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Bent perfect crystals as X-ray focusing polychromators in symmetric Laue geometry. 弯曲完美晶体作为x射线聚焦多色器在对称劳几何。
IF 1.8 4区 材料科学 Pub Date : 2013-01-01 Epub Date: 2012-11-30 DOI: 10.1107/S0108767312044601
J P Guigay, C Ferrero, D Bhattacharyya, O Mathon, S Pascarelli

The focusing properties of cylindrically bent crystals in symmetric Laue geometry are discussed using the formalism of Fresnel diffraction and the analytical solution of the Takagi-Taupin equations for a point source on the entrance surface. The existence of a focal shift in the dynamical focusing effect is pointed out and discussed. The present theoretical framework is applied to experiments performed at the energy-dispersive X-ray absorption spectroscopy beamline of the European Synchrotron Radiation Facility concerning the position and the size of the focal spot obtained from a polychromatic source at a large distance from the bent crystal.

利用菲涅耳衍射的形式和入口表面点源的Takagi-Taupin方程的解析解,讨论了对称劳埃几何中圆柱弯曲晶体的聚焦特性。指出并讨论了动态聚焦效应中焦移的存在。本文将该理论框架应用于欧洲同步辐射装置的能量色散x射线吸收光谱束线上的实验,研究了从距离弯曲晶体较远的多色源获得的焦斑的位置和大小。
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引用次数: 4
The significance of Bragg's law in electron diffraction and microscopy, and Bragg's second law. 布拉格定律在电子衍射和显微术中的意义,以及布拉格第二定律。
IF 1.8 4区 材料科学 Pub Date : 2013-01-01 Epub Date: 2012-12-05 DOI: 10.1107/S0108767312047587
C J Humphreys

Bragg's second law, which deserves to be more widely known, is recounted. The significance of Bragg's law in electron diffraction and microscopy is then discussed, with particular emphasis on differences between X-ray and electron diffraction. As an example of such differences, the critical voltage effect in electron diffraction is described. It is then shown that the lattice imaging of crystals in high-resolution electron microscopy directly reveals the Bragg planes used for the imaging process, exactly as visualized by Bragg in his real-space law. Finally, it is shown how in 2012, for the first time, on the centennial anniversary of Bragg's law, single atoms have been identified in an electron microscope using X-rays emitted from the specimen. Hence atomic resolution X-ray maps of a crystal in real space can be formed which give the positions and identities of the different atoms in the crystal, or of a single impurity atom in the crystal.

布拉格第二定律,值得更广泛的了解,叙述。然后讨论了布拉格定律在电子衍射和显微镜中的意义,特别强调了x射线和电子衍射的区别。作为这种差异的一个例子,描述了电子衍射中的临界电压效应。然后证明了在高分辨率电子显微镜下晶体的晶格成像直接揭示了用于成像过程的布拉格平面,与布拉格在他的实空间定律中所描述的完全一致。最后,它展示了如何在2012年,在布拉格定律的一百周年纪念上,第一次在电子显微镜下使用样品发射的x射线识别出单个原子。因此,可以形成晶体在实际空间中的原子分辨率x射线图,给出晶体中不同原子或晶体中单个杂质原子的位置和身份。
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引用次数: 28
Lawrence Bragg, microdiffraction and X-ray lasers. 劳伦斯·布拉格,微衍射和x射线激光器。
IF 1.8 4区 材料科学 Pub Date : 2013-01-01 Epub Date: 2012-12-18 DOI: 10.1107/S0108767312046296
J C H Spence

We trace the historical development of W. L. Bragg's `law' and the key experimental observation which made it possible using polychromatic radiation at a time when neither X-ray wavelengths nor cell constants were known. This led, through his phasing and solving large mineral structures (without use of a computer), to work on metals, proteins, bubble rafts and his X-ray microscope. The relationship of this to early X-ray microdiffraction is outlined, followed by a brief review of electron microdiffraction methods, where electron-probe sizes smaller than one unit cell can be formed with an interesting `failure' of Bragg's law. We end with a review of recent femtosecond X-ray `snapshot' diffraction from protein nanocrystals, using an X-ray laser which generates pulses so short that they terminate before radiation damage can commence, yet subsequently destroy the sample. In this way, using short pulses instead of freezing, the nexus between dose, resolution and crystal size has been broken, opening the way to time-resolved diffraction without damage for a stream of identical particles.

我们追溯了W. L.布拉格“定律”的历史发展和关键的实验观察,这使得在x射线波长和细胞常数都不知道的时候使用多色辐射成为可能。这导致他通过相位和解决大型矿物结构(不使用计算机),研究金属,蛋白质,气泡筏和他的x射线显微镜。概述了这与早期x射线微衍射的关系,然后简要回顾了电子微衍射方法,其中电子探针尺寸小于一个单位电池可以形成一个有趣的“失效”布拉格定律。最后,我们回顾了最近从蛋白质纳米晶体中获得的飞秒x射线“快照”衍射,使用x射线激光器产生如此短的脉冲,以至于它们在辐射损伤开始之前终止,但随后破坏了样品。通过这种方式,使用短脉冲代替冻结,剂量、分辨率和晶体尺寸之间的联系被打破,为时间分辨衍射开辟了道路,而不会损害一束相同的粒子。
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引用次数: 7
An algorithm for the arithmetic classification of multilattices. 多维格的一种算法分类。
IF 1.8 4区 材料科学 Pub Date : 2013-01-01 Epub Date: 2012-11-14 DOI: 10.1107/S010876731203629X
Giuliana Indelicato

A procedure for the construction and the classification of monoatomic multilattices in arbitrary dimension is developed. The algorithm allows one to determine the location of the points of all monoatomic multilattices with a given symmetry, or to determine whether two assigned multilattices are arithmetically equivalent. This approach is based on ideas from integral matrix theory, in particular the reduction to the Smith normal form, and can be coded to provide a classification software package.

给出了任意维单原子多晶格的构造和分类方法。该算法允许人们确定具有给定对称性的所有单原子多格点的位置,或者确定两个指定的多格是否在算术上相等。这种方法基于积分矩阵理论的思想,特别是对史密斯范式的简化,并且可以编码为提供分类软件包。
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引用次数: 3
Continuous X-ray diffractive field in protein nanocrystallography. 连续x射线衍射场在蛋白质纳米晶体学中的应用。
IF 1.8 4区 材料科学 Pub Date : 2013-01-01 Epub Date: 2012-11-16 DOI: 10.1107/S0108767312042535
Ruben A Dilanian, Victor A Streltsov, Harry M Quiney, Keith A Nugent
The recent development of X-ray free-electron laser sources has created new opportunities for the structural analysis of protein nanocrystals. The extremely small sizes of the crystals, as well as imperfections of the crystal structure, result in an interference phenomenon in the diffraction pattern. With decreasing crystallite size the structural imperfections play a role in the formation of the diffraction pattern that is comparable in importance to the size effects and should be taken into account during the data analysis and structure reconstruction processes. There now exists a need to develop new methods of protein structure determination that do not depend on the availability of good-quality crystals and that can treat proteins under conditions close to the active form. This paper demonstrates an approach that is specifically tailored to nanocrystalline samples and offers a unique crystallographic solution.
近年来x射线自由电子激光源的发展为蛋白质纳米晶体的结构分析创造了新的机会。晶体的极小尺寸以及晶体结构的缺陷导致了衍射图样中的干涉现象。随着晶粒尺寸的减小,结构缺陷在衍射图样的形成中起着与尺寸效应同等重要的作用,在数据分析和结构重建过程中应予以考虑。现在有必要开发新的蛋白质结构测定方法,这种方法不依赖于高质量晶体的可用性,并且可以在接近活性形式的条件下处理蛋白质。本文展示了一种专门针对纳米晶体样品的方法,并提供了一种独特的晶体学解决方案。
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引用次数: 20
Evolution of diffraction methods for solving crystal structures. 求解晶体结构的衍射方法的演变。
IF 1.8 4区 材料科学 Pub Date : 2013-01-01 Epub Date: 2012-12-18 DOI: 10.1107/S0108767312050453
Wayne A Hendrickson

The discovery of X-ray diffraction in 1912 by Laue and co-workers had important implications for the physics of diffraction, for the nature of X-radiation and for the structure of matter. Lawrence Bragg made important contributions to early developments in each of these areas, but the most pregnant of his innovations was in structure determination from X-ray diffraction data. He continued to make highly significant contributions to structure determination right on to the first crystal structures of proteins. Crystallography has made substantial contributions to chemistry and biology, and notably so for biological macromolecules.

1912年劳厄和他的同事发现了x射线衍射,这对衍射物理学、x射线的性质和物质的结构都有重要的意义。劳伦斯·布拉格对这些领域的早期发展都做出了重要贡献,但他最具创新意义的是利用x射线衍射数据确定结构。他继续对结构测定做出了非常重要的贡献,直到蛋白质的第一个晶体结构。晶体学对化学和生物学,特别是对生物大分子的研究做出了重大贡献。
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引用次数: 21
Absorption correction A* for cylindrical and spherical samples with extended range and high accuracy calculated by the Thorkildsen and Larsen analytical method. 采用Thorkildsen和Larsen分析方法计算圆柱和球形样品的吸收校正A*,具有扩展范围和高精度。
IF 1.8 4区 材料科学 Pub Date : 2012-11-01 Epub Date: 2012-10-18 DOI: 10.1107/S0108767312039505
Hua-Chen Hu, Chao Yang, Kai Zhao

Tables of the absorption correction A* for cylindrical and spherical crystals were calculated by the Thorkildsen & Larsen [Acta Cryst. (1998), A54, 186-190] analytical method in the range of 0 ≤ μR ≤ 30 and 0 ≤ θ ≤ 90° with accuracies of 10(-6) for cylindrical crystals and 2.0 × 10(-6) for spherical crystals. Bivariate Chebyshev polynomial fitting formulae for A* are also provided for both cases. The maximum fitting error for spherical crystals is 6 × 10(-3) and the average error ranges from 7 × 10(-5) to 3 × 10(-4). All the important tables and the fitting program are provided in the supplementary material.

利用Thorkildsen & Larsen[晶体学报]计算了圆柱晶体和球形晶体的吸收改正量A*表。在0≤μR≤30和0≤θ≤90°范围内,柱状晶体的精度为10(-6),球形晶体的精度为2.0 × 10(-6)。给出了两种情况下A*的二元Chebyshev多项式拟合公式。对球形晶体的最大拟合误差为6 × 10(-3),平均误差为7 × 10(-5) ~ 3 × 10(-4)。所有重要的表格和拟合程序都在补充资料中提供。
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引用次数: 3
Orthorhombic sphere packings. IV. Trivariant lattice complexes of space groups without mirror planes belonging to crystal class mmm. 正交球填料。属于晶体类mmm的无镜像面空间群的三变晶格配合物。
IF 1.8 4区 材料科学 Pub Date : 2012-11-01 Epub Date: 2012-10-18 DOI: 10.1107/S010876731203615X
Heidrun Sowa

All homogeneous sphere packings and all interpenetrating layers of spheres were derived that can be realized in the ten orthorhombic trivariant lattice complexes belonging to the space groups of crystal class mmm without mirror symmetry. Altogether, sphere packings of 186 different types have been found; the maximal inherent symmetry is orthorhombic for 124 of these types. In addition, ten types of interpenetrating sphere packings were detected, and in three lattice complexes interpenetrating 6(3) nets occur.

导出了在属于非镜像对称晶体类空间群的10个正交三变晶格配合物中可以实现的所有均匀球体填料和所有球体互穿层。总共发现了186种不同类型的球体填料;其中124种类型的最大固有对称是正交的。此外,还发现了10种互穿球形填料,在3种晶格配合物中存在互穿6(3)网。
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引用次数: 5
Fifty years of aperiodic crystals. 五十年的非周期晶体。
IF 1.8 4区 材料科学 Pub Date : 2012-11-01 Epub Date: 2012-09-18 DOI: 10.1107/S0108767312033715
T Janssen

Historians often have debates about the beginning and end of a certain era. The same discussion can be had about the history of aperiodic crystals. There are reasons to claim that in 2012 one may celebrate the 50th anniversary of this field. A short description is given of the development of this branch of crystallography. It is argued that the most important point in its history is the discovery of quasicrystals, which has been recognized by awarding the Nobel Prize in Chemistry 2011 to Dan Shechtman.

历史学家经常对某个时代的开始和结束进行争论。关于非周期晶体的历史也可以进行同样的讨论。我们有理由认为,2012年可能会庆祝这一领域成立50周年。本文对晶体学的这一分支的发展作了简要的描述。有人认为,准晶体的发现是其历史上最重要的一点,这一点已被授予2011年诺贝尔化学奖给丹·谢赫特曼。
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引用次数: 13
Experimental determination of spin-dependent electron density by joint refinement of X-ray and polarized neutron diffraction data. 用x射线和偏振中子衍射数据联合精化实验测定自旋相关电子密度。
IF 1.8 4区 材料科学 Pub Date : 2012-11-01 Epub Date: 2012-09-18 DOI: 10.1107/S0108767312031996
Maxime Deutsch, Nicolas Claiser, Sébastien Pillet, Yurii Chumakov, Pierre Becker, Jean Michel Gillet, Béatrice Gillon, Claude Lecomte, Mohamed Souhassou

New crystallographic tools were developed to access a more precise description of the spin-dependent electron density of magnetic crystals. The method combines experimental information coming from high-resolution X-ray diffraction (XRD) and polarized neutron diffraction (PND) in a unified model. A new algorithm that allows for a simultaneous refinement of the charge- and spin-density parameters against XRD and PND data is described. The resulting software MOLLYNX is based on the well known Hansen-Coppens multipolar model, and makes it possible to differentiate the electron spins. This algorithm is validated and demonstrated with a molecular crystal formed by a bimetallic chain, MnCu(pba)(H(2)O)(3)·2H(2)O, for which XRD and PND data are available. The joint refinement provides a more detailed description of the spin density than the refinement from PND data alone.

开发了新的晶体学工具,以便更精确地描述磁性晶体的自旋相关电子密度。该方法将高分辨率x射线衍射(XRD)和偏振中子衍射(PND)的实验信息结合在一个统一的模型中。描述了一种新的算法,可以根据XRD和PND数据同时改进电荷和自旋密度参数。由此产生的软件MOLLYNX是基于众所周知的Hansen-Coppens多极模型,并使区分电子自旋成为可能。用双金属链形成的分子晶体MnCu(pba)(H(2)O)(3)·2H(2)O验证了该算法,并获得了XRD和PND数据。联合精化提供了一个更详细的描述自旋密度比精化从PND数据单独。
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引用次数: 33
期刊
Acta Crystallographica Section A
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