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Peptidoglycan induces CXCL10 production and inhibits esophageal squamous cell carcinoma proliferation. 肽聚糖诱导CXCL10生成并抑制食管鳞状细胞癌增殖。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-12-15 eCollection Date: 2024-01-01 DOI: 10.62347/NHPV3701
Yoshihiro Sasaki, Yusuke Sato, Kyoko Nomura, Akiyuki Wakita, Yushi Nagaki, Ryohei Sasamori, Takatoshi Yoneya, Tsukasa Takahashi, Munehiro Yamada, Mayu Takahashi, Kaori Terata, Kazuhiro Imai

Poor oral health is an independent risk factor for upper-aerodigestive tract cancers, including esophageal squamous cell carcinoma (ESCC); thus, good oral health may reduce the risk of ESCC. We previously reported that high expression of Toll-like receptor (TLR) 6, which recognizes peptidoglycan (PGN) from Gram-positive bacteria correlates with a good prognosis after esophagectomy for ESCC. Most beneficial bacteria in the mouth are Gram-positive. We therefore hypothesized that PGN affects cancer cell proliferation and disease progression in ESCC. To test that idea, we assessed the expression of cytokine and chemokine mRNA and protein in eight ESCC cell lines. We also employed a mouse xenograft model to investigate the effect of PGN on ESCC tumor progression in vivo. We then investigated the relationship between the combined expression profiles of TLR6 and C-X-C motif chemokine ligand 10 (CXCL10) in clinical samples and 5-year overall survival (OS) and disease-specific survival (DSS) in ESCC patients after curative esophagectomy. We found that PGN significantly inhibited cell proliferation in six of eight ESCC lines and upregulated CXCL10 production via NF-κB2. In vivo, subcutaneous PGN administration tended to decrease ESCC tumor volume in mice. Combined high expression of TLR6 and CXCL10 correlated with a better prognosis in ESCC patients. This suggests that PGN reduces cell proliferation and tumor progression through a PGN-TLR-CXCL10 cascade, thereby influencing prognosis after esophagectomy for ESCC, and that improving the oral environment could potentially improve the prognosis of ESCC patients after esophagectomy.

口腔健康状况不佳是包括食管鳞状细胞癌(ESCC)在内的上呼吸道消化道癌症的独立危险因素;因此,良好的口腔健康可以降低ESCC的风险。我们之前报道了toll样受体(TLR) 6的高表达与ESCC食管切除术后良好的预后相关,TLR 6可识别来自革兰氏阳性细菌的肽聚糖(PGN)。口腔中大多数有益细菌都是革兰氏阳性。因此,我们假设PGN影响ESCC的癌细胞增殖和疾病进展。为了验证这一观点,我们评估了8种ESCC细胞系中细胞因子和趋化因子mRNA和蛋白的表达。我们还采用小鼠异种移植模型来研究PGN在体内对ESCC肿瘤进展的影响。然后,我们研究了临床样本中TLR6和C-X-C基序趋化因子配体10 (CXCL10)的联合表达谱与ESCC患者治愈性食管切除术后5年总生存率(OS)和疾病特异性生存率(DSS)之间的关系。我们发现PGN显著抑制8种ESCC细胞系中的6种细胞增殖,并通过NF-κB2上调CXCL10的产生。在体内,皮下给药PGN倾向于减少小鼠ESCC肿瘤体积。TLR6和CXCL10联合高表达与ESCC患者更好的预后相关。提示PGN通过PGN- tlr - cxcl10级联抑制细胞增殖和肿瘤进展,从而影响ESCC食管切除术后预后,改善口腔环境可能改善食管切除术后ESCC患者的预后。
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引用次数: 0
Outcomes of upfront primary tumor resection in patients with synchronous RAS wild-type metastatic colorectal cancer. 同步RAS野生型转移性结直肠癌患者早期原发肿瘤切除的结果。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-12-15 eCollection Date: 2024-01-01 DOI: 10.62347/DLWI1455
Po-Jung Chen, Chou-Chen Chen, Shih-Ching Chang, Yu-Yao Chang, Bo-Wen Lin, Hong-Hwa Chen, Yao-Yu Hsieh, Hung-Chih Hsu, Meng-Che Hsieh, Tao-Wei Ke, Feng-Che Kuan, Chih-Chien Wu, Wei-Chen Lu, Yu-Li Su, Yi-Hsin Liang, Joe-Bin Chen, Shuan-Yuan Huang, Ching-Wen Huang, Jaw-Yuan Wang

This multicenter study explored the survival benefits of upfront primary tumor resection (PTR) followed by first-line cetuximab plus chemotherapy in real-world patients with RAS wild-type metastatic colorectal cancer (mCRC). Treatment options for mCRC include chemotherapy, targeted therapy, immunotherapy, and surgery. The efficacy of upfront PTR in managing mCRC remains unclear. In this retrospective study, we evaluated the outcomes of upfront PTR in 582 patients with synchronous RAS wild-type mCRC who received cetuximab plus chemotherapy as first-line treatment between November 2016 and August 2020. Of these patients, 364 (62.5%) underwent upfront PTR (PTR group) and 218 (37.5%) did not (non-PTR group). Relevant data were collected from 14 medical institutions in Taiwan. No significant differences were discovered between the PTR and non-PTR groups in median overall survival (37.9 vs. 31.7 months; P = 0.079) or progression-free survival (13.70 vs. 13.29 months; P = 0.62). Compared with patients who did not undergo metastasectomy, those who underwent this surgery exhibited significantly longer median overall survival (29.2 vs. 54.18 months; P < 0.001) and progression-free survival (12.8 vs. 15.60 months; P = 0.013). Our findings suggest that upfront PTR may not improve oncological outcomes in patients with synchronous RAS wild-type mCRC. Cetuximab-based targeted therapy plus chemotherapy appears to be suitable as first-line treatment for these patients. This study indicates that upfront PTR should be considered only for patients exhibiting symptoms such as tumor bleeding, perforation, or obstruction.

这项多中心研究探讨了现实世界中RAS野生型转移性结直肠癌(mCRC)患者的前期原发肿瘤切除(PTR)后一线西妥昔单抗加化疗的生存益处。mCRC的治疗选择包括化疗、靶向治疗、免疫治疗和手术。前期PTR治疗mCRC的疗效尚不清楚。在这项回顾性研究中,我们评估了582例同步RAS野生型mCRC患者的前期PTR结果,这些患者在2016年11月至2020年8月期间接受了西妥昔单抗加化疗作为一线治疗。其中364例(62.5%)患者接受了前期PTR (PTR组),218例(37.5%)患者未接受PTR(非PTR组)。相关数据来自台湾14家医疗机构。PTR组和非PTR组的中位总生存期无显著差异(37.9个月vs 31.7个月;P = 0.079)或无进展生存期(13.70个月vs 13.29个月;P = 0.62)。与未行转移瘤切除术的患者相比,行转移瘤切除术的患者的中位总生存期明显延长(29.2个月vs 54.18个月;P < 0.001)和无进展生存期(12.8 vs 15.60个月;P = 0.013)。我们的研究结果表明,在同步RAS野生型mCRC患者中,前期PTR可能不会改善肿瘤预后。以西妥昔单抗为基础的靶向治疗加化疗似乎适合作为这些患者的一线治疗。本研究表明,只有出现肿瘤出血、穿孔或梗阻等症状的患者才应考虑进行前期PTR。
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引用次数: 0
LncRNA SLC16A1-AS1 participates in the initiation and progression of colorectal cancer by regulating MAP3K9 expression through targeting miR-515-5p. LncRNA SLC16A1-AS1通过靶向miR-515-5p调控MAP3K9表达参与结直肠癌的发生和进展。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-25 eCollection Date: 2024-01-01 DOI: 10.62347/ABOI7514
Wanxing Xu, Suzhen Bi, Meichun Xing

Objective: To investigate the role of long non-coding RNA (lncRNA) SLC16A1-AS1 in the initiation and progression of colorectal cancer (CRC).

Methods: Cell viability was tested using Cell Counting Kit-8 (CCK-8). Cell invasion and migration were evaluated using Transwell assays, and apoptosis was determined by flow cytometry. Gene expression was tested by qRT-PCR or Western blot. The targeting relationship between miR-515-5p and MAP3K9 was verified using bioinformatics tools, RNA immunoprecipitation (RIP) experiments, and dual-luciferase reporter assays.

Results: Both lncRNA SLC16A1-AS1 and MAP3K9 were upregulated in CRC cells, while miR-515-5p expression was downregulated. Overexpression of miR-515-5p and silencing of lncRNA SLC16A1-AS1 inhibited CRC cell proliferation, suppressed cell invasion and migration, and promoted cell apoptosis. The targeting relationship between lncRNA SLC16A1-AS1 and miR-515-5p, as well as between MAP3K9 and miR-515-5p, were confirmed by bioinformatics, RIP assays, and luciferase reporter assays.

Conclusion: lncRNA SLC16A1-AS1 contributes to the initiation and progression of CRC by modulating miR-515-5p to regulate MAP3K9 expression, providing potential insights for CRC treatment.

目的:探讨长链非编码RNA (lncRNA) SLC16A1-AS1在结直肠癌(CRC)发生发展中的作用。方法:采用细胞计数试剂盒-8 (CCK-8)检测细胞活力。Transwell法检测细胞侵袭和迁移,流式细胞术检测细胞凋亡。采用qRT-PCR或Western blot检测基因表达。通过生物信息学工具、RNA免疫沉淀(RIP)实验和双荧光素酶报告基因测定验证了miR-515-5p与MAP3K9之间的靶向关系。结果:lncRNA SLC16A1-AS1和MAP3K9在结直肠癌细胞中表达上调,miR-515-5p表达下调。过表达miR-515-5p和沉默lncRNA SLC16A1-AS1可抑制结直肠癌细胞增殖,抑制细胞侵袭迁移,促进细胞凋亡。lncRNA SLC16A1-AS1与miR-515-5p之间的靶向关系,以及MAP3K9与miR-515-5p之间的靶向关系,已通过生物信息学、RIP测定和荧光素酶报告基因测定证实。结论:lncRNA SLC16A1-AS1通过调节miR-515-5p调控MAP3K9表达参与CRC的发生和进展,为CRC的治疗提供了潜在的见解。
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引用次数: 0
Associations of plasma extracellular microRNAs with new-onset breast cancer in the Framingham heart study. Framingham心脏研究中血浆细胞外小rna与新发乳腺癌的关系
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-25 eCollection Date: 2024-01-01 DOI: 10.62347/KMFI7371
Hannah Karlin, Martin Larson, Jian Rong, Tianxiao Huan, Paul Courchesne, Jane E Freedman, Jennifer E Ho, Kahraman Tanriverdi, Gregory P Mueller, Daniel Levy

Breast cancer is the second leading cause of cancer deaths among women. Multiple microRNAs (miRNAs) have been reported to be associated with breast cancer progression or metastasis. The purpose of the current study was to identify plasma extracellular miRNAs associated with incident breast cancer. Levels of 166 plasma miRNA were measured using qRT-PCR in 2140 Framingham Heart Study female participants with a median follow up of 15.7 years. Prospective analyses of the associations of miRNAs with the occurrence of 56 new-onset breast cancer events were conducted using proportional hazards regression. The expression levels miR-134-5p (P=0.002) and miR-505-3p (P=0.005) were found to be positively associated with incident breast cancer after adjusting for age, body mass index, and cigarette smoking. These results highlight plasma miRNAs as potential biomarkers of breast cancer risk. Validation of these findings in larger and more diverse cohorts is warranted.

乳腺癌是妇女癌症死亡的第二大原因。据报道,多种microRNAs (miRNAs)与乳腺癌的进展或转移有关。当前研究的目的是确定与乳腺癌发病率相关的血浆细胞外mirna。在中位随访15.7年的2140名Framingham心脏研究女性参与者中,使用qRT-PCR测量了166种血浆miRNA的水平。采用比例风险回归对mirna与56例新发乳腺癌事件的关联进行前瞻性分析。在调整年龄、体重指数、吸烟等因素后,发现miR-134-5p (P=0.002)和miR-505-3p (P=0.005)的表达水平与乳腺癌发病率呈正相关。这些结果强调血浆mirna是乳腺癌风险的潜在生物标志物。有必要在更大、更多样化的队列中验证这些发现。
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引用次数: 0
Cellular MSI-H score: a robust predictive biomarker for immunotherapy response and survival in gastrointestinal cancer. 细胞MSI-H评分:胃肠道癌症免疫治疗反应和生存的一个强大的预测性生物标志物。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-25 eCollection Date: 2024-01-01 DOI: 10.62347/AIWP6518
Feilong Zhao, Shu Wang, Yuezong Bai, Jinping Cai, Yuhao Wang, Yuxuan Ma, Haoyuan Wang, Yan Zhao, Juan Wang, Cheng Zhang, Jing Gao, Jianjun Yang

Microsatellite instability-high (MSI-H) is a critical biomarker for immunotherapy, yet primary resistance remains a significant challenge. Current MSI-H detection methods evaluate the proportion of MSI-H loci, termed molecular MSI-H score, which can be affected by intratumoral heterogeneity (ITH). To address this limitation, we propose evaluating MSI-H at the cellular level to improve the prediction of immunotherapy outcomes. Using bulk tissue (TCGA-CRC) and cell line (CCLE-CRC) datasets, we identified genes highly expressed in MSI-H and MSS samples. These signatures were applied to a single-cell RNA sequencing (scCRC) dataset for enrichment analysis, enabling classification of tumor cells into MSI-H, MSS, and microsatellite dual (MSD) clusters using a Gaussian finite mixture model. Validation showed that MSI-H and MSS enrichment scores were higher in mismatch repair-deficient (MMRd) and mismatch repair-proficient (MMRp) patients, respectively. Functional enrichment analysis revealed that MSI-H cells were associated with pathways such as carboxylic acid catabolism, inflammatory responses, and IL-6/JAK2/STAT3 signaling. We developed a cellular MSI-H signature using genes specifically expressed in the MSI-H cell cluster and transformed the scCRC dataset into a cell-type-specific pseudobulk expression matrix. Using this matrix as a reference, we performed reference-based deconvolution on TCGA-CRC data. We defined the deconvolution score of MSI-H cell as cellular MSI-H score. This score strongly correlated with the molecular MSI-H score (R = 0.55, P < 0.001) and showed modest correlations with macrophage (MoMac, R = 0.14) and CD8+ T-cell (R = 0.11). To investigate its potential for clinical application, we applied the cellular MSI-H signature to the BJ-cohort, comprising 97 immunotherapy-treated gastrointestinal patients sequenced with a 395-gene panel. The cellular MSI-H score was significantly higher in responders (P = 0.002), positively correlated with tumor reduction percentage (R = 0.29, P = 0.006), and associated with improved progression-free survival (PFS) (HR: 0.00, 95% CI: 0.00-0.31, P = 0.021). In summary, the cellular MSI-H score reflects the MSI-H cell level within a tumor and demonstrates superior accuracy compared to molecular MSI-H status in predicting immunotherapy response and PFS. This underscores its potential as a more robust biomarker for guiding immunotherapy decisions.

微卫星不稳定性高(MSI-H)是免疫治疗的关键生物标志物,但原发性耐药仍然是一个重大挑战。目前的MSI-H检测方法评估MSI-H位点的比例,称为分子MSI-H评分,可受肿瘤内异质性(ITH)的影响。为了解决这一局限性,我们建议在细胞水平上评估MSI-H,以改善免疫治疗结果的预测。利用大块组织(TCGA-CRC)和细胞系(CCLE-CRC)数据集,我们确定了MSI-H和MSS样品中高表达的基因。这些特征被应用于单细胞RNA测序(scCRC)数据集进行富集分析,使用高斯有限混合模型将肿瘤细胞分类为MSI-H, MSS和微卫星双(MSD)簇。验证表明,错配修复缺陷(MMRd)和错配修复熟练(MMRp)患者的MSI-H和MSS富集得分分别较高。功能富集分析显示,MSI-H细胞与羧酸分解代谢、炎症反应和IL-6/JAK2/STAT3信号通路相关。我们利用MSI-H细胞簇中特异性表达的基因开发了细胞MSI-H特征,并将scCRC数据集转化为细胞类型特异性伪体表达矩阵。以该矩阵为参考,我们对TCGA-CRC数据进行了基于参考的反卷积。我们将MSI-H细胞的反卷积评分定义为细胞MSI-H评分。该评分与分子MSI-H评分呈正相关(R = 0.55, P < 0.001),与巨噬细胞(MoMac, R = 0.14)和CD8+ t细胞(R = 0.11)呈正相关。为了研究其临床应用潜力,我们将细胞MSI-H特征应用于bj队列,该队列包括97名接受免疫治疗的胃肠道患者,使用395个基因面板进行测序。应答者的细胞MSI-H评分显著较高(P = 0.002),与肿瘤减少百分比呈正相关(R = 0.29, P = 0.006),与改善的无进展生存期(PFS)相关(HR: 0.00, 95% CI: 0.00-0.31, P = 0.021)。总之,细胞MSI-H评分反映了肿瘤内的MSI-H细胞水平,与分子MSI-H状态相比,在预测免疫治疗反应和PFS方面表现出更高的准确性。这强调了它作为指导免疫治疗决策的更强大的生物标志物的潜力。
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引用次数: 0
Machine learning-based dynamic predictive models for prognosis and treatment decisions in patients with liver metastases from gastric cancer. 基于机器学习的胃癌肝转移患者预后和治疗决策动态预测模型。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-25 eCollection Date: 2024-01-01 DOI: 10.62347/MTBM7462
Zhiqiang Wang, Xingqing Jia, Yukun Yang, Ning Meng, Le Wang, Jie Zheng, Yuanqing Xu

Gastric cancer with liver metastasis (GCLM) often has a poor prognosis. Therefore, it is crucial to identify risk factors affecting their overall survival (OS) and cancer-specific survival (CSS). This study aimed to construct practical machine learning models to predict survival time and help clinicians choose appropriate treatments. We reviewed the clinical and survival data of GCLM patients from 2010 to 2017 in the Surveillance, Epidemiology, and End Results (SEER) databases and divided the patients into training and testing groups. The risk factors affecting OS and CSS were determined by least absolute shrinkage and selector operator (LASSO), univariate cox regression, best subset regression (BSR) and the stepwise backward regression. Then, five machine learning models, including random survival forest (RSF), Gradient Boosting Machine (GBM), the Cox proportional hazard (CPH), Survival Support Vector Machine (survivalSVM), and eXtreme Gradient Boosting (XGBoost), were built using the identified risk factors. The model with the best predictive ability was determined using concordance index (c-index), area under the curve (AUC), brier score, and decision curve analysis (DCA), and externally verified with data from 233 cases diagnosed with liver metastasis of cancer from The Shijiazhuang People's Hospital, Jinan City People's Hospital, and The Sixth People's Hospital of Huizhou from 2017 to 2018. The study involved a total of 1300 GCLM patients. The prognostic risk factors affecting OS and CSS were the same, including grade, histology, T stage, N stage, surgery, and chemotherapy. The XGBoost model was found to have the best predictive ability for OS, with AUC of 0.891 [95% CI 0.841-0.941], brier score of 0.061 [95% CI 0.046-0.076], and c-index of 0.752 [95% CI 0.742-0.761], as well as for CSS, with AUC of 0.895 [95% CI 0.848-0.942], brier score of 0.064 [95% CI 0.050-0.079], and c-index of 0.746 [95% CI 0.736-0.756]. The AUC score, brier score and c-index all illustrated the accuracy of the model, and the validation using the external datasets further confirmed the reliability of the model. Therefore, the XGBoost model demonstrated significant potential in predicting survival times and selecting appropriate treatment plans.

胃癌伴肝转移(GCLM)往往预后较差。因此,确定影响其总生存期(OS)和癌症特异性生存期(CSS)的危险因素至关重要。本研究旨在构建实用的机器学习模型来预测生存时间,并帮助临床医生选择合适的治疗方法。我们回顾了监测、流行病学和最终结果(SEER)数据库中2010年至2017年GCLM患者的临床和生存数据,并将患者分为训练组和试验组。通过最小绝对收缩和选择算子(LASSO)、单变量cox回归、最佳子集回归(BSR)和逐步回归确定影响OS和CSS的危险因素。然后,利用识别出的风险因素,构建随机生存森林(RSF)、梯度增强机(GBM)、Cox比例风险(CPH)、生存支持向量机(survivalSVM)和极端梯度增强(XGBoost) 5个机器学习模型。采用一致性指数(c-index)、曲线下面积(AUC)、brier评分和决策曲线分析(DCA)确定预测能力最佳的模型,并采用石家庄市人民医院、济南市人民医院和惠州市第六人民医院2017 - 2018年诊断为肝癌肝转移的233例数据进行外部验证。这项研究共涉及1300名GCLM患者。影响OS和CSS的预后危险因素相同,包括分级、组织学、T期、N期、手术和化疗。XGBoost模型对OS的预测能力最好,AUC为0.891 [95% CI 0.841-0.941], brier评分为0.061 [95% CI 0.046-0.076], c-index为0.752 [95% CI 0.742-0.761];对CSS的预测能力最好,AUC为0.895 [95% CI 0.848-0.942], brier评分为0.064 [95% CI 0.050-0.079], c-index为0.746 [95% CI 0.736-0.756]。AUC评分、brier评分和c-index都说明了模型的准确性,使用外部数据集的验证进一步证实了模型的可靠性。因此,XGBoost模型在预测生存时间和选择合适的治疗方案方面显示出巨大的潜力。
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引用次数: 0
NCAPG-mediated CDK1 promotes malignant progression of non-small cell lung cancer via ERK signaling activation. ncapg介导的CDK1通过ERK信号激活促进非小细胞肺癌的恶性进展。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-15 eCollection Date: 2024-01-01 DOI: 10.62347/DNAQ7105
Yilin Wu, Ming Yang, Ming Chen, Lan Tian, Yong Zhu, Limin Chen

Non-SMC condensing I complex subunit G (NCAPG) has been implicated in tumor progression. However, its role, potential mechanism and prognostic significance in human non-small cell lung cancer (NSCLC) remain elusive. Through the conjoint analysis of the TCGA and The Gene Expression Omnibus (GEO) databases, we confirmed that NCAPG is an upregulated gene. The prognostic value of NCAPG was elucidated through data analysis. The functional roles and mechanistic insights of NCAPG in NSCLC growth and metastasis were evaluated in vitro and in vivo. NCAPG expression was significantly increased in NSCLC. Multivariate Cox regression analysis demonstrated that NCAPG was an independent prognostic factor in patients with NSCLC. The high expression of NCAPG was significantly correlated with lymphatic metastasis. Additionally, the high expression of NCAPG effectively promoted the growth and metastasis of NSCLC in vitro and in vivo. In terms of mechanism, the interaction between NCAPG and Cyclin-dependent kinase 1 (CDK1) promotes the phosphorylation of Extracellular signal-regulated kinase (ERK). Overall, our results reveal the key role of NCAPG in NSCLC and highlight the regulatory function of the NCAPG/CDK1/ERK axis in regulating the progression of NSCLC, providing potential prognosis and therapeutic targets for the treatment of NSCLC.

非smc凝聚I复合体亚基G (NCAPG)与肿瘤进展有关。然而,其在人非小细胞肺癌(NSCLC)中的作用、潜在机制和预后意义尚不明确。通过TCGA和the Gene Expression Omnibus (GEO)数据库的联合分析,我们证实NCAPG是一个上调基因。通过数据分析阐明NCAPG的预后价值。在体外和体内研究了NCAPG在非小细胞肺癌生长和转移中的功能作用和机制。NCAPG在NSCLC中的表达显著升高。多因素Cox回归分析显示,NCAPG是NSCLC患者的独立预后因素。NCAPG的高表达与淋巴转移有显著相关性。此外,NCAPG的高表达在体外和体内均能有效促进NSCLC的生长和转移。在机制上,NCAPG与细胞周期蛋白依赖性激酶1 (Cyclin-dependent kinase 1, CDK1)相互作用促进细胞外信号调节激酶(Extracellular signal-regulated kinase, ERK)磷酸化。总之,我们的研究结果揭示了NCAPG在NSCLC中的关键作用,突出了NCAPG/CDK1/ERK轴在调节NSCLC进展中的调控作用,为NSCLC的治疗提供了潜在的预后和治疗靶点。
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引用次数: 0
Risk factors for postoperative pulmonary infections in non-small cell lung cancer: a regression-based nomogram prediction model. 非小细胞肺癌术后肺部感染的危险因素:基于回归的nomogram预测模型
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-15 eCollection Date: 2024-01-01 DOI: 10.62347/BIBD8425
Chao Zhang, Yongxing Fu, Qiangjun Chen, Ruofan Liu

Objective: To identify key risk factors for postoperative pulmonary infections (PPIs) in lung cancer (LC), patients undergoing radical surgery and construct a multiparametric nomogram model to improve PPI risk prediction accuracy, guiding individualized interventions.

Methods: A retrospective analysis was conducted on LC patients treated at Yidu Central Hospital of Weifang from March 2020 to May 2023. Among the 1,084 LC cases reviewed, patients were divided into an infected group (n = 131) and an uninfected group (n = 953) based on infection status. Key factors for PPIs were screened using machine learning techniques, including least absolute shrinkage and selection operator (LASSO) regression, Support Vector Machine (SVM), and Extreme Gradient Boosting (XGBoost). A nomogram prediction model was developed, and its stability and clinical utility were evaluated using calibration curves and decision curve analysis, with internal validation through random case selection.

Results: Thirteen factors - including tumor stage, diabetes history, chronic obstructive pulmonary disease (COPD), operation duration, mechanical ventilation duration, age, C-reactive protein, procalcitonin, high-mobility group box 1, interleukin-6, neutrophil-to-lymphocyte ratio, platelet-to-lymphocyte ratio, and systemic immune-inflammation index - were identified as significantly associated with PPIs. The nomogram model demonstrated high predictive accuracy in internal validation (C-index = 0.935), strong calibration, and substantial clinical benefit. For two randomly selected cases, the model predicted a 63% infection probability for the infected patient and a 32% probability for the uninfected patient, affirming the model's predictive effectiveness.

Conclusions: The multiparametric nomogram model developed in this study provides a reliable method for PPI risk prediction in LC patients, supporting clinical decision-making and improving postoperative management.

目的:识别肺癌(LC)根治性手术患者术后肺部感染(PPIs)的关键危险因素,构建多参数nomogram模型,提高PPI风险预测准确率,指导个体化干预。方法:回顾性分析潍坊市宜都中心医院2020年3月至2023年5月收治的LC患者。在1084例LC病例中,根据感染情况将患者分为感染组(n = 131)和未感染组(n = 953)。使用机器学习技术筛选ppi的关键因素,包括最小绝对收缩和选择算子(LASSO)回归、支持向量机(SVM)和极端梯度增强(XGBoost)。建立了nomogram预测模型,通过校准曲线和决策曲线分析对模型的稳定性和临床应用进行了评价,并通过随机病例选择进行了内部验证。结果:肿瘤分期、糖尿病史、慢性阻塞性肺疾病(COPD)、手术时间、机械通气时间、年龄、c反应蛋白、降钙素原、高迁移率组1、白细胞介素-6、中性粒细胞与淋巴细胞比值、血小板与淋巴细胞比值、全身免疫炎症指数等13个因素与PPIs有显著相关性。nomogram模型在内部验证中具有较高的预测准确度(C-index = 0.935)、较强的校准性和可观的临床效益。对于随机选择的两个病例,该模型预测感染患者的感染概率为63%,未感染患者的感染概率为32%,证实了该模型的预测有效性。结论:本研究建立的多参数nomogram模型为LC患者PPI风险预测提供了可靠的方法,可支持临床决策,改善术后管理。
{"title":"Risk factors for postoperative pulmonary infections in non-small cell lung cancer: a regression-based nomogram prediction model.","authors":"Chao Zhang, Yongxing Fu, Qiangjun Chen, Ruofan Liu","doi":"10.62347/BIBD8425","DOIUrl":"10.62347/BIBD8425","url":null,"abstract":"<p><strong>Objective: </strong>To identify key risk factors for postoperative pulmonary infections (PPIs) in lung cancer (LC), patients undergoing radical surgery and construct a multiparametric nomogram model to improve PPI risk prediction accuracy, guiding individualized interventions.</p><p><strong>Methods: </strong>A retrospective analysis was conducted on LC patients treated at Yidu Central Hospital of Weifang from March 2020 to May 2023. Among the 1,084 LC cases reviewed, patients were divided into an infected group (n = 131) and an uninfected group (n = 953) based on infection status. Key factors for PPIs were screened using machine learning techniques, including least absolute shrinkage and selection operator (LASSO) regression, Support Vector Machine (SVM), and Extreme Gradient Boosting (XGBoost). A nomogram prediction model was developed, and its stability and clinical utility were evaluated using calibration curves and decision curve analysis, with internal validation through random case selection.</p><p><strong>Results: </strong>Thirteen factors - including tumor stage, diabetes history, chronic obstructive pulmonary disease (COPD), operation duration, mechanical ventilation duration, age, C-reactive protein, procalcitonin, high-mobility group box 1, interleukin-6, neutrophil-to-lymphocyte ratio, platelet-to-lymphocyte ratio, and systemic immune-inflammation index - were identified as significantly associated with PPIs. The nomogram model demonstrated high predictive accuracy in internal validation (C-index = 0.935), strong calibration, and substantial clinical benefit. For two randomly selected cases, the model predicted a 63% infection probability for the infected patient and a 32% probability for the uninfected patient, affirming the model's predictive effectiveness.</p><p><strong>Conclusions: </strong>The multiparametric nomogram model developed in this study provides a reliable method for PPI risk prediction in LC patients, supporting clinical decision-making and improving postoperative management.</p>","PeriodicalId":7437,"journal":{"name":"American journal of cancer research","volume":"14 11","pages":"5365-5377"},"PeriodicalIF":3.6,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11626275/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142805858","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bioinformatics- and quantitative proteomics-based identification of gastric adenocarcinoma-related proteins and analysis. 基于生物信息学和定量蛋白质组学的胃腺癌相关蛋白的鉴定和分析。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-15 eCollection Date: 2024-01-01 DOI: 10.62347/BVFO4627
Wenbo Liu, Yong Li, Liqiao Fan, Mingming Zhang, Xiaohan Zhao, Yanru Song, Bingjie Huo, Bingyu Wang, Yingying Wang, Chao Song, Buyun Song, Bibo Tan

Background: The emergence of immune resistance and a lack of effective therapeutic targets have become significant challenges in immunotherapy, highlighting the urgent need for new molecular markers and treatment targets. Moreover, the significance and mechanisms of PGRN (Progranulin) in gastric cancer remain ambiguous.

Objective: To identify differentially expressed proteins in gastric cancer and elucidate the function and mechanism of PGRN.

Methods: The data-independent acquisition proteomics was used to identify the differentially expressed proteins in gastric adenocarcinoma and the corresponding paraneoplastic tissues, providing a comprehensive dataset of gastric cancer-related proteins. The function and mechanism of PGRN in gastric cancer were further explored using a series of experiments, including RT-qPCR (Real Time-Quantitative Polymerase Chain Reaction), cell transfection, cell viability assays, cell scratch, immunohistochemistry and Transwell assays, Western blot, and a mouse tumor-bearing model. These investigations were combined with bioinformatics analyses to examine the relationship between PGRN expression and clinical-pathological characteristics, confirming its high expression of PGRN in gastric cancer tissues.

Results: We identified a large number of differentially expressed proteins between gastric cancer and adjacent tissues and conducted an initial functional analysis. Further studies on PGRN showed that it was associated with gastric cancer prognosis and lymph node metastasis. The inhibition of PGRN expression led to reduced cell viability, migration, and invasion, with corresponding changes in related genes and proteins. In a mouse tumor-bearing model, the tumor growth of the subcutaneously transplanted tumors in nude mice was reduced after the inhibition of PGRN expression. An in-depth functional analysis of PGRN was performed using bioinformatics to predict protein interactions, miRNA regulation, and relationships with multiple immune cell types. Enrichment analysis indicated that PGRN is involved in multiple signaling pathways, with the MAPK (Mitogen-Activated Protein Kinase) pathway selected for validation. In AGS and HGC27 cells, PGRN inhibition led to increased expression of phosphorylated p38 (p-p38) in the MAPK pathway, suggesting that PGRN may promote gastric cancer development by regulating p-p38.

Conclusions: This study identified significant differences in protein expression between gastric adenocarcinoma and adjacent tissues, with PGRN emerging as a key protein influencing gastric cancer proliferation, migration, and invasion. These findings suggest that PGRN could serve as a potential therapeutic target for gastric cancer.

背景:免疫耐药的出现和缺乏有效的治疗靶点已成为免疫治疗面临的重大挑战,迫切需要新的分子标记和治疗靶点。此外,PGRN (Progranulin)在胃癌中的意义和机制尚不清楚。目的:鉴定胃癌组织中差异表达蛋白,阐明PGRN的功能和作用机制。方法:采用数据独立获取蛋白质组学技术,鉴定胃腺癌及相应的副癌组织中差异表达的蛋白,提供全面的胃癌相关蛋白数据集。通过RT-qPCR (Real - Time-Quantitative Polymerase Chain Reaction,实时定量聚合酶链反应)、细胞转染、细胞活力测定、细胞划痕、免疫组化、Transwell检测、Western blot及小鼠荷瘤模型等实验,进一步探讨PGRN在胃癌中的作用及机制。这些研究结合生物信息学分析来检验PGRN表达与临床病理特征的关系,证实PGRN在胃癌组织中高表达。结果:我们发现了大量胃癌与癌旁组织之间的差异表达蛋白,并进行了初步的功能分析。进一步研究发现PGRN与胃癌预后及淋巴结转移有关。抑制PGRN表达导致细胞活力、迁移和侵袭能力降低,相关基因和蛋白发生相应变化。在小鼠荷瘤模型中,抑制PGRN表达后,裸鼠皮下移植瘤的肿瘤生长受到抑制。利用生物信息学对PGRN进行了深入的功能分析,以预测蛋白质相互作用、miRNA调节以及与多种免疫细胞类型的关系。富集分析表明,PGRN参与多种信号通路,选择MAPK(丝裂原活化蛋白激酶)通路进行验证。在AGS和HGC27细胞中,PGRN抑制导致MAPK通路磷酸化p38 (p-p38)的表达增加,提示PGRN可能通过调节p-p38促进胃癌的发展。结论:本研究发现胃腺癌与癌旁组织的蛋白表达存在显著差异,PGRN是影响胃癌增殖、迁移和侵袭的关键蛋白。这些发现提示PGRN可作为胃癌的潜在治疗靶点。
{"title":"Bioinformatics- and quantitative proteomics-based identification of gastric adenocarcinoma-related proteins and analysis.","authors":"Wenbo Liu, Yong Li, Liqiao Fan, Mingming Zhang, Xiaohan Zhao, Yanru Song, Bingjie Huo, Bingyu Wang, Yingying Wang, Chao Song, Buyun Song, Bibo Tan","doi":"10.62347/BVFO4627","DOIUrl":"10.62347/BVFO4627","url":null,"abstract":"<p><strong>Background: </strong>The emergence of immune resistance and a lack of effective therapeutic targets have become significant challenges in immunotherapy, highlighting the urgent need for new molecular markers and treatment targets. Moreover, the significance and mechanisms of PGRN (Progranulin) in gastric cancer remain ambiguous.</p><p><strong>Objective: </strong>To identify differentially expressed proteins in gastric cancer and elucidate the function and mechanism of PGRN.</p><p><strong>Methods: </strong>The data-independent acquisition proteomics was used to identify the differentially expressed proteins in gastric adenocarcinoma and the corresponding paraneoplastic tissues, providing a comprehensive dataset of gastric cancer-related proteins. The function and mechanism of PGRN in gastric cancer were further explored using a series of experiments, including RT-qPCR (Real Time-Quantitative Polymerase Chain Reaction), cell transfection, cell viability assays, cell scratch, immunohistochemistry and Transwell assays, Western blot, and a mouse tumor-bearing model. These investigations were combined with bioinformatics analyses to examine the relationship between PGRN expression and clinical-pathological characteristics, confirming its high expression of PGRN in gastric cancer tissues.</p><p><strong>Results: </strong>We identified a large number of differentially expressed proteins between gastric cancer and adjacent tissues and conducted an initial functional analysis. Further studies on PGRN showed that it was associated with gastric cancer prognosis and lymph node metastasis. The inhibition of PGRN expression led to reduced cell viability, migration, and invasion, with corresponding changes in related genes and proteins. In a mouse tumor-bearing model, the tumor growth of the subcutaneously transplanted tumors in nude mice was reduced after the inhibition of PGRN expression. An in-depth functional analysis of PGRN was performed using bioinformatics to predict protein interactions, miRNA regulation, and relationships with multiple immune cell types. Enrichment analysis indicated that PGRN is involved in multiple signaling pathways, with the MAPK (Mitogen-Activated Protein Kinase) pathway selected for validation. In AGS and HGC27 cells, PGRN inhibition led to increased expression of phosphorylated p38 (p-p38) in the MAPK pathway, suggesting that PGRN may promote gastric cancer development by regulating p-p38.</p><p><strong>Conclusions: </strong>This study identified significant differences in protein expression between gastric adenocarcinoma and adjacent tissues, with PGRN emerging as a key protein influencing gastric cancer proliferation, migration, and invasion. These findings suggest that PGRN could serve as a potential therapeutic target for gastric cancer.</p>","PeriodicalId":7437,"journal":{"name":"American journal of cancer research","volume":"14 11","pages":"5286-5303"},"PeriodicalIF":3.6,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11626274/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142806013","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New findings on the effects of diabetes and anti-diabetic drugs on prostate cancer. 糖尿病及抗糖尿病药物对前列腺癌影响的新发现。
IF 3.6 3区 医学 Q2 ONCOLOGY Pub Date : 2024-11-15 eCollection Date: 2024-01-01 DOI: 10.62347/XHRV2759
Guk Jin Lee, Kyungdo Han, Seong-Su Lee

Although diabetes mellitus (DM) is known to be related to the risk of many cancers, there are few studies on the risk of prostate cancer (PC) depending on the status of hyperglycemia, such as prediabetes and DM. Thus, the objective of this study was to determine the effect of each status of hyperglycemia on the risk of PC. In a Korean National Health Insurance Service database cohort, a total of 560,413 individuals who were followed until 2018 were analyzed. The risk of PC in patients with impaired fasting glucose (IFG) and new onset DM as well as all DM was determined. Associations of metabolic syndrome (MetS) components with the risk of PC according to glycemic status were evaluated. The association of anti-diabetic drugs with the incidence of PC was also analyzed. The presence of new-onset and all DM showed a significant reduction of the risk of PC in adjusted models. There was a trend that the presence of DM reduced the risk of PC regardless of the presence of MetS components. Regarding associations of anti-diabetic drugs with the incidence of PC, DM patients who were taking less than three drugs of oral hypoglycemic agents including metformin showed a reduced risk of PC compared to patients without using metformin. This study supports an inverse relationship between DM and the risk of PC. However, the risk of PC can be different depending on glycemic status and sorts of anti-diabetic drugs.

虽然已知糖尿病(DM)与许多癌症的风险相关,但很少有研究表明前列腺癌(PC)的风险取决于高血糖状态,如前驱糖尿病和糖尿病。因此,本研究的目的是确定每种高血糖状态对PC风险的影响。在韩国国民健康保险公团数据库队列中,共有560,413人被跟踪到2018年。测定空腹血糖受损(IFG)、新发糖尿病以及所有糖尿病患者发生PC的风险。根据血糖状态评估代谢综合征(MetS)成分与PC风险的关系。并分析了抗糖尿病药物与PC发病率的关系。在调整后的模型中,新发糖尿病和所有糖尿病的存在显著降低了PC的风险。有一种趋势是,无论是否存在MetS成分,DM的存在都会降低PC的风险。关于抗糖尿病药物与PC发病率的关系,服用少于三种口服降糖药(包括二甲双胍)的DM患者与未使用二甲双胍的患者相比,发生PC的风险降低。本研究支持糖尿病与PC风险呈负相关。然而,根据血糖状态和抗糖尿病药物的种类不同,患PC的风险也不同。
{"title":"New findings on the effects of diabetes and anti-diabetic drugs on prostate cancer.","authors":"Guk Jin Lee, Kyungdo Han, Seong-Su Lee","doi":"10.62347/XHRV2759","DOIUrl":"10.62347/XHRV2759","url":null,"abstract":"<p><p>Although diabetes mellitus (DM) is known to be related to the risk of many cancers, there are few studies on the risk of prostate cancer (PC) depending on the status of hyperglycemia, such as prediabetes and DM. Thus, the objective of this study was to determine the effect of each status of hyperglycemia on the risk of PC. In a Korean National Health Insurance Service database cohort, a total of 560,413 individuals who were followed until 2018 were analyzed. The risk of PC in patients with impaired fasting glucose (IFG) and new onset DM as well as all DM was determined. Associations of metabolic syndrome (MetS) components with the risk of PC according to glycemic status were evaluated. The association of anti-diabetic drugs with the incidence of PC was also analyzed. The presence of new-onset and all DM showed a significant reduction of the risk of PC in adjusted models. There was a trend that the presence of DM reduced the risk of PC regardless of the presence of MetS components. Regarding associations of anti-diabetic drugs with the incidence of PC, DM patients who were taking less than three drugs of oral hypoglycemic agents including metformin showed a reduced risk of PC compared to patients without using metformin. This study supports an inverse relationship between DM and the risk of PC. However, the risk of PC can be different depending on glycemic status and sorts of anti-diabetic drugs.</p>","PeriodicalId":7437,"journal":{"name":"American journal of cancer research","volume":"14 11","pages":"5446-5455"},"PeriodicalIF":3.6,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11626276/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142805842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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