首页 > 最新文献

International journal of evolutionary biology最新文献

英文 中文
Allelic Expression of Drosophila Protamines during Spermatogenesis. 果蝇精氨酸在精子发生过程中的等位基因表达。
Pub Date : 2012-01-01 DOI: 10.1155/2012/947381
Rachelle L Kanippayoor, Amanda J Moehring

In typical somatic cells, DNA is tightly organized by histones that are necessary for its proper packaging into the nucleus. In sexually-reproducing animals, the haploid product of male meiosis must be further condensed to fit within sperm heads, thus requiring an even greater degree of packaging. This is accomplished in most organisms by replacing histones with protamines, which allows DNA to be compacted into the reduced space. In mammals, protamines are produced after meiosis is complete and are transcribed by the single allele present in the haploid genome that is to be packaged into the sperm head. Here, we present our findings that protamine expression occurs from both alleles in diploid cells, rather than haploid cells, in two species of Drosophila. The differential allelic expression of protamines likely influences the selective pressures that shape their evolution.

在典型的体细胞中,DNA是由组蛋白紧密组织的,这是将DNA正确包装到细胞核中所必需的。在有性繁殖的动物中,雄性减数分裂的单倍体产物必须进一步压缩以适应精子头,因此需要更大程度的包装。在大多数生物体中,这是通过用蛋白蛋白代替组蛋白来完成的,这使得DNA被压缩到缩小的空间中。在哺乳动物中,蛋白蛋白在减数分裂完成后产生,并由单倍体基因组中的单个等位基因转录,该等位基因将被包装到精子头中。在这里,我们提出了我们的发现,鱼精蛋白的表达发生在二倍体细胞的两个等位基因,而不是单倍体细胞,在两种果蝇。蛋白蛋白的不同等位基因表达可能影响了形成其进化的选择压力。
{"title":"Allelic Expression of Drosophila Protamines during Spermatogenesis.","authors":"Rachelle L Kanippayoor,&nbsp;Amanda J Moehring","doi":"10.1155/2012/947381","DOIUrl":"https://doi.org/10.1155/2012/947381","url":null,"abstract":"<p><p>In typical somatic cells, DNA is tightly organized by histones that are necessary for its proper packaging into the nucleus. In sexually-reproducing animals, the haploid product of male meiosis must be further condensed to fit within sperm heads, thus requiring an even greater degree of packaging. This is accomplished in most organisms by replacing histones with protamines, which allows DNA to be compacted into the reduced space. In mammals, protamines are produced after meiosis is complete and are transcribed by the single allele present in the haploid genome that is to be packaged into the sperm head. Here, we present our findings that protamine expression occurs from both alleles in diploid cells, rather than haploid cells, in two species of Drosophila. The differential allelic expression of protamines likely influences the selective pressures that shape their evolution.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"947381"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/947381","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9728884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Drosophila melanogaster Selection for Survival of Bacillus cereus Infection: Life History Trait Indirect Responses. 黑腹果蝇对蜡样芽孢杆菌感染的生存选择:生活史、性状和间接反应。
Pub Date : 2012-01-01 DOI: 10.1155/2012/935970
Junjie Ma, Andrew K Benson, Stephen D Kachman, Zhen Hu, Lawrence G Harshman

To study evolved resistance/tolerance in an insect model, we carried out an experimental evolution study using D. melanogaster and the opportunistic pathogen B. cereus as the agent of selection. The selected lines evolved a 3.0- to 3.3-log increase in the concentration of spores required for 50% mortality after 18-24 generations of selection. In the absence of any treatment, selected lines evolved an increase in egg production and delayed development time. The latter response could be interpreted as a cost of evolution. Alternatively, delayed development might have been a target of selection resulting in increased adult fat body function including production of antimicrobial peptides, and, incidentally, yolk production for oocytes and eggs. When treated with autoclaved spores, the egg production difference between selected and control lines was abolished, and this response was consistent with the hypothesis of a cost of an induced immune response. Treatment with autoclaved spores also reduced life span in some cases and elicited early-age mortality in the selected and wound-control lines both of which were consistent with the hypothesis of a cost associated with induction of immune responses. In general, assays on egg production yielded key outcomes including the negative effect of autoclaved spores on egg production.

为了研究昆虫模型的进化抗性/耐受性,我们以黑腹扁蝽和条件致病菌蜡样芽孢杆菌为选择媒介进行了实验进化研究。经过18-24代的选择,所选品系的孢子浓度增加了3.0- 3.3倍,达到50%的死亡率。在没有任何处理的情况下,所选品种的产蛋量增加,发育时间延迟。后一种反应可以被解释为进化的代价。或者,延迟发育可能是选择的目标,导致成人脂肪体功能增加,包括抗菌肽的产生,顺便说一句,卵母细胞和卵子的蛋黄产生。当用高压灭菌的孢子处理时,选择系和对照系之间的产蛋差异被消除,这种反应与诱导免疫反应的成本假设一致。在某些情况下,用高压灭菌的孢子处理也缩短了寿命,并在选择和伤口控制系中引起早期死亡,这两者都符合与诱导免疫反应相关的成本假设。一般来说,对产蛋的分析得出了关键的结果,包括高压灭菌孢子对产蛋的负面影响。
{"title":"Drosophila melanogaster Selection for Survival of Bacillus cereus Infection: Life History Trait Indirect Responses.","authors":"Junjie Ma,&nbsp;Andrew K Benson,&nbsp;Stephen D Kachman,&nbsp;Zhen Hu,&nbsp;Lawrence G Harshman","doi":"10.1155/2012/935970","DOIUrl":"https://doi.org/10.1155/2012/935970","url":null,"abstract":"<p><p>To study evolved resistance/tolerance in an insect model, we carried out an experimental evolution study using D. melanogaster and the opportunistic pathogen B. cereus as the agent of selection. The selected lines evolved a 3.0- to 3.3-log increase in the concentration of spores required for 50% mortality after 18-24 generations of selection. In the absence of any treatment, selected lines evolved an increase in egg production and delayed development time. The latter response could be interpreted as a cost of evolution. Alternatively, delayed development might have been a target of selection resulting in increased adult fat body function including production of antimicrobial peptides, and, incidentally, yolk production for oocytes and eggs. When treated with autoclaved spores, the egg production difference between selected and control lines was abolished, and this response was consistent with the hypothesis of a cost of an induced immune response. Treatment with autoclaved spores also reduced life span in some cases and elicited early-age mortality in the selected and wound-control lines both of which were consistent with the hypothesis of a cost associated with induction of immune responses. In general, assays on egg production yielded key outcomes including the negative effect of autoclaved spores on egg production.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"935970"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/935970","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9729451","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Rapid Evolution of Assortative Fertilization between Recently Allopatric Species of Drosophila. 近期异域果蝇物种间配种受精的快速进化。
Pub Date : 2012-01-01 DOI: 10.1155/2012/285468
Yasir H Ahmed-Braimah, Bryant F McAllister

The virilis group of Drosophila represents a relatively unexplored but potentially useful model to investigate the genetics of speciation. Good resolution of phylogenetic relationships and the ability to obtain fertile hybrid offspring make the group especially promising for analysis of genetic changes underlying reproductive isolation separate from hybrid sterility and inviability. Phylogenetic analyses reveal a close relationship between the sister species, Drosophila americana and D. novamexicana, yet excepting their contemporary allopatric distributions, factors that contribute to reproductive isolation between this species pair remain uncharacterized. A previous report has shown reduced progeny numbers in laboratory crosses between the two species, especially when female D. novamexicana are crossed with male D. americana. We show that the hatch rate of eggs produced from heterospecific matings is reduced relative to conspecific matings. Failure of eggs to hatch, and consequent reduction in hybrid progeny number, is caused by low fertilization success of heterospecific sperm, thus representing a postmating, prezygotic incompatibility. Following insemination, storage and motility of heterospecific sperm is visibly compromised in female D. novamexicana. Our results provide evidence for a mechanism of reproductive isolation that is seldom reported for Drosophila species, and indicate the rapid evolution of postmating, prezygotic reproductive barriers in allopatry.

果蝇的阳刚体群代表了一个相对未被探索但潜在有用的模型来研究物种形成的遗传学。系统发育关系的良好解决和获得可育杂交后代的能力使该群体特别有希望分析与杂交不育和不育分离的生殖隔离的遗传变化。系统发育分析揭示了姐妹种美洲果蝇和新美洲果蝇之间的密切关系,但除了它们在当代的异域分布外,导致这对物种之间生殖隔离的因素尚未确定。先前的一份报告显示,在两个物种之间的实验室杂交中,后代数量减少,特别是当雌性新美西卡蝇与雄性美洲卡蝇杂交时。我们发现异种交配产生的卵的孵化率相对于同种交配降低。由于异种精子的受精成功率低,导致卵子孵化失败,从而导致杂交后代数量减少,因此代表了交配后,合子前不相容。在授精后,异种精子的储存和活力明显降低。我们的研究结果为果蝇物种的生殖隔离机制提供了证据,这一机制很少被报道,并表明了异种生殖中交配后、合子前的生殖屏障的快速进化。
{"title":"Rapid Evolution of Assortative Fertilization between Recently Allopatric Species of Drosophila.","authors":"Yasir H Ahmed-Braimah,&nbsp;Bryant F McAllister","doi":"10.1155/2012/285468","DOIUrl":"https://doi.org/10.1155/2012/285468","url":null,"abstract":"<p><p>The virilis group of Drosophila represents a relatively unexplored but potentially useful model to investigate the genetics of speciation. Good resolution of phylogenetic relationships and the ability to obtain fertile hybrid offspring make the group especially promising for analysis of genetic changes underlying reproductive isolation separate from hybrid sterility and inviability. Phylogenetic analyses reveal a close relationship between the sister species, Drosophila americana and D. novamexicana, yet excepting their contemporary allopatric distributions, factors that contribute to reproductive isolation between this species pair remain uncharacterized. A previous report has shown reduced progeny numbers in laboratory crosses between the two species, especially when female D. novamexicana are crossed with male D. americana. We show that the hatch rate of eggs produced from heterospecific matings is reduced relative to conspecific matings. Failure of eggs to hatch, and consequent reduction in hybrid progeny number, is caused by low fertilization success of heterospecific sperm, thus representing a postmating, prezygotic incompatibility. Following insemination, storage and motility of heterospecific sperm is visibly compromised in female D. novamexicana. Our results provide evidence for a mechanism of reproductive isolation that is seldom reported for Drosophila species, and indicate the rapid evolution of postmating, prezygotic reproductive barriers in allopatry.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"285468"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/285468","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9743749","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 21
Comparative analyses of homocitrate synthase genes of ascomycetous yeasts. 子囊菌高柠檬酸合成酶基因的比较分析。
Pub Date : 2012-01-01 DOI: 10.1155/2012/254941
Hiromi Nishida

Most ascomycetous yeasts have 2 homocitrate synthases (HCSs). Among the fungal lysine biosynthesis-related genes, only the HCS gene was duplicated in the course of evolution. It was recently reported that HCS of Saccharomyces cerevisiae has an additional function in nuclear activities involving chromatin regulation related to DNA damage repair, which is not related to lysine biosynthesis. Thus, it is possible that the bifunctionality is associated with HCS gene duplication. Phylogenetic analysis showed that duplication has occurred multiple times during evolution of the ascomycetous yeasts. It is likely that the HCS gene duplication in S. cerevisiae occurred in the course of Saccharomyces evolution. Although the nucleosome position profiles of the two S. cerevisiae HCS genes were similar in the coding regions, they were different in the promoter regions, suggesting that they are subject to different regulatory controls. S. cerevisiae has maintained HCS activity for lysine biosynthesis and has obtained bifunctionality.

大多数子囊菌具有2种高柠檬酸合成酶(hcs)。在真菌赖氨酸生物合成相关基因中,只有HCS基因在进化过程中被复制。最近有报道称,酿酒酵母的HCS在核活动中具有与DNA损伤修复相关的染色质调节的附加功能,而这与赖氨酸的生物合成无关。因此,双功能可能与HCS基因复制有关。系统发育分析表明,在子囊酵母的进化过程中发生了多次重复。酿酒酵母的HCS基因复制很可能发生在酿酒酵母的进化过程中。虽然两个酿酒酵母HCS基因的核小体位置谱在编码区域相似,但在启动子区域不同,表明它们受不同的调控控制。酿酒酵母保持了赖氨酸生物合成的HCS活性,并获得了双功能。
{"title":"Comparative analyses of homocitrate synthase genes of ascomycetous yeasts.","authors":"Hiromi Nishida","doi":"10.1155/2012/254941","DOIUrl":"https://doi.org/10.1155/2012/254941","url":null,"abstract":"<p><p>Most ascomycetous yeasts have 2 homocitrate synthases (HCSs). Among the fungal lysine biosynthesis-related genes, only the HCS gene was duplicated in the course of evolution. It was recently reported that HCS of Saccharomyces cerevisiae has an additional function in nuclear activities involving chromatin regulation related to DNA damage repair, which is not related to lysine biosynthesis. Thus, it is possible that the bifunctionality is associated with HCS gene duplication. Phylogenetic analysis showed that duplication has occurred multiple times during evolution of the ascomycetous yeasts. It is likely that the HCS gene duplication in S. cerevisiae occurred in the course of Saccharomyces evolution. Although the nucleosome position profiles of the two S. cerevisiae HCS genes were similar in the coding regions, they were different in the promoter regions, suggesting that they are subject to different regulatory controls. S. cerevisiae has maintained HCS activity for lysine biosynthesis and has obtained bifunctionality.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"254941"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/254941","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9728880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differences in Chemical Sexual Signals May Promote Reproductive Isolation and Cryptic Speciation between Iberian Wall Lizard Populations. 化学性信号的差异可能促进伊比利亚壁虎种群之间的生殖隔离和隐种形成。
Pub Date : 2012-01-01 DOI: 10.1155/2012/698520
Marianne Gabirot, Pilar López, José Martín

Interpopulational variation in sexual signals may lead to premating reproductive isolation and speciation. Genetic and morphological studies suggest that the Iberian wall lizard, Podarcis hispanica, forms part of a "species complex" with several cryptic species. We explored the role of chemical sexual signals in interpopulational recognition between five distinct populations of Iberian wall lizards in Central Spain. Results showed that these populations differed in morphology and in composition and proportion of chemical compounds in femoral gland secretions of males. Tongue-flick experiments indicated that male and female lizards discriminated and were more interested in scents of lizards from their own area (i.e., Northern versus Southern populations), but did not discriminate between all populations. Moreover, only males from the populations that are geographically located more far away preferred scent of females from their own population. These data suggest that, at least between some populations, there may be reproductive isolation mediated by chemical signals and cryptic speciation.

性信号的种群间变异可能导致过早交配、生殖隔离和物种形成。遗传和形态学研究表明,伊比利亚壁虎(Podarcis hispanica)与几个隐蔽物种构成了一个“物种复合体”的一部分。我们探讨了化学性信号在西班牙中部五个不同的伊比利亚壁蜥种群间识别中的作用。结果表明,这些种群在形态和雄性股腺分泌物中化合物的组成及比例上存在差异。舌弹实验表明,雄性和雌性蜥蜴对来自自己地区(即北方和南方种群)的蜥蜴的气味更感兴趣,但对所有种群都没有区别。此外,只有地理位置较远的种群中的雄性更喜欢自己种群中雌性的气味。这些数据表明,至少在某些种群之间,可能存在由化学信号和隐种形成介导的生殖隔离。
{"title":"Differences in Chemical Sexual Signals May Promote Reproductive Isolation and Cryptic Speciation between Iberian Wall Lizard Populations.","authors":"Marianne Gabirot,&nbsp;Pilar López,&nbsp;José Martín","doi":"10.1155/2012/698520","DOIUrl":"https://doi.org/10.1155/2012/698520","url":null,"abstract":"<p><p>Interpopulational variation in sexual signals may lead to premating reproductive isolation and speciation. Genetic and morphological studies suggest that the Iberian wall lizard, Podarcis hispanica, forms part of a \"species complex\" with several cryptic species. We explored the role of chemical sexual signals in interpopulational recognition between five distinct populations of Iberian wall lizards in Central Spain. Results showed that these populations differed in morphology and in composition and proportion of chemical compounds in femoral gland secretions of males. Tongue-flick experiments indicated that male and female lizards discriminated and were more interested in scents of lizards from their own area (i.e., Northern versus Southern populations), but did not discriminate between all populations. Moreover, only males from the populations that are geographically located more far away preferred scent of females from their own population. These data suggest that, at least between some populations, there may be reproductive isolation mediated by chemical signals and cryptic speciation.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"698520"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/698520","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9367574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 38
Genome Signature Difference between Deinococcus radiodurans and Thermus thermophilus. 耐辐射球菌与嗜热热球菌基因组特征的差异。
Pub Date : 2012-01-01 DOI: 10.1155/2012/205274
Hiromi Nishida, Reina Abe, Taishi Nagayama, Kentaro Yano

The extremely radioresistant bacteria of the genus Deinococcus and the extremely thermophilic bacteria of the genus Thermus belong to a common taxonomic group. Considering the distinct living environments of Deinococcus and Thermus, different genes would have been acquired through horizontal gene transfer after their divergence from a common ancestor. Their guanine-cytosine (GC) contents are similar; however, we hypothesized that their genomic signatures would be different. Our findings indicated that the genomes of Deinococcus radiodurans and Thermus thermophilus have different tetranucleotide frequencies. This analysis showed that the genome signature of D. radiodurans is most similar to that of Pseudomonas aeruginosa, whereas the genome signature of T. thermophilus is most similar to that of Thermanaerovibrio acidaminovorans. This difference in genome signatures may be related to the different evolutionary backgrounds of the 2 genera after their divergence from a common ancestor.

极耐辐射的球菌属细菌和极嗜热的热菌属细菌属于一个共同的分类群。考虑到Deinococcus和Thermus不同的生存环境,在它们从一个共同的祖先分化后,通过水平基因转移获得了不同的基因。它们的鸟嘌呤-胞嘧啶(GC)含量相似;然而,我们假设他们的基因组特征是不同的。我们的研究结果表明,耐辐射球菌和嗜热球菌的基因组具有不同的四核苷酸频率。分析结果表明,耐辐射单胞菌的基因组特征与铜绿假单胞菌最为相似,而嗜热单胞菌的基因组特征与嗜酸氨基酸热弧菌最为相似。这种基因组特征的差异可能与两属从共同祖先分化后的不同进化背景有关。
{"title":"Genome Signature Difference between Deinococcus radiodurans and Thermus thermophilus.","authors":"Hiromi Nishida,&nbsp;Reina Abe,&nbsp;Taishi Nagayama,&nbsp;Kentaro Yano","doi":"10.1155/2012/205274","DOIUrl":"https://doi.org/10.1155/2012/205274","url":null,"abstract":"<p><p>The extremely radioresistant bacteria of the genus Deinococcus and the extremely thermophilic bacteria of the genus Thermus belong to a common taxonomic group. Considering the distinct living environments of Deinococcus and Thermus, different genes would have been acquired through horizontal gene transfer after their divergence from a common ancestor. Their guanine-cytosine (GC) contents are similar; however, we hypothesized that their genomic signatures would be different. Our findings indicated that the genomes of Deinococcus radiodurans and Thermus thermophilus have different tetranucleotide frequencies. This analysis showed that the genome signature of D. radiodurans is most similar to that of Pseudomonas aeruginosa, whereas the genome signature of T. thermophilus is most similar to that of Thermanaerovibrio acidaminovorans. This difference in genome signatures may be related to the different evolutionary backgrounds of the 2 genera after their divergence from a common ancestor.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"205274"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/205274","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9374941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Clarifying some fundamental errors in herries' "a chronological perspective on the acheulian and its transition to the middle stone age in southern Africa: the question of the fauresmith" (2011). 澄清herries的“阿舍利派及其在南部非洲向中石器时代过渡的时间视角:fauresmith的问题”(2011)中的一些基本错误。
Pub Date : 2012-01-01 DOI: 10.1155/2012/230156
Lawrence Barham

Herries provides a timely review of the archaeological and dating evidence of the transition from the Acheulean to the Middle Stone Age (MSA) in southern Africa, however, in relation to the site of Twin Rivers, Zambia he makes several fundamental errors of interpretation that demand correction. The stratigraphic sequence of the site is admittedly complex, but it deserves a more careful analysis than that offered by Herries. This detailed response by the most recent excavator of the site addresses Herries critique by placing the site in its historical context and then dealing with the central issue of the association of dated speleothem with the surviving archaeological deposits. Herries is shown to have mistakenly combined the dates from two separate cave passages and to have misunderstood the published sections, plans, and taphonomic assessment of each excavation area. His reinterpretation of the site as being significantly younger than published is based on a conflation of unrelated data.

Herries及时地回顾了非洲南部从阿舍利时代到中石器时代(MSA)过渡的考古和年代证据,然而,在与赞比亚双河遗址的关系中,他犯了几个需要纠正的基本解释错误。无可否认,该遗址的地层序列是复杂的,但它值得比亨利斯提供的更仔细的分析。最近发掘该遗址的挖掘机的详细回应通过将该遗址置于其历史背景中,然后处理将年代久远的洞穴与幸存的考古沉积物联系起来的中心问题,解决了Herries的批评。研究表明,亨利错误地将两个独立洞穴通道的日期组合在一起,并且误解了已公布的每个挖掘区域的剖面、平面图和地貌学评估。他对该网站的重新解释是,它比发表的要年轻得多,这是基于对不相关数据的合并。
{"title":"Clarifying some fundamental errors in herries' \"a chronological perspective on the acheulian and its transition to the middle stone age in southern Africa: the question of the fauresmith\" (2011).","authors":"Lawrence Barham","doi":"10.1155/2012/230156","DOIUrl":"https://doi.org/10.1155/2012/230156","url":null,"abstract":"<p><p>Herries provides a timely review of the archaeological and dating evidence of the transition from the Acheulean to the Middle Stone Age (MSA) in southern Africa, however, in relation to the site of Twin Rivers, Zambia he makes several fundamental errors of interpretation that demand correction. The stratigraphic sequence of the site is admittedly complex, but it deserves a more careful analysis than that offered by Herries. This detailed response by the most recent excavator of the site addresses Herries critique by placing the site in its historical context and then dealing with the central issue of the association of dated speleothem with the surviving archaeological deposits. Herries is shown to have mistakenly combined the dates from two separate cave passages and to have misunderstood the published sections, plans, and taphonomic assessment of each excavation area. His reinterpretation of the site as being significantly younger than published is based on a conflation of unrelated data.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"230156"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/230156","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9375080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
Evolutionary History of Lake Tanganyika's Predatory Deepwater Cichlids. 坦噶尼喀湖深海捕食性鲷的进化史。
Pub Date : 2012-01-01 DOI: 10.1155/2012/716209
Paul C Kirchberger, Kristina M Sefc, Christian Sturmbauer, Stephan Koblmüller

Hybridization among littoral cichlid species in Lake Tanganyika was inferred in several molecular phylogenetic studies. The phenomenon is generally attributed to the lake level-induced shoreline and habitat changes. These allow for allopatric divergence of geographically fragmented populations alternating with locally restricted secondary contact and introgression between incompletely isolated taxa. In contrast, the deepwater habitat is characterized by weak geographic structure and a high potential for gene flow, which may explain the lower species richness of deepwater than littoral lineages. For the same reason, divergent deepwater lineages should have evolved strong intrinsic reproductive isolation already in the incipient stages of diversification, and, consequently, hybridization among established lineages should have been less frequent than in littoral lineages. We test this hypothesis in the endemic Lake Tanganyika deepwater cichlid tribe Bathybatini by comparing phylogenetic trees of Hemibates and Bathybates species obtained with nuclear multilocus AFLP data with a phylogeny based on mitochondrial sequences. Consistent with our hypothesis, largely congruent tree topologies and negative tests for introgression provided no evidence for introgressive hybridization between the deepwater taxa. Together, the nuclear and mitochondrial data established a well-supported phylogeny and suggested ecological segregation during speciation.

通过分子系统发育研究,推测坦噶尼喀湖沿岸慈鲷物种间存在杂交现象。这种现象一般归因于湖泊水位引起的岸线和栖息地的变化。这允许地理上分散的种群的异域分化与局部限制的次级接触和不完全隔离的分类群之间的渐渗交替发生。深水生境地理结构弱,基因流动潜力大,这可能是深水生境物种丰富度低于沿海生境的原因。出于同样的原因,在多样化的初始阶段,不同的深水谱系应该已经进化出强烈的内在生殖隔离,因此,在已建立的谱系之间的杂交应该比在沿海谱系中更少。我们在坦噶尼喀湖特有的深水鲷部落Bathybatini中验证了这一假设,通过比较利用核多位点AFLP数据获得的Hemibates和Bathybates物种的系统发育树和基于线粒体序列的系统发育。与我们的假设一致的是,基本一致的树拓扑结构和阴性的渐渗测试没有提供证据表明深水分类群之间存在渐渗杂交。总之,核和线粒体数据建立了一个很好的支持系统发育,并提出在物种形成过程中的生态分离。
{"title":"Evolutionary History of Lake Tanganyika's Predatory Deepwater Cichlids.","authors":"Paul C Kirchberger,&nbsp;Kristina M Sefc,&nbsp;Christian Sturmbauer,&nbsp;Stephan Koblmüller","doi":"10.1155/2012/716209","DOIUrl":"https://doi.org/10.1155/2012/716209","url":null,"abstract":"<p><p>Hybridization among littoral cichlid species in Lake Tanganyika was inferred in several molecular phylogenetic studies. The phenomenon is generally attributed to the lake level-induced shoreline and habitat changes. These allow for allopatric divergence of geographically fragmented populations alternating with locally restricted secondary contact and introgression between incompletely isolated taxa. In contrast, the deepwater habitat is characterized by weak geographic structure and a high potential for gene flow, which may explain the lower species richness of deepwater than littoral lineages. For the same reason, divergent deepwater lineages should have evolved strong intrinsic reproductive isolation already in the incipient stages of diversification, and, consequently, hybridization among established lineages should have been less frequent than in littoral lineages. We test this hypothesis in the endemic Lake Tanganyika deepwater cichlid tribe Bathybatini by comparing phylogenetic trees of Hemibates and Bathybates species obtained with nuclear multilocus AFLP data with a phylogeny based on mitochondrial sequences. Consistent with our hypothesis, largely congruent tree topologies and negative tests for introgression provided no evidence for introgressive hybridization between the deepwater taxa. Together, the nuclear and mitochondrial data established a well-supported phylogeny and suggested ecological segregation during speciation.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"716209"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/716209","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9380449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Chromatin evolution and molecular drive in speciation. 物种形成中的染色质进化和分子驱动。
Pub Date : 2012-01-01 DOI: 10.1155/2012/301894
Kyoichi Sawamura

Are there biological generalities that underlie hybrid sterility or inviability? Recently, around a dozen "speciation genes" have been identified mainly in Drosophila, and the biological functions of these genes are revealing molecular generalities. Major cases of hybrid sterility and inviability seem to result from chromatin evolution and molecular drive in speciation. Repetitive satellite DNAs within heterochromatin, especially at centromeres, evolve rapidly through molecular drive mechanisms (both meiotic and centromeric). Chromatin-binding proteins, therefore, must also evolve rapidly to maintain binding capability. As a result, chromatin binding proteins may not be able to interact with chromosomes from another species in a hybrid, causing hybrid sterility and inviability.

杂交不育或不育是否存在生物学上的共性?近年来,主要在果蝇中发现了十几个“物种形成基因”,这些基因的生物学功能揭示了分子共性。杂交不育和不育的主要原因似乎是染色质进化和物种形成中的分子驱动。异染色质内的重复卫星dna,特别是在着丝粒上,通过分子驱动机制(减数分裂和着丝粒)快速进化。因此,染色质结合蛋白也必须快速进化以保持结合能力。因此,染色质结合蛋白可能无法与杂种中其他物种的染色体相互作用,从而导致杂种不育和不育。
{"title":"Chromatin evolution and molecular drive in speciation.","authors":"Kyoichi Sawamura","doi":"10.1155/2012/301894","DOIUrl":"https://doi.org/10.1155/2012/301894","url":null,"abstract":"<p><p>Are there biological generalities that underlie hybrid sterility or inviability? Recently, around a dozen \"speciation genes\" have been identified mainly in Drosophila, and the biological functions of these genes are revealing molecular generalities. Major cases of hybrid sterility and inviability seem to result from chromatin evolution and molecular drive in speciation. Repetitive satellite DNAs within heterochromatin, especially at centromeres, evolve rapidly through molecular drive mechanisms (both meiotic and centromeric). Chromatin-binding proteins, therefore, must also evolve rapidly to maintain binding capability. As a result, chromatin binding proteins may not be able to interact with chromosomes from another species in a hybrid, causing hybrid sterility and inviability.</p>","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":"2012 ","pages":"301894"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/301894","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9432064","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 21
Mechanisms of speciation. 物种形成机制。
Pub Date : 2012-01-01 Epub Date: 2012-05-09 DOI: 10.1155/2012/820358
Kyoichi Sawamura, Chau-Ti Ting, Artyom Kopp, Leonie C Moyle
“Speciation” was largely “speculation” two decades ago, at least with respect to a detailed and comprehensive mechanistic understanding of the origin of new species. Despite elegant classical work examining the genetic basis of interspecific differences and reproductive isolation and complementary studies of the ecological factors that can contribute to species divergence, speciation researchers lacked the tools to dissect the specific forces, traits, and genes involved. Thanks to the recent advances in molecular biology and genomic sequencing, detailed study of speciation is becoming feasible in many animal and plant groups. In fact, a dozen of “speciation genes” responsible for reproductive isolation between sibling species have been identified at the molecular level. Further, genetic changes leading to morphological differentiation among related species have been elucidated, supported by phylogenetic analyses at high resolution. We invited investigators to contribute both original research and review articles that would stimulate the continuing efforts to understand speciation and species differentiation from all perspectives, not only the genetic mechanisms but also the ecological and evolutionary causes. Among the seven original articles in this special issue, four were Drosophila studies. Two of them focus on the mechanisms of reproductive isolation. A. Takahashi et al. in “Cuticular hydrocarbon content that affects male mate preference of Drosophila melanogaster from west Africa” identified a polymorphic chemical cue involved in mate recognition between sibling species. Y. H. Ahmed-Braimah and B. F. McAllister in “Rapid evolution of assortative fertilization between recently allopatric species of Drosophila” described an example of postmating/prezygotic isolation, where heterospecific fertilization after mating is compromised due to disruptions in sperm storage and motility. Often, reproductive isolation evolves more rapidly than any morphological traits so that the only way to distinguish recently diverged species is through mating experiments. Y.-F. Li et al. in “DNA barcoding and molecular phylogeny of Drosophila lini and its sibling species” showed that molecular variation can also be widely shared between sibling species despite strong reproductive isolation between them. To understand why reproductive isolation can evolve so rapidly compared to other traits, L. Muller et al. in “Inter- and intraspecific variation in Drosophila genes with sex-biased expression” examined the evolution of gene expression and protein sequences and found that genes with male-biased expression tend to diverge rapidly compared to the rest of the genome. Three other original articles deal with reproductive isolation in vertebrates, specifically fish or reptiles. D. Bierbach et al. in “Divergent evolution of male aggressive behavior: another reproductive isolation barrier in extremophile poeciliid fishes?” reported a rare case study of behavioral isolat
{"title":"Mechanisms of speciation.","authors":"Kyoichi Sawamura,&nbsp;Chau-Ti Ting,&nbsp;Artyom Kopp,&nbsp;Leonie C Moyle","doi":"10.1155/2012/820358","DOIUrl":"https://doi.org/10.1155/2012/820358","url":null,"abstract":"“Speciation” was largely “speculation” two decades ago, at least with respect to a detailed and comprehensive mechanistic understanding of the origin of new species. Despite elegant classical work examining the genetic basis of interspecific differences and reproductive isolation and complementary studies of the ecological factors that can contribute to species divergence, speciation researchers lacked the tools to dissect the specific forces, traits, and genes involved. Thanks to the recent advances in molecular biology and genomic sequencing, detailed study of speciation is becoming feasible in many animal and plant groups. In fact, a dozen of “speciation genes” responsible for reproductive isolation between sibling species have been identified at the molecular level. Further, genetic changes leading to morphological differentiation among related species have been elucidated, supported by phylogenetic analyses at high resolution. We invited investigators to contribute both original research and review articles that would stimulate the continuing efforts to understand speciation and species differentiation from all perspectives, not only the genetic mechanisms but also the ecological and evolutionary causes. \u0000 \u0000Among the seven original articles in this special issue, four were Drosophila studies. Two of them focus on the mechanisms of reproductive isolation. A. Takahashi et al. in “Cuticular hydrocarbon content that affects male mate preference of Drosophila melanogaster from west Africa” identified a polymorphic chemical cue involved in mate recognition between sibling species. Y. H. Ahmed-Braimah and B. F. McAllister in “Rapid evolution of assortative fertilization between recently allopatric species of Drosophila” described an example of postmating/prezygotic isolation, where heterospecific fertilization after mating is compromised due to disruptions in sperm storage and motility. Often, reproductive isolation evolves more rapidly than any morphological traits so that the only way to distinguish recently diverged species is through mating experiments. Y.-F. Li et al. in “DNA barcoding and molecular phylogeny of Drosophila lini and its sibling species” showed that molecular variation can also be widely shared between sibling species despite strong reproductive isolation between them. To understand why reproductive isolation can evolve so rapidly compared to other traits, L. Muller et al. in “Inter- and intraspecific variation in Drosophila genes with sex-biased expression” examined the evolution of gene expression and protein sequences and found that genes with male-biased expression tend to diverge rapidly compared to the rest of the genome. \u0000 \u0000Three other original articles deal with reproductive isolation in vertebrates, specifically fish or reptiles. D. Bierbach et al. in “Divergent evolution of male aggressive behavior: another reproductive isolation barrier in extremophile poeciliid fishes?” reported a rare case study of behavioral isolat","PeriodicalId":73449,"journal":{"name":"International journal of evolutionary biology","volume":" ","pages":"820358"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/820358","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30656142","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
International journal of evolutionary biology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1