首页 > 最新文献

Proceedings. IEEE International Symposium on Computer-Based Medical Systems最新文献

英文 中文
Evaluation of Real-Time Remote 3D Rendering of Medical Images using GPUs 基于gpu的医学图像实时远程三维渲染评估
Pub Date : 2020-07-01 DOI: 10.1109/CBMS49503.2020.00011
Edson A. G. Coutinho, B. Carvalho
Remote visualization of medical data is a very attractive alternative to increased mobility, allowing volumetric data to be accessed even in devices with low processing capability. However, the amount of simultaneous accesses and the bandwidth available are natural bottlenecks for any solution in this field. This paper presents a methodology to evaluate 3D volumetric rendering client-servers systems with the goal of determining the maximum load of a specific system based on Quality of Service (QoS). With such input in mind, a system architect could project systems with better cost-benefit ratio, or even design a cloud system that predicts and rents servers based on the number of service requests. In order to check the viability of the methodology, a stress test was conducted in a client-server system developed to visualize Computed Tomography (CT) scans. Results have shown that it could handle at least 20 simultaneous remote visualizations, even in scenarios with low bandwidth, finding its upper limit when dealing with around 30 simultaneous visualizations.
医疗数据的远程可视化是增加移动性的一种非常有吸引力的替代方案,即使在处理能力较低的设备中也可以访问体积数据。然而,同时访问的数量和可用带宽是该领域任何解决方案的自然瓶颈。本文提出了一种评估三维体绘制客户端-服务器系统的方法,其目标是根据服务质量(QoS)确定特定系统的最大负载。有了这样的输入,系统架构师就可以设计具有更好成本效益比的系统,甚至可以设计基于服务请求数量预测和租用服务器的云系统。为了验证该方法的可行性,在开发用于可视化计算机断层扫描(CT)扫描的客户机-服务器系统中进行了压力测试。结果表明,即使在低带宽的情况下,它也可以处理至少20个同时进行的远程可视化,在处理大约30个同时进行的可视化时,它找到了上限。
{"title":"Evaluation of Real-Time Remote 3D Rendering of Medical Images using GPUs","authors":"Edson A. G. Coutinho, B. Carvalho","doi":"10.1109/CBMS49503.2020.00011","DOIUrl":"https://doi.org/10.1109/CBMS49503.2020.00011","url":null,"abstract":"Remote visualization of medical data is a very attractive alternative to increased mobility, allowing volumetric data to be accessed even in devices with low processing capability. However, the amount of simultaneous accesses and the bandwidth available are natural bottlenecks for any solution in this field. This paper presents a methodology to evaluate 3D volumetric rendering client-servers systems with the goal of determining the maximum load of a specific system based on Quality of Service (QoS). With such input in mind, a system architect could project systems with better cost-benefit ratio, or even design a cloud system that predicts and rents servers based on the number of service requests. In order to check the viability of the methodology, a stress test was conducted in a client-server system developed to visualize Computed Tomography (CT) scans. Results have shown that it could handle at least 20 simultaneous remote visualizations, even in scenarios with low bandwidth, finding its upper limit when dealing with around 30 simultaneous visualizations.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"102 1","pages":"19-24"},"PeriodicalIF":0.0,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79143955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
A Gamification-Based Framework for mHealth Developers in the Context of Self-Care 基于游戏化的移动医疗开发者自我保健框架
Pub Date : 2020-07-01 DOI: 10.1109/CBMS49503.2020.00033
L. W. Oliveira, S. T. Carvalho
This work investigates how gamification is used in self-care applications. Evidence in the literature indicates that the development of gamified mobile health applications has not taken into account the user's profile in order to correctly use the game elements in the solution; there also cases in which the use of gamification goes beyond the main purpose of the application, which is to treat health. This results in inefficiency in the use of the gamification strategy. To overcome this problem, this paper presents a gamification-based Framework, called Framework L, a method which incorporates concepts and practices in terms of two dimensions, Self-Care and Gamification, so that an mobile health application developer can design his application. In this context, adaptive gamification experiments were carried out in different ways. The first aims to improve the user experience when performing a manual test for the player profile. The second experiment uses machine learning to classify the user by player profile. These aspects make up the adaptive gamification cycle. The framework evaluation used the mixed method composed of a questionnaire and an online interview with experts. The results indicate that the framework helps developers marshal mobile health applications, primarily by encouraging user engagement.
这项工作调查了游戏化如何在自我护理应用中使用。文献证据表明,为了正确使用解决方案中的游戏元素,游戏化移动健康应用的开发并没有考虑到用户的个人资料;在某些情况下,游戏化的使用超出了应用程序的主要目的,即治疗健康。这导致游戏化策略的使用效率低下。为了克服这一问题,本文提出了一个基于游戏化的框架,称为框架L,这是一种结合自我保健和游戏化两个维度的概念和实践的方法,以便移动健康应用程序开发人员可以设计他的应用程序。在这种背景下,适应性游戏化实验以不同的方式进行。第一个目标是在为玩家配置文件执行手动测试时改善用户体验。第二个实验使用机器学习根据玩家的个人资料对用户进行分类。这些方面构成了适应性游戏化周期。框架评价采用问卷调查与专家在线访谈相结合的混合评价方法。结果表明,该框架主要通过鼓励用户参与来帮助开发人员组织移动健康应用程序。
{"title":"A Gamification-Based Framework for mHealth Developers in the Context of Self-Care","authors":"L. W. Oliveira, S. T. Carvalho","doi":"10.1109/CBMS49503.2020.00033","DOIUrl":"https://doi.org/10.1109/CBMS49503.2020.00033","url":null,"abstract":"This work investigates how gamification is used in self-care applications. Evidence in the literature indicates that the development of gamified mobile health applications has not taken into account the user's profile in order to correctly use the game elements in the solution; there also cases in which the use of gamification goes beyond the main purpose of the application, which is to treat health. This results in inefficiency in the use of the gamification strategy. To overcome this problem, this paper presents a gamification-based Framework, called Framework L, a method which incorporates concepts and practices in terms of two dimensions, Self-Care and Gamification, so that an mobile health application developer can design his application. In this context, adaptive gamification experiments were carried out in different ways. The first aims to improve the user experience when performing a manual test for the player profile. The second experiment uses machine learning to classify the user by player profile. These aspects make up the adaptive gamification cycle. The framework evaluation used the mixed method composed of a questionnaire and an online interview with experts. The results indicate that the framework helps developers marshal mobile health applications, primarily by encouraging user engagement.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"1 1","pages":"138-141"},"PeriodicalIF":0.0,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73514452","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Characterization of Diseases Based on Phenotypic Information Through Knowledge Extraction using Public Sources 利用公共资源的知识提取,基于表型信息的疾病表征
Pub Date : 2019-06-05 DOI: 10.1109/CBMS.2019.00124
Gerardo Lagunes García, A. R. González
Despite the huge findings made by the study of the behaviour of diseases, there are currently many non-cure or non-treatment diseases and only some of their symptoms can be beaten. Understanding how the diseases behave implies a complex analysis that together with the new technologies provide researchers with more calculation and observational capabilities, as well as novel approaches that allow us to observe how the diseases behave and relate in different environments with distinct factors. Current research aims to find new ways of characterizing the diseases based on phenotypic manifestations using knowledge extraction techniques from public sources. With the characterization of the diseases, a better understanding about the diseases and how similar they are can be achieved, leading for example to find new drugs that can be applied to different diseases. In order to carry out the present research we have made use of our own dataset of symptoms and diseases developed using an approach that allows us to generate phenotypic knowledge from the extraction of medical information from several data sources.
尽管对疾病行为的研究取得了巨大的发现,但目前仍有许多无法治愈或无法治疗的疾病,只有一些症状是可以战胜的。了解这些疾病的行为方式意味着需要进行复杂的分析,这种分析与新技术一起为研究人员提供了更多的计算和观察能力,以及新的方法,使我们能够观察疾病的行为方式以及在不同环境中与不同因素的关系。目前的研究旨在利用公共资源的知识提取技术,寻找基于表型表现的疾病特征的新方法。有了这些疾病的特征,就可以更好地了解这些疾病及其相似程度,例如,可以找到适用于不同疾病的新药。为了开展目前的研究,我们使用了我们自己的症状和疾病数据集,使用一种方法,使我们能够从几个数据源中提取医学信息,从而产生表型知识。
{"title":"Characterization of Diseases Based on Phenotypic Information Through Knowledge Extraction using Public Sources","authors":"Gerardo Lagunes García, A. R. González","doi":"10.1109/CBMS.2019.00124","DOIUrl":"https://doi.org/10.1109/CBMS.2019.00124","url":null,"abstract":"Despite the huge findings made by the study of the behaviour of diseases, there are currently many non-cure or non-treatment diseases and only some of their symptoms can be beaten. Understanding how the diseases behave implies a complex analysis that together with the new technologies provide researchers with more calculation and observational capabilities, as well as novel approaches that allow us to observe how the diseases behave and relate in different environments with distinct factors. Current research aims to find new ways of characterizing the diseases based on phenotypic manifestations using knowledge extraction techniques from public sources. With the characterization of the diseases, a better understanding about the diseases and how similar they are can be achieved, leading for example to find new drugs that can be applied to different diseases. In order to carry out the present research we have made use of our own dataset of symptoms and diseases developed using an approach that allows us to generate phenotypic knowledge from the extraction of medical information from several data sources.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"16 1","pages":"596-599"},"PeriodicalIF":0.0,"publicationDate":"2019-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84403314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Study of the Influence of Textual Features in Learning Medical Prior Authorization 文本特征对医学事先授权学习的影响研究
Pub Date : 2019-06-01 DOI: 10.1109/CBMS.2019.00021
Gilvan Veras Magalhães Júnior, João Paulo Albuquerque Vieira, Roney L. S. Santos, J. L. N. Barbosa, P. S. Neto, R. Moura
In Brazil, a current health problem is the low capacity of meeting an increasing demand for medical services. As a result, some people have resorted to supplementary health care, which involves the operation of private health plans and health insurance. However, many health maintenance organizations (HMO) face financial difficulties due to unnecessary procedures, fraud or abuses in the use of health services. In order to avoid unnecessary expenses, the HMO began to use a mechanism called prior authorization, where a prior analysis of each user's need is made to authorize or deny the required requests. This work aims to study the influence of the use of textual features in automatic prior authorization evaluation, by using Text Mining, Natural Language Processing and Machine Learning techniques. Experiments were performed using several machine learning algorithms combined with textual features, increasing the performance of the automatic prior authorization. Results indicate not only the textual features influence to the evaluation of the automatic prior authorization process but also improved the prediction of the classifiers.
在巴西,目前的一个健康问题是满足日益增长的医疗服务需求的能力不足。因此,一些人求助于补充保健,这涉及私人保健计划和健康保险的运作。然而,由于不必要的程序、欺诈或滥用保健服务,许多保健组织面临财政困难。为了避免不必要的开支,HMO开始使用一种称为事先授权的机制,即对每个用户的需求进行事先分析,以批准或拒绝所需的请求。本工作旨在通过使用文本挖掘、自然语言处理和机器学习技术,研究文本特征在自动事先授权评估中的使用影响。利用几种机器学习算法结合文本特征进行了实验,提高了自动先验授权的性能。结果表明,文本特征不仅影响了自动优先授权过程的评价,而且提高了分类器的预测能力。
{"title":"A Study of the Influence of Textual Features in Learning Medical Prior Authorization","authors":"Gilvan Veras Magalhães Júnior, João Paulo Albuquerque Vieira, Roney L. S. Santos, J. L. N. Barbosa, P. S. Neto, R. Moura","doi":"10.1109/CBMS.2019.00021","DOIUrl":"https://doi.org/10.1109/CBMS.2019.00021","url":null,"abstract":"In Brazil, a current health problem is the low capacity of meeting an increasing demand for medical services. As a result, some people have resorted to supplementary health care, which involves the operation of private health plans and health insurance. However, many health maintenance organizations (HMO) face financial difficulties due to unnecessary procedures, fraud or abuses in the use of health services. In order to avoid unnecessary expenses, the HMO began to use a mechanism called prior authorization, where a prior analysis of each user's need is made to authorize or deny the required requests. This work aims to study the influence of the use of textual features in automatic prior authorization evaluation, by using Text Mining, Natural Language Processing and Machine Learning techniques. Experiments were performed using several machine learning algorithms combined with textual features, increasing the performance of the automatic prior authorization. Results indicate not only the textual features influence to the evaluation of the automatic prior authorization process but also improved the prediction of the classifiers.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"451 2","pages":"56-61"},"PeriodicalIF":0.0,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1109/CBMS.2019.00021","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72457359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
How to Avoid Customer Churn in Health Insurance/Plans? A Machine Learn Approach 如何避免健康保险/计划的客户流失?机器学习方法
Pub Date : 2019-06-01 DOI: 10.1109/CBMS.2019.00115
Jefferson Henrique Camelo Soares, J. L. N. Barbosa, L. A. Lopes, Gilvan Veras Magalhães Júnior, R. Rabêlo, E. Passos, P. S. Neto
In a Health Plan, beneficiaries can cancel their contracts at any given time. For that reason, Health Insurance/Plan Providers (HIP) need to avoid optional contract cancellations to keep their financial operations stable. This work's main purpose is to develop an approach to predict the optional contract cancellation in a Private HIP and help them to prevent those cancelations.
在健康计划中,受益人可以随时取消合同。因此,健康保险/计划提供商(HIP)需要避免选择性的合同取消,以保持其财务运营稳定。本工作的主要目的是开发一种方法来预测私人HIP中的可选合同取消,并帮助他们防止这些取消。
{"title":"How to Avoid Customer Churn in Health Insurance/Plans? A Machine Learn Approach","authors":"Jefferson Henrique Camelo Soares, J. L. N. Barbosa, L. A. Lopes, Gilvan Veras Magalhães Júnior, R. Rabêlo, E. Passos, P. S. Neto","doi":"10.1109/CBMS.2019.00115","DOIUrl":"https://doi.org/10.1109/CBMS.2019.00115","url":null,"abstract":"In a Health Plan, beneficiaries can cancel their contracts at any given time. For that reason, Health Insurance/Plan Providers (HIP) need to avoid optional contract cancellations to keep their financial operations stable. This work's main purpose is to develop an approach to predict the optional contract cancellation in a Private HIP and help them to prevent those cancelations.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"3 1","pages":"559-562"},"PeriodicalIF":0.0,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83793528","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Snomed2Vec: Representation of SNOMED CT Terms with Word2Vec 用Word2Vec表示SNOMED CT术语
Pub Date : 2019-06-01 DOI: 10.1109/CBMS.2019.00138
I. M. Soriano, J. Castro, J. Fernández-breis, I. S. Román, A. A. Barriuso, David Guevara Baraza
Hospital Information Systems (H.I.S) use Electronic Health Record to store heterogeneous data from the patients. One important goal in this kind of systems is that the information must be, normalized and codify with a clinical terminology to represent exactly the healthcare meaning. Usually this process need human experts to identify and map the correct concept, this is a slow and tedious task. One of the most widespread clinical terminologies with more projection is Snomed-CT. This is an ontology multilingual clinical terminology that represent the clinical concepts with a unique code. We introduce in this paper Snomed2Vec, new approach of semantic search tool to find the most similar concepts using Snomed-CT. This is an ontology based named entity recognition system using word embedding, that suggest what is the most similar concept, that appear in a text. To evaluate the tool we suggest two kind of validations, one against a corpus gold with diagnostic from clinical reports, and a social validation, with a public free web access. We publish an access web to the academic world to use, test and validate the tool. The results of validation shows that this process help to the specialist to the election of choose the correct concepts from Snomed-CT. The paper illustrates 1) how create the initial big corpus of texts, to train the word2vec models, 2) how we use this vector space model to create our final Snomed2Vec vector space model, 3) The use of the cosine similarity distance, to obtain the most similar concepts, grouping by the hierarchies from Snomed-CT. We publish to the academic world: https://github.com/NachusS/Snomed2Vec access to the public web tool, and the notebook, for develop and test this paper.
医院信息系统(H.I.S)使用电子健康记录来存储来自患者的异构数据。这类系统的一个重要目标是,信息必须被规范化,并用临床术语编纂,以准确地表示医疗保健意义。通常这个过程需要人类专家来识别和绘制正确的概念,这是一个缓慢而繁琐的任务。其中一个最广泛的临床术语与更多的投影是Snomed-CT。这是一个多语言临床术语本体,用唯一的代码表示临床概念。本文介绍了一种新的语义搜索工具snomed - 2vec,它利用Snomed-CT来查找最相似的概念。这是一个基于本体的命名实体识别系统,它使用词嵌入来提示文本中出现的最相似的概念。为了评估该工具,我们建议进行两种验证,一种是针对临床报告诊断的语料库金,另一种是针对公共免费网络访问的社会验证。我们发布了一个访问网站,供学术界使用、测试和验证该工具。验证结果表明,该过程有助于专家从Snomed-CT中选择正确的概念。本文阐述了1)如何创建初始的大文本语料库,以训练word2vec模型;2)如何使用该向量空间模型来创建最终的snoomed2vec向量空间模型;3)使用余弦相似距离,从snoomed2vec中获得最相似的概念,按层次进行分组。我们向学术界发布:https://github.com/NachusS/Snomed2Vec访问公共网络工具,以及笔记本,用于开发和测试本文。
{"title":"Snomed2Vec: Representation of SNOMED CT Terms with Word2Vec","authors":"I. M. Soriano, J. Castro, J. Fernández-breis, I. S. Román, A. A. Barriuso, David Guevara Baraza","doi":"10.1109/CBMS.2019.00138","DOIUrl":"https://doi.org/10.1109/CBMS.2019.00138","url":null,"abstract":"Hospital Information Systems (H.I.S) use Electronic Health Record to store heterogeneous data from the patients. One important goal in this kind of systems is that the information must be, normalized and codify with a clinical terminology to represent exactly the healthcare meaning. Usually this process need human experts to identify and map the correct concept, this is a slow and tedious task. One of the most widespread clinical terminologies with more projection is Snomed-CT. This is an ontology multilingual clinical terminology that represent the clinical concepts with a unique code. We introduce in this paper Snomed2Vec, new approach of semantic search tool to find the most similar concepts using Snomed-CT. This is an ontology based named entity recognition system using word embedding, that suggest what is the most similar concept, that appear in a text. To evaluate the tool we suggest two kind of validations, one against a corpus gold with diagnostic from clinical reports, and a social validation, with a public free web access. We publish an access web to the academic world to use, test and validate the tool. The results of validation shows that this process help to the specialist to the election of choose the correct concepts from Snomed-CT. The paper illustrates 1) how create the initial big corpus of texts, to train the word2vec models, 2) how we use this vector space model to create our final Snomed2Vec vector space model, 3) The use of the cosine similarity distance, to obtain the most similar concepts, grouping by the hierarchies from Snomed-CT. We publish to the academic world: https://github.com/NachusS/Snomed2Vec access to the public web tool, and the notebook, for develop and test this paper.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"27 1","pages":"678-683"},"PeriodicalIF":0.0,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75239892","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Support for Accessibility, Reproducibility and Transparency in a Service-Oriented Gene Expression Analysis Platform 在面向服务的基因表达分析平台中支持可访问性、可重复性和透明性
Pub Date : 2019-06-01 DOI: 10.1109/CBMS.2019.00098
Wilson Daniel da Silva, C. D. Farias
An integrated platform can be used to support the analysis of gene expression data. In principle, this platform should provide support for accessibility, reproducibility and transparency in order to facilitate its use. However, this support varies among different platforms. SemanticSCo consists of an integrated platform that allows the development of a gene expression analysis workflow based on the semiautomatic composition of semantic web services. SemanticSCo provides limited support for accessibility. Further, the platform lacks support for reproducibility and transparency. This paper describes how accessibility was improved and how reproducibility and transparency were introduced into a new version of the platform, called SemanticSCo Web. These improvements facilitate the development, execution and sharing of gene expression analysis workflows.
一个集成的平台可以用来支持基因表达数据的分析。原则上,该平台应支持可访问性、可再现性和透明度,以促进其使用。但是,这种支持在不同的平台之间是不同的。SemanticSCo由一个集成平台组成,该平台允许基于语义web服务的半自动组合开发基因表达分析工作流。semantic为可访问性提供了有限的支持。此外,该平台缺乏对可重复性和透明度的支持。本文描述了如何改进可访问性,以及如何将可再现性和透明性引入到称为semantic Web的新版本平台中。这些改进促进了基因表达分析工作流程的开发、执行和共享。
{"title":"Support for Accessibility, Reproducibility and Transparency in a Service-Oriented Gene Expression Analysis Platform","authors":"Wilson Daniel da Silva, C. D. Farias","doi":"10.1109/CBMS.2019.00098","DOIUrl":"https://doi.org/10.1109/CBMS.2019.00098","url":null,"abstract":"An integrated platform can be used to support the analysis of gene expression data. In principle, this platform should provide support for accessibility, reproducibility and transparency in order to facilitate its use. However, this support varies among different platforms. SemanticSCo consists of an integrated platform that allows the development of a gene expression analysis workflow based on the semiautomatic composition of semantic web services. SemanticSCo provides limited support for accessibility. Further, the platform lacks support for reproducibility and transparency. This paper describes how accessibility was improved and how reproducibility and transparency were introduced into a new version of the platform, called SemanticSCo Web. These improvements facilitate the development, execution and sharing of gene expression analysis workflows.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"254 1","pages":"477-482"},"PeriodicalIF":0.0,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74935929","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Non Invasive Live Cell Cycle Monitoring using Quantitative Phase Imaging and Proximal Machine Learning Methods 使用定量相位成像和近端机器学习方法的无创活细胞周期监测
Pub Date : 2019-01-01 DOI: 10.1109/CBMS.2019.00099
P. Pognonec, M. Barlaud, B. Wattellier, T. Pourcher, Yuxiang Zhou, Sherazade Aknoun, M. Yonnet, M. Antonini
{"title":"Non Invasive Live Cell Cycle Monitoring using Quantitative Phase Imaging and Proximal Machine Learning Methods","authors":"P. Pognonec, M. Barlaud, B. Wattellier, T. Pourcher, Yuxiang Zhou, Sherazade Aknoun, M. Yonnet, M. Antonini","doi":"10.1109/CBMS.2019.00099","DOIUrl":"https://doi.org/10.1109/CBMS.2019.00099","url":null,"abstract":"","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"4 1","pages":"483-488"},"PeriodicalIF":0.0,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76032297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
STMC: Semantic Tag Medical Concept Using Word2Vec Representation 使用Word2Vec表示的语义标签医学概念
Pub Date : 2018-06-18 DOI: 10.1109/CBMS.2018.00075
I. M. Soriano, J. Castro
In this paper we propose a recognition system of medical concepts from free text clinical reports. Our approach tries to recognize also concepts which are named with local terminology, with medical writing scripts, short words, abbreviations and even spelling mistakes. We consider a clinical terminology ontology (Snomed-CT), as a dictionary of concepts. In a first step we obtain an embedding model using word2vec methodology from a big corpus database of clinical reports. Word vectors are positioned in the vector space such that words that share common contexts in the corpus are located in close proximity to one another in the space, and so the geometrical similarity can be considered a measure of semantic relation. We have considered 615513 emergency clinical reports from the Hospital "Rafael Mendez" in Lorca, Murcia. In these reports there are a lot of local language of the emergency domain, medical writing scripts, short words, abbreviations and even spelling mistakes. With the model obtained we represent the words and sentences as vectors, and by applying cosine similarity we identify which concepts of the ontology are named in the text. Finally, we represent the clinical reports (EHR) like a bag of concepts, and use this representation to search similar documents. The paper illustrates 1) how we build the word2vec model from the free text clinical reports, 2) How we extend the embedding from words to sentences, and 3) how we use the cosine similarity to identify concepts. The experimentation, and expert human validation, shows that: a) the concepts named in the text with the ontology terminology are well recognized, and b) others concepts that are not named with the ontology terminology are also recognized, obtaining a high precision and recall measures.
本文提出了一种基于自由文本临床报告的医学概念识别系统。我们的方法也试图识别用当地术语命名的概念,医学写作脚本,短句,缩写,甚至拼写错误。我们考虑一个临床术语本体(Snomed-CT),作为一个概念词典。在第一步中,我们使用word2vec方法从大型临床报告语料库数据库中获得嵌入模型。词向量被定位在向量空间中,使得语料库中具有共同上下文的词在空间中彼此接近,因此几何相似性可以被认为是语义关系的度量。我们审议了穆尔西亚洛尔卡"拉斐尔·门德斯"医院的615513份紧急临床报告。在这些报告中有大量的应急领域的当地语言,医学写作脚本,短词,缩写,甚至拼写错误。利用得到的模型,我们将单词和句子表示为向量,并通过余弦相似度来识别本体的哪些概念在文本中被命名。最后,我们将临床报告(EHR)表示为概念包,并使用这种表示来搜索类似的文档。本文阐述了1)如何从自由文本临床报告中构建word2vec模型,2)如何将嵌入从单词扩展到句子,以及3)如何使用余弦相似度来识别概念。实验和专家人工验证表明:a)文本中使用本体术语命名的概念被很好地识别,b)其他未使用本体术语命名的概念也被识别,获得了较高的准确率和召回率。
{"title":"STMC: Semantic Tag Medical Concept Using Word2Vec Representation","authors":"I. M. Soriano, J. Castro","doi":"10.1109/CBMS.2018.00075","DOIUrl":"https://doi.org/10.1109/CBMS.2018.00075","url":null,"abstract":"In this paper we propose a recognition system of medical concepts from free text clinical reports. Our approach tries to recognize also concepts which are named with local terminology, with medical writing scripts, short words, abbreviations and even spelling mistakes. We consider a clinical terminology ontology (Snomed-CT), as a dictionary of concepts. In a first step we obtain an embedding model using word2vec methodology from a big corpus database of clinical reports. Word vectors are positioned in the vector space such that words that share common contexts in the corpus are located in close proximity to one another in the space, and so the geometrical similarity can be considered a measure of semantic relation. We have considered 615513 emergency clinical reports from the Hospital \"Rafael Mendez\" in Lorca, Murcia. In these reports there are a lot of local language of the emergency domain, medical writing scripts, short words, abbreviations and even spelling mistakes. With the model obtained we represent the words and sentences as vectors, and by applying cosine similarity we identify which concepts of the ontology are named in the text. Finally, we represent the clinical reports (EHR) like a bag of concepts, and use this representation to search similar documents. The paper illustrates 1) how we build the word2vec model from the free text clinical reports, 2) How we extend the embedding from words to sentences, and 3) how we use the cosine similarity to identify concepts. The experimentation, and expert human validation, shows that: a) the concepts named in the text with the ontology terminology are well recognized, and b) others concepts that are not named with the ontology terminology are also recognized, obtaining a high precision and recall measures.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"32 1","pages":"393-398"},"PeriodicalIF":0.0,"publicationDate":"2018-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87924068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
SIPRAD: A Radiotherapy Planning System (RTPS) SIPRAD:放疗计划系统(RTPS)
Pub Date : 2018-06-01 DOI: 10.1109/CBMS.2018.00081
D. F. Carvalho, José Antonio Camacho Guerrero, A. Uscamayta, H. Vale, H. Oliveira
Cancer is one type of lethal disease that needs an immediate diagnosis and treatment, demanding the use of advanced technologies. External Radiotherapy is the most common treatment used in the world. Radiotherapy Planning Systems (RTPS) is a software suite used for delineation of organs and calculation of irradiation doses and is essential to ensure the accuracy of oncologic treatment in clinics and hospitals. This works presents a type of RTPS, named SIPRAD, developed for public hospitals reality in Brazil with the assistance of the doctors. SIPRAD architecture uses a number of management and operational tools for all radiotherapy treatment process. One of the main contributions of this work is its interoperable infrastructure capable of communicating with all health systems and devices. Another contribution is a drawing tool, which is able to perform an automatic contour delineation in organs at risk and tumors volumes. Additionally also extends the use of tomography slices in grayscale images applied in three plans: axial, coronal and sagittal. SIPRAD automatic contour delineation saves up 75% of the time for drawings in three different types of regions body exams. Finally, SIPRAD was tested in a set of oncologic exams provided by the University of Sao Paulo Clinical Hospital (HCRP and HC-USP) in Brazil obtained from patients with different conditions of ethnology, ages, tumor severities and body regions.
癌症是一种需要立即诊断和治疗的致命疾病,需要使用先进的技术。外部放射治疗是世界上最常用的治疗方法。放射治疗计划系统(RTPS)是一套用于描绘器官和计算辐照剂量的软件,对于确保诊所和医院肿瘤治疗的准确性至关重要。本作品介绍了一种名为SIPRAD的RTPS,它是在医生的帮助下根据巴西公立医院的实际情况开发的。SIPRAD架构在所有放射治疗过程中使用许多管理和操作工具。这项工作的主要贡献之一是其可互操作的基础设施,能够与所有卫生系统和设备进行通信。另一个贡献是绘图工具,它能够在危险器官和肿瘤体积中执行自动轮廓描绘。此外,还扩展了在灰度图像中应用三种计划的断层扫描切片:轴向,冠状和矢状。SIPRAD自动轮廓绘制在三种不同类型的区域体检查中节省75%的绘图时间。最后,SIPRAD在巴西圣保罗大学临床医院提供的一套肿瘤学检查(HCRP和HC-USP)中进行测试,这些检查来自不同人种学、年龄、肿瘤严重程度和身体区域的患者。
{"title":"SIPRAD: A Radiotherapy Planning System (RTPS)","authors":"D. F. Carvalho, José Antonio Camacho Guerrero, A. Uscamayta, H. Vale, H. Oliveira","doi":"10.1109/CBMS.2018.00081","DOIUrl":"https://doi.org/10.1109/CBMS.2018.00081","url":null,"abstract":"Cancer is one type of lethal disease that needs an immediate diagnosis and treatment, demanding the use of advanced technologies. External Radiotherapy is the most common treatment used in the world. Radiotherapy Planning Systems (RTPS) is a software suite used for delineation of organs and calculation of irradiation doses and is essential to ensure the accuracy of oncologic treatment in clinics and hospitals. This works presents a type of RTPS, named SIPRAD, developed for public hospitals reality in Brazil with the assistance of the doctors. SIPRAD architecture uses a number of management and operational tools for all radiotherapy treatment process. One of the main contributions of this work is its interoperable infrastructure capable of communicating with all health systems and devices. Another contribution is a drawing tool, which is able to perform an automatic contour delineation in organs at risk and tumors volumes. Additionally also extends the use of tomography slices in grayscale images applied in three plans: axial, coronal and sagittal. SIPRAD automatic contour delineation saves up 75% of the time for drawings in three different types of regions body exams. Finally, SIPRAD was tested in a set of oncologic exams provided by the University of Sao Paulo Clinical Hospital (HCRP and HC-USP) in Brazil obtained from patients with different conditions of ethnology, ages, tumor severities and body regions.","PeriodicalId":74567,"journal":{"name":"Proceedings. IEEE International Symposium on Computer-Based Medical Systems","volume":"119 1","pages":"428-433"},"PeriodicalIF":0.0,"publicationDate":"2018-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77454337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Proceedings. IEEE International Symposium on Computer-Based Medical Systems
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1