which can leverage the learning curve for the acquisition of optimum quality images during the transthoracic examination.

背景二维超声心动图的标准视图已经建立,但采集图像的质量高度依赖于操作员的技能,并且是主观评估的。本研究旨在通过定义一组新的领域特定质量指标,为超声心动图图像质量提供一个客观的评估管道。因此,图像质量评估可以自动化,以增强临床测量、解释和实时优化。方法我们开发了深度神经网络,用于自动评估从11262名成年患者中随机抽取的超声心动图框架。私人超声心动图数据集由33784帧组成,之前在2010年至2020年间采集。与非医学图像不同,超声心动图的数据具有高度异质性,需要盲参考(IQA)指标。因此,使用深度学习方法提取时空特征,并根据平均绝对误差评估图像的质量指标。我们的质量指标涵盖了解剖和病理元素,为解剖可见性、清晰度、深度增益和缩短提供了多变量评估分数。结果模型在解剖可见度、清晰度、深度增益和缩短方面的准确率分别为94.4%、96.8%、96.2%和97.4%。平均模型误差为0.375±0.0052,计算速度为每帧2.52ms(实时性能)。结论该新方法为A4C和PLAX视图下经胸超声心动图图像质量和临床定量的客观评估提供了新的见解。它还为操作员的指导系统奠定了更坚实的基础,该系统可以利用学习曲线在经胸检查期间获取最佳质量的图像。
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引用次数: 2
Guide for Authors 作者指南
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/S2667-1026(23)00055-4
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引用次数: 0
A hybrid network integrating convolution and transformer for thymoma segmentation 一种融合卷积和变换器的混合网络用于胸腺瘤分割
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2022.06.003
Jingyuan Li , Wenfang Sun , Xiulong Feng , Karen M. von Deneen , Wen Wang , Guangbin Cui , Yi Zhang

Background

Manual segmentation of thymoma is an onerous, labor-intensive, and subjective task for radiologists. Accordingly, the development of an automatic and efficient method for thymoma segmentation can be valuable for the early detection and diagnosis of this malignancy.

Methods

Three hundred and ten subjects were enrolled in this retrospective study and all underwent CECT scans. All the scans were manually labeled by four experienced radiologists. The successful application of convolution neural networks (CNNs) and Transformer in computer vision led us to propose a hybrid CNN–Transformer architecture, named transformer attention Net (TA-Net), that would allow the utilization of both local information from CNN features and the global information encoded by Transformers. U-Net was used as the basic structure and Transformers were inserted into convolution blocks in the encoder. In addition, attention gates were embedded in skip connections to highlight salient features. Comparison of the accuracy, intersection over Union (IoU), Dice score, and Boundary F1 contour matching score (BFScore) between the predicted segmentation and the manual labels were utilized to evaluate segmentation performance.

Results

For thymoma segmentation using TA-Net, the accuracy, Dice score, IoU, and BFScore were 92.49%, 89.92%, 83.80%, and 0.8945, respectively, and no significant differences were detected among tumor types and enhanced phases. Our proposed method achieved the best performance when compared with state-of-the-art methods.

Conclusion

The proposed method, which combines CNNs with Transformer, achives outstanding performance in thymoma segmentation compared with previous methods. TA-Net may provide consistent and reproducible delineation, thereby assisting radiologists in clinical applications.

背景胸腺瘤的手工分割对放射科医生来说是一项繁重、劳动密集和主观的任务。因此,开发一种自动有效的胸腺瘤分割方法对这种恶性肿瘤的早期检测和诊断具有价值。方法310名受试者参加了这项回顾性研究,所有受试者都接受了CECT扫描。所有的扫描都是由四位经验丰富的放射科医生手动标记的。卷积神经网络(CNNs)和Transformer在计算机视觉中的成功应用使我们提出了一种混合的CNN-Transformer架构,称为Transformer注意力网(TA-Net),该架构将允许利用来自CNN特征的局部信息和Transformer编码的全局信息。U-Net被用作基本结构,变换器被插入编码器的卷积块中。此外,在跳跃连接中嵌入了注意力门,以突出突出的特征。利用预测分割和手动标签之间的准确性、联合交集(IoU)、骰子分数和边界F1轮廓匹配分数(BFScore)的比较来评估分割性能。结果TA-Net对胸腺瘤的分割准确率、Dice评分、IoU和BFScore分别为92.49%、89.92%、83.80%和0.8945,肿瘤类型和增强期之间无显著差异。与最先进的方法相比,我们提出的方法实现了最佳性能。结论与以往的方法相比,该方法将细胞神经网络与Transformer相结合,在胸腺瘤分割中取得了显著的效果。TA Net可以提供一致且可重复的描绘,从而帮助放射科医生进行临床应用。
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引用次数: 0
Anti-hepatic carcinoma mechanisms of calycosin through targeting ferroptosis calycosin靶向脱铁性肝癌的抗肝癌机制
Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2023-08-01 DOI: 10.1016/j.imed.2022.06.001
Litao Nie , Yimei Liao , Rui Zhou , Xiao Liang , Xiaowei Wan , Xin Li , Min Su

Background

Ferroptosis, a pathologic state induced by lipid-driven oxidative stress, is associated with the development of human cancers. Calycosin, a natural compound with antioxidant and anti-inflammatory activities, has promising antitumor effects. However, the ferroptosis-related mechanism of calycosin in the treatment of hepatic carcinoma has not been reported.

Methods

This study applied network pharmacology and bioinformatic approaches (including Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis) to investigate the pharmacologic targets and mechanism of action of calycosin in the treatment of hepatic carcinoma through targeting ferroptosis. By searching online databases including The Cancer Genome Atlas, FerrDb, GeneCards, SwissTargetPrediction, SuperPred, BindingDB, TargetNet, BATMAN-TCM, and Drugbank, we identified 13 ferroptosis-related putative target genes of calycosin against hepatic carcinoma including IL-6, PTGS2, SRC, HRAS, NQO1, NOX4, PGK1, G6PD, GPI, MIF, NOS2, ALDOA, and SQSTM1.

Results

Molecular docking analysis revealed that calycosin potentially binded directly with the target proteins IL-6, PTGS2, and SRC. Functional enrichment analysis of these proteins indicated that they were involved in gluconeogenesis and apoptosis through regulation of ERK1, ERK2, and MAPK activities (P < 0.05).

Conclusion

Calycosin exerts antitumor effects in hepatic carcinoma by targeting ferroptosis through regulation of IL-6, PTGS2, and SRC.

背景脱铁症是一种由脂质驱动的氧化应激引起的病理状态,与人类癌症的发展有关。Calycosin是一种具有抗氧化和抗炎活性的天然化合物,具有良好的抗肿瘤作用。然而,calycosin治疗肝癌的脱铁相关机制尚未报道。方法应用网络药理学和生物信息学方法(包括Gene Ontology和Kyoto Encyclopedia of Genes and Genomes pathway富集分析),通过靶向脱铁性贫血,研究甲壳类毒素治疗肝癌的药理学靶点和作用机制。通过检索包括癌症基因组图谱、FerrDb、GeneCards、SwissTargetPrediction、SuperPred、BindingDB、TargetNet、BATMAN-TCM和Drugbank在内的在线数据库,我们鉴定了13个与脱铁性相关的calycosin抗肝癌的推定靶基因,包括IL-6、PTGS2、SRC、HRAS、NQO1、NOX4、PGK1、G6PD、GPI、MIF、NOS2、ALDOA、,和SQSTM1。结果分子对接分析显示,calycosin可能与靶蛋白IL-6、PTGS2和SRC直接结合。这些蛋白的功能富集分析表明,它们通过调节ERK1、ERK2和MAPK活性参与糖异生和细胞凋亡(P<;0.05)。
{"title":"Anti-hepatic carcinoma mechanisms of calycosin through targeting ferroptosis","authors":"Litao Nie ,&nbsp;Yimei Liao ,&nbsp;Rui Zhou ,&nbsp;Xiao Liang ,&nbsp;Xiaowei Wan ,&nbsp;Xin Li ,&nbsp;Min Su","doi":"10.1016/j.imed.2022.06.001","DOIUrl":"https://doi.org/10.1016/j.imed.2022.06.001","url":null,"abstract":"<div><h3>Background</h3><p>Ferroptosis, a pathologic state induced by lipid-driven oxidative stress, is associated with the development of human cancers. Calycosin, a natural compound with antioxidant and anti-inflammatory activities, has promising antitumor effects. However, the ferroptosis-related mechanism of calycosin in the treatment of hepatic carcinoma has not been reported.</p></div><div><h3>Methods</h3><p>This study applied network pharmacology and bioinformatic approaches (including Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis) to investigate the pharmacologic targets and mechanism of action of calycosin in the treatment of hepatic carcinoma through targeting ferroptosis. By searching online databases including The Cancer Genome Atlas, FerrDb, GeneCards, SwissTargetPrediction, SuperPred, BindingDB, TargetNet, BATMAN-TCM, and Drugbank, we identified 13 ferroptosis-related putative target genes of calycosin against hepatic carcinoma including <em>IL-6, PTGS2, SRC, HRAS, NQO1, NOX4, PGK1, G6PD, GPI, MIF, NOS2, ALDOA</em>, and <em>SQSTM1</em>.</p></div><div><h3>Results</h3><p>Molecular docking analysis revealed that calycosin potentially binded directly with the target proteins IL-6, PTGS2, and SRC. Functional enrichment analysis of these proteins indicated that they were involved in gluconeogenesis and apoptosis through regulation of ERK1, ERK2, and MAPK activities (<em>P</em> &lt; 0.05).</p></div><div><h3>Conclusion</h3><p>Calycosin exerts antitumor effects in hepatic carcinoma by targeting ferroptosis through regulation of IL-6, PTGS2, and SRC.</p></div>","PeriodicalId":73400,"journal":{"name":"Intelligent medicine","volume":"3 3","pages":"Pages 173-179"},"PeriodicalIF":0.0,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50194513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Intelligent medicine
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