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The SARS-CoV-2 UTR's Intrudes Host RBP's and Modulates Cellular Splicing. SARS-CoV-2 UTR侵入宿主RBP并调节细胞剪接。
IF 2.2 Q4 VIROLOGY Pub Date : 2023-01-01 DOI: 10.1155/2023/2995443
Anjali Singh, Kush Kumar Pandey, Shubham Kumar Agrawal, Rupesh K Srivastava, Sankar Bhattacharyya, Bhupendra Verma

SARS-CoV-2 is a novel coronavirus that causes a potentially fatal respiratory disease known as coronavirus disease (COVID-19) and is responsible for the ongoing pandemic with increasing mortality. Understanding the host-virus interaction involved in SARS-CoV-2 pathophysiology will enhance our understanding of the mechanistic basis of COVID-19 infection. The characterization of post-transcriptional gene regulatory networks, particularly pre-mRNA splicing, and the identification and characterization of host proteins interacting with the 5' and 3'UTRs of SARS-CoV-2 will improve our understanding of post-transcriptional gene regulation during SARS-CoV-2 pathogenesis. Here, we demonstrate that either SARS-CoV-2 infection or exogenous overexpression of the 5' and 3'UTRs of the viral genomic RNAs, results in reduced mRNA levels possibly due to modulation of host cell pre-mRNA splicing. Further, we have investigated the potential RNA-binding proteins interacting with the 5' and 3'UTRs, using in-silico approaches. Our results suggest that 5' and 3'UTRs indeed interact with many RNA-binding proteins. Our results provide a primer for further investigations into the UTR-mediated regulation of splicing and related molecular mechanisms in host cells.

SARS-CoV-2是一种新型冠状病毒,可导致一种潜在致命的呼吸道疾病,即冠状病毒病(COVID-19),并导致持续的大流行,死亡率不断上升。了解SARS-CoV-2病理生理中涉及的宿主-病毒相互作用将增强我们对COVID-19感染机制基础的理解。转录后基因调控网络的表征,特别是mrna前剪接,以及与SARS-CoV-2的5'和3' utr相互作用的宿主蛋白的鉴定和表征,将提高我们对SARS-CoV-2发病过程中转录后基因调控的理解。在这里,我们证明了SARS-CoV-2感染或病毒基因组rna的5'和3' utr的外源性过表达,可能由于宿主细胞mRNA前剪接的调节而导致mRNA水平降低。此外,我们还利用计算机方法研究了与5'和3' utr相互作用的潜在rna结合蛋白。我们的研究结果表明,5'和3' utr确实与许多rna结合蛋白相互作用。我们的研究结果为进一步研究utr介导的宿主细胞剪接调控及其相关分子机制提供了基础。
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引用次数: 1
The Protective Potential Role of ACE2 against COVID-19. ACE2对COVID-19的潜在保护作用
IF 2.2 Q4 VIROLOGY Pub Date : 2023-01-01 DOI: 10.1155/2023/8451931
Fereshteh Golab, Gelareh Vahabzadeh, Leila SadeghRoudbari, Arefeh Shirazi, Robabeh Shabani, Sara Tanbakooei, Lida Kooshesh

Due to the coronavirus disease 2019 (COVID-19), researchers all over the world have tried to find an appropriate therapeutic approach for the disease. The angiotensin-converting enzyme 2 (ACE2) has been shown as a necessary receptor to cell fusion, which is involved in infection due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). It is commonly crucial for all organs and systems. When ACE2 is downregulated via the SARS-CoV-2 spike protein, it results in the angiotensin II (Ang II)/angiotensin type 1 receptor axis overactivation. Ang II has harmful effects, which can be evidenced by dysfunctions in many organs experienced by COVID-19 patients. ACE2 is the SARS-CoV-2 receptor and has an extensive distribution; thus, some COVID-19 cases experience several symptoms and complications. We suggest strategy for the potential protective effect of ACE2 to the viral infection. The current review will provide data to develop new approaches for preventing and controlling the COVID-19 outbreak.

由于2019冠状病毒病(COVID-19),世界各地的研究人员都在努力寻找合适的治疗方法。血管紧张素转换酶2 (ACE2)已被证明是细胞融合的必要受体,参与由严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)引起的感染。它通常对所有器官和系统都至关重要。当ACE2通过SARS-CoV-2刺突蛋白下调时,会导致血管紧张素II (Ang II)/血管紧张素1型受体轴过度激活。Ang II具有有害影响,这可以从COVID-19患者的许多器官功能障碍中得到证明。ACE2是SARS-CoV-2受体,分布广泛;因此,一些COVID-19病例会出现多种症状和并发症。我们提出了ACE2对病毒感染的潜在保护作用策略。目前的审查将为制定预防和控制COVID-19疫情的新方法提供数据。
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引用次数: 0
Therapeutic Promises of Plant Metabolites against Monkeypox Virus: An In Silico Study. 植物代谢物对猴痘病毒的治疗前景:一项计算机研究。
IF 2.2 Q4 VIROLOGY Pub Date : 2023-01-01 DOI: 10.1155/2023/9919776
Anik Banik, Sheikh Rashel Ahmed, Sonia Binte Shahid, Tufayel Ahmed, Hafaza Khandaker Tamanna, Hlamrasong Marma

The monkeypox virus was still spreading in May 2022, with the first case identified in a person with travel ties to Nigeria. Using molecular docking-based techniques, we evaluated the efficiency of different bioactive chemicals obtained from plants against the monkeypox virus. A total of 56 plant compounds were evaluated for antimonekypox capabilities, with the top four candidates having a higher binding affinity than the control. We targeted the monkeypox profilin-like protein, which plays a key role in viral replication and assembly. Among the metabolites, curcumin showed the strongest binding affinity with a value of -37.43 kcal/mol, followed by gedunin (-34.89 kcal/mol), piperine (-34.58 kcal/mol), and coumadin (-34.14 kcal/mol). Based on ADME and toxicity assessments, the top four substances had no negative impacts. Furthermore, four compounds demonstrated resistance to deformability, which was corroborated by normal mode analysis. According to the bioactivity prediction study, the top compound target class was an enzyme, membrane receptor, and oxidoreductase. Furthermore, the study discovered that wortmannin, a gedunin analogue, can behave as an orthopoxvirus. The study found that these bioactive natural drug candidates could potentially work as monkeypox virus inhibitors. We recommended further experimental validation to confirm the promising findings of the study.

猴痘病毒在2022年5月仍在传播,第一例病例是在一名与尼日利亚有旅行关系的人中发现的。利用基于分子对接的技术,我们评估了从植物中获得的不同生物活性化学物质对猴痘病毒的有效性。共鉴定了56种植物化合物的抗猴痘能力,结果表明,前4种候选化合物具有比对照更高的结合亲和力。我们的目标是猴痘profile -like蛋白,它在病毒复制和组装中起关键作用。代谢产物中,姜黄素的结合亲和力最强,为-37.43 kcal/mol,其次是根茎素(-34.89 kcal/mol)、胡椒碱(-34.58 kcal/mol)和香豆素(-34.14 kcal/mol)。根据ADME和毒性评估,前四种物质没有负面影响。此外,四种化合物表现出抗变形性,这得到了正态分析的证实。根据生物活性预测研究,化合物靶点最高的是酶、膜受体和氧化还原酶。此外,该研究还发现,一种皂荚素类似物wortmannin可以表现得像一种正痘病毒。研究发现,这些具有生物活性的天然候选药物有可能作为猴痘病毒抑制剂。我们建议进一步的实验验证,以确认该研究的有希望的发现。
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引用次数: 0
Contribution of the FilmArray BioFire® Technology in the Diagnosis of Viral Respiratory Infections during the COVID-19 Pandemic at Ibn Sina University Hospital Center in Rabat: Epidemiological Study about 503 Cases. FilmArray BioFire®技术在拉巴特伊本新浪大学医院中心COVID-19大流行期间病毒性呼吸道感染诊断中的贡献:约503例流行病学研究
IF 2.2 Q4 VIROLOGY Pub Date : 2023-01-01 DOI: 10.1155/2023/2679770
Khalid Edderdouri, Hakima Kabbaj, Leila Laamara, Noureddine Lahmouddi, Oumayma Lamdarsi, Amal Zouaki, Ghizlane El Amin, Jalila Zirar, Myriam Seffar

Respiratory viruses are the most involved pathogens in acute respiratory infections. During the COVID-19 pandemic, new elements have been brought to this topic, especially at the diagnostic and therapeutic level. The objective of this work is to describe the epidemiology of respiratory viruses in patients admitted to the Ibn Sina University Hospital of Rabat during a period characterized by the emergence and spread of SARS-CoV-2. We conducted a retrospective study from January 1 to December 31. We included all patients treated for acute respiratory infection and for whom a multiplex respiratory panel PCR was requested. Virus detection was performed using a FilmArray RP 2.1 plus BioFire multiplex respiratory panel. The study population was relatively adults with a mean age of 39 years. The sex ratio M/F was 1.20. The survey revealed a high prevalence of 42.3% of patients hospitalized in the adult intensive care unit whose respiratory distress was the most common reason for hospitalization (58%). The positivity rate was 48.1%. This rate was higher in the pediatric population 83.13% compared to adults 29.7%. Monoinfection was found in 36.4% of cases, and codetection in 11.7% of cases. This survey revealed that a total of 322 viruses were detected, HRV being the most incriminated virus (48.7%), followed by RSV in 13.8% of patients. Considering the five most detected viruses in our study (HRV, RSV, PIV3, ADV, and hMPV), we found that the incidence was significantly higher in the pediatric population. SARS-CoV-2 was detected only in adult's population. In our study, we found that influenza A and B viruses, PIV2, MERS, and all bacteria were not detected by this kit during the study period. Regarding the seasonal distribution, RSV and hMPV showed a significantly high incidence during autumn and summer and SARS-CoV-2 and CoV OC43 showed a high peak during winter. In this study, we found a lack of detection of influenza virus and a shift in the usual winter peak of RSV to the summer, while the detection of ADV and HRV was less affected. This difference in detection could be due on the one hand to the difference in stability between enveloped and nonenveloped viruses and on the other hand to the escape of certain viruses to the different sanitary measures introduced after the declaration of the COVID-19 pandemic. These same measures were effective against enveloped viruses such as RSV and influenza viruses. The emergence of SARS-CoV-2 has modified the epidemiology of other respiratory viruses, either directly by viral interference or indirectly by the preventive measures taken.

呼吸道病毒是急性呼吸道感染中最常见的病原体。在2019冠状病毒病大流行期间,这一主题被纳入了新的内容,特别是在诊断和治疗层面。这项工作的目的是描述在以SARS-CoV-2的出现和传播为特征的时期,拉巴特伊本西纳大学医院收治的患者呼吸道病毒的流行病学。我们从1月1日至12月31日进行了回顾性研究。我们纳入了所有因急性呼吸道感染而接受治疗并要求多重呼吸面板PCR的患者。采用FilmArray RP 2.1 + BioFire多路呼吸面板进行病毒检测。研究人群相对成年,平均年龄39岁。性别比M/F为1.20。调查显示,在成人重症监护病房住院的患者中,呼吸窘迫是最常见的住院原因(58%),患病率高达42.3%。阳性率为48.1%。这一比例在儿科人群中较高,为83.13%,而成人为29.7%。单例感染占36.4%,共检占11.7%。本次调查共检出322种病毒,HRV是最常见的病毒(48.7%),其次是RSV(13.8%)。考虑到我们研究中检测最多的五种病毒(HRV、RSV、PIV3、ADV和hMPV),我们发现儿科人群的发病率明显更高。SARS-CoV-2仅在成人人群中检测到。在我们的研究中,我们发现该试剂盒在研究期间未检测到甲型流感病毒和乙型流感病毒、PIV2病毒、MERS病毒和所有细菌。从季节分布来看,RSV和hMPV在秋季和夏季高发,SARS-CoV-2和CoV OC43在冬季高发。在本研究中,我们发现流感病毒检测不足,RSV通常的冬季高峰转移到夏季,而ADV和HRV的检测受影响较小。这种检测结果的差异,一方面是因为包膜病毒和非包膜病毒的稳定性不同,另一方面是因为在宣布为新冠肺炎大流行后,采取了不同的卫生措施,某些病毒得以逃脱。同样的措施对诸如RSV和流感病毒等包膜病毒也有效。SARS-CoV-2的出现或通过病毒的直接干扰,或通过采取预防措施间接改变了其他呼吸道病毒的流行病学。
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引用次数: 0
Knowledge and Attitude towards Human Papilloma Virus Infection, Vaccines, and Cervical Cancer Prevention among School Students in Kano, Nigeria. 尼日利亚卡诺市学生对人乳头瘤病毒感染、疫苗和宫颈癌预防的知识和态度。
IF 2.2 Q4 VIROLOGY Pub Date : 2023-01-01 DOI: 10.1155/2023/2803420
Ismail Rabiu, Zainab Yahuza

The rising cases of human papillomavirus (HPV) infection and cervical cancer cases in Nigeria are alarming. Only a few studies have looked at secondary school students in Nigeria's understanding of HPV infection and vaccine acceptance, whereas earlier studies have mostly focused on screening. In this study, 400 students from two secondary schools in Kano State, Nigeria, were engaged with the aim of assessing their level of knowledge and attitudes regarding HPV infection. The study further seeks to understand the respondent's opinion on HPV vaccination and sensitize them to the health effects of HPV infection, thereby communicating the findings to the authorities concerned with policy making. The study revealed that only 128 (32%) and 142 (35.5%) respondents have knowledge about HPV and cervical cancer, respectively. Furthermore, none of the respondents were administered the HPV vaccine, with 81% of them not ready to take the vaccine. It was observed that the majority of the respondents (91%) believed that early hospital visits could help in mitigating HPV or cervical cancer cases. Following their sensitization, the respondents were observed to have different levels of satisfaction, ranging from very satisfied and satisfied to not satisfied. Effective awareness creation amongst students as well as parents is therefore essential in HPV vaccination projects, as well as in reducing the burden of cervical cancer in Nigeria.

尼日利亚人乳头瘤病毒(HPV)感染病例和宫颈癌病例的上升令人震惊。只有少数研究着眼于尼日利亚中学生对HPV感染和疫苗接受程度的了解,而早期的研究大多侧重于筛查。在这项研究中,来自尼日利亚卡诺州两所中学的400名学生参与了这项研究,目的是评估他们对HPV感染的知识水平和态度。该研究进一步寻求了解被调查者对人乳头瘤病毒疫苗接种的看法,使他们了解人乳头瘤病毒感染对健康的影响,从而将调查结果传达给与政策制定有关的当局。研究结果显示,分别只有128名(32%)和142名(35.5%)受访者了解HPV和子宫颈癌。此外,没有一个答复者接种了人乳头瘤病毒疫苗,其中81%的人不准备接种疫苗。据观察,大多数受访者(91%)认为及早到医院就诊有助于减轻人乳头瘤病毒或子宫颈癌病例。在他们的敏感化之后,被调查者被观察到有不同程度的满意度,从非常满意、满意到不满意。因此,在尼日利亚,在学生和家长中有效提高认识对于人乳头瘤病毒疫苗接种项目以及减轻宫颈癌负担至关重要。
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引用次数: 2
Partial Analysis of the Capsid Protein (VP1) of Human Sapovirus Isolated from Children with Diarrhoea in Rural Communities of South Africa 南非农村腹泻儿童中分离的人类Sapovirus衣壳蛋白(VP1)的部分分析
IF 2.2 Q4 VIROLOGY Pub Date : 2022-06-02 DOI: 10.1155/2022/9928378
Mpho Magwalivha, J. K. Ngandu, A. Traoré, N. Potgieter
Background Viral diarrhoea is a concern in acute gastroenteritis cases among children younger than 5 years of age. Sapovirus has been noted as an emerging causative agent of acute gastroenteritis worldwide. Objective/Study Design. The aim of this study was to characterize human sapoviruses targeting the VP1 (NVR and N-terminal) region. Twenty-five samples were randomly selected from 40 sapovirus-positive samples previously detected and analyzed for the VP1 region using the One-Step RT-PCR assay. The PCR products were subjected to Sanger sequencing analysis. Results The polyprotein segment (NVR and N-terminal) was successfully amplified from 10/25 samples. Sapovirus GI.1 was the most predominant strain (6/10; 60%), followed by SV-GII.1 (2/10; 20%) and 10% of each GI.3 and GII.3. Conclusion Through the partial analysis of the VP1 region, this study provides more data to add on the human sapovirus genetic characterization of circulating strains in South Africa, with the proposition of further analysis of sapovirus VP1 fragments for the viral structure and function.
背景病毒性腹泻是5岁以下儿童急性肠胃炎病例中的一个令人担忧的问题。皂化病毒已被认为是世界范围内急性肠胃炎的一种新病原体。目标/研究设计。本研究的目的是表征靶向VP1(NVR和N-末端)区域的人类腐病毒。从先前检测到的40个腐病毒阳性样本中随机选择25个样本,并使用一步RT-PCR测定法分析VP1区域。对PCR产物进行Sanger测序分析。结果成功地从10/25份样品中扩增出多蛋白片段(NVR和N末端)。皂苷病毒GI.1是最主要的菌株(6/10;60%),其次是SV-GII.1(2/10;20%),GI.3和GII.3各占10%。结论通过对VP1区域的部分分析,本研究为南非流行株的人类sapovirus基因鉴定提供了更多的数据,并提出了进一步分析sapovirusVP1片段的病毒结构和功能的建议。
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引用次数: 1
Impact of Thermal Pretreatment of Saliva on the RT-PCR Detection of SARS-CoV-2 唾液热预处理对SARS-CoV-2 RT-PCR检测的影响
IF 2.2 Q4 VIROLOGY Pub Date : 2022-06-01 DOI: 10.1155/2022/7442907
O. Morais, Manuel Rui Azevedo Alves, Paulo Fernandes
The use of saliva directly as a specimen to detect viral RNA by RT-PCR has been tested for a long time as its advantages are relevant in terms of convenience and costs. However, as other body fluids, its proven inhibition effect on the amplification reaction can be troublesome and compromise its use in the detection of viral particles. The aim of the present work is to demonstrate that saliva pretreatment may influence the RT-PCR amplification of three gene targets of SARS-CoV-2 significantly. A pool of RNA from confirmed COVID-19 patients was used to test the influence of heat pretreatment of saliva samples at 95°C for 5, 10, 15 and 20 min on the amplification performance of ORF1ab, E, and N SARS-CoV-2 genes. Prolonged heating at 95°C significantly improves the Ct value shift, usually observed in the presence of saliva, increasing the limit of detection of viral genes ORF1ab, E, and N. When tested using a cohort of COVID-19 patients' saliva, the increased time of heat pretreatment resulted in a significant increase in the detection sensitivity.
使用唾液直接作为样本通过RT-PCR检测病毒RNA已经测试了很长时间,因为它的优点与便利性和成本有关。然而,与其他体液一样,其对扩增反应的抑制作用可能很麻烦,并影响其在病毒颗粒检测中的应用。本工作的目的是证明唾液预处理可能显著影响严重急性呼吸系统综合征冠状病毒2型三个基因靶点的RT-PCR扩增。来自新冠肺炎确诊患者的RNA库用于测试唾液样本在95°C下热预处理5、10、15和20天的影响 min对ORF1ab、E和N严重急性呼吸系统综合征冠状病毒2型基因扩增性能的影响。在95°C下长时间加热显著改善了Ct值的变化,通常在有唾液的情况下观察到,增加了病毒基因ORF1ab、E和N的检测极限。当使用新冠肺炎患者的唾液队列进行测试时,加热预处理时间的增加导致检测灵敏度的显著提高。
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引用次数: 4
Comparative Performance Evaluation of FilmArray BioFire RP2.1 and MAScIR 2.0 Assays for SARS-CoV-2 Detection FilmArray BioFire RP2.1与MAScIR 2.0检测SARS-CoV-2的性能比较
IF 2.2 Q4 VIROLOGY Pub Date : 2022-06-01 DOI: 10.1155/2022/4510900
S. Tazi, H. Kabbaj, Jalila Zirar, Amal Zouaki, Ghizlane El Amin, Othman El Himeur, M. Seffar
Background RT-PCR is the gold standard for COVID-19 diagnosis, but the lack of standardization of assays, whose diagnostic performance may widely vary, complicates the interpretation of the discrepancies that may be encountered. Study design. We conducted a retrospective study over a ten-month period at the Central Laboratory of Virology of Ibn Sina University Hospital of Rabat. We included nasopharyngeal swabs, positive and negative for SARS-CoV-2 on FilmArray BioFire® Respiratory Panel 2.1 Plus, which were subjected to our laboratory's reference test, MAScIR SARS-CoV-2 M kit 2.0, initially or after a freeze-thaw cycle. The results were compared, and each discrepant sample with sufficient volume underwent the third test, using ARGENE® SARS-CoV-2 R-GENE kit. Results Of 80 SARS-CoV-2 negative samples on FilmArray, there were no discordant results, whereas of 80 SARS-CoV-2 positive samples on FilmArray, 21 had discordant results on MAScIR, and only 11 could be tested on ARGENE, revealing positive results in 6 cases. 12.7% and 76.5% correspond to the discordance rates for MAScIR (with one or both targets detected on FilmArray), while 14.3% and 100% correspond to those of ARGENE. As the estimated sensitivity and specificity of FilmArray, compared with MAScIR, were 100% and 79.2%, respectively, its lower limit of detection, and ARGENE assay results, made it difficult to distinguish between false positives on FilmArray and false negatives on MAScIR without further investigations. Conclusion The implementation of a new assay in our laboratory revealed discrepancies suggesting a lack of sensitivity of our laboratory's reference test, leading us consequently to retain the SARS-CoV-2 positive result of these discordant samples on FilmArray, regardless of the detection of one or both targets. Our study, which is, to our knowledge, the first comparing FilmArray RP2.1 and MAScIR 2.0 assays for SARS-CoV-2 detection, highlights the urgent need to standardize RT-PCR assays for COVID-19 diagnosis.
背景RT-PCR是新冠肺炎诊断的金标准,但缺乏检测的标准化,其诊断性能可能有很大差异,这使对可能遇到的差异的解释变得复杂。研究设计。我们在拉巴特伊本西纳大学医院的中央病毒学实验室进行了为期十个月的回顾性研究。我们在FilmArray BioFire®Respiratory Panel 2.1 Plus上纳入了严重急性呼吸系统综合征冠状病毒2阳性和阴性的鼻咽拭子,这些拭子在最初或冻融循环后接受了我们实验室的参考测试MAScIR严重急性呼吸系统冠状病毒2 M试剂盒2.0。对结果进行比较,并使用ARGENE®严重急性呼吸系统综合征冠状病毒2型R-GENE试剂盒对每个体积足够的差异样本进行第三次检测。结果在FilmArray上的80个严重急性呼吸系统综合征冠状病毒2型阴性样本中,没有不一致的结果,而在FilmAarray上的80份严重急性呼吸系冠状病毒2型阳性样本中,有21份在MAScIR上有不一致的结果,只有11份可以在ARGENE上检测,6例阳性。12.7%和76.5%对应于MAScIR(在FilmArray上检测到一个或两个目标)的不一致率,而14.3%和100%对应于ARGENE的不一致性。由于与MAScIR相比,FilmArray的估计灵敏度和特异性分别为100%和79.2%,其检测下限和ARGENE测定结果使得在没有进一步研究的情况下很难区分FilmArrays上的假阳性和MAScIR上的假阴性。结论在我们实验室实施的一种新的检测方法显示了差异,这表明我们实验室的参考检测缺乏敏感性,因此我们在FilmArray上保留了这些不一致样本的严重急性呼吸系统综合征冠状病毒2型阳性结果,无论检测到一个或两个靶点。据我们所知,我们的研究首次将FilmArray RP2.1和MAScIR 2.0检测方法用于SARS-CoV-2检测,这突出表明迫切需要标准化RT-PCR检测方法用于新冠肺炎诊断。
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引用次数: 7
Isolation and Molecular Characterization of Peste des Petits Ruminants Virus from Outbreaks in Southern Ethiopia, 2020 2020年埃塞俄比亚南部爆发的小反刍动物害虫病毒的分离和分子特征
IF 2.2 Q4 VIROLOGY Pub Date : 2022-05-29 DOI: 10.1155/2022/5329898
Abdeally Mohammed, T. R. Chibssa, Waktole Terfa, F. Aklilu, Delesa Damena, Redeat Belayneh, Menbere Kidane
Peste des petits ruminants (PPR) is one of the most important transboundary diseases of small ruminants. In this study, nasal and oral swabs (n = 24) were collected from sheep (n = 7) and goats (n = 17) with clinical signs in southern Ethiopia in March 2020. PPR virus was isolated on Vero dog cells expressing the signaling lymphocyte activation molecule (VDS) and screened using RT-qPCR. Positive samples were confirmed by conventional RT-PCR followed by sequencing of a partial nucleoprotein (N) gene segment. Results revealed that 54% (n = 13/24) of the tested samples were PPRV-positive Phylogenetic analysis revealed that the viruses belonged to lineage IV and lineage II. The lineage IV viruses were similar, although not identical, to other lineage IV viruses previously reported in Ethiopia and other East African countries while the lineage II viruses have been reported for the first time in Ethiopia showed a high nucleotide identity (99.06%) with the vaccine (Nigeria 75/1) that is currently used in Ethiopia for the prevention of PPR. Further investigations are therefore recommended in order to fully understand the true nature of the lineage II PPRVs in Ethiopia.
小反刍动物害虫(PPR)是小反刍动物最重要的跨界疾病之一。在这项研究中,鼻拭子和口腔拭子(n = 24)是从绵羊(n = 7) 和山羊(n = 17) 2020年3月在埃塞俄比亚南部出现临床症状。在表达信号淋巴细胞活化分子(VDS)的Vero狗细胞上分离PPR病毒,并使用RT-qPCR进行筛选。阳性样本通过常规RT-PCR确认,然后对部分核蛋白(N)基因片段进行测序。结果显示,54%(n = 13/24)为PPRV阳性。系统发育分析显示病毒属于谱系IV和谱系II。IV谱系病毒与埃塞俄比亚和其他东非国家先前报道的其他IV谱系病毒相似,尽管不完全相同,而埃塞俄比亚首次报道的II谱系病毒与目前埃塞俄比亚用于预防PPR的疫苗(尼日利亚75/1)显示出高核苷酸同一性(99.06%)。因此,建议进行进一步调查,以充分了解埃塞俄比亚第二谱系PPRV的真实性质。
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引用次数: 1
Association of Septic Shock with Mortality in Hospitalized COVID-19 Patients in Wuhan, China 武汉COVID-19住院患者感染性休克与死亡率的关系
IF 2.2 Q4 VIROLOGY Pub Date : 2022-04-23 DOI: 10.1155/2022/3178283
Shaoqiu Chen, Zitong Gao, Ling Hu, Y. Zuo, Yuanyuan Fu, Meilin Wei, Emory Zitello, G. Huang, Youping Deng
Purpose Septic shock is a severe complication of COVID-19 patients. We aim to identify risk factors associated with septic shock and mortality among COVID-19 patients. Methods A total of 212 COVID-19 confirmed patients in Wuhan were included in this retrospective study. Clinical outcomes were designated as nonseptic shock and septic shock. Log-rank test was conducted to determine any association with clinical progression. A prediction model was established using random forest. Results The mortality of septic shock and nonshock patients with COVID-19 was 96.7% (29/30) and 3.8% (7/182). Patients taking hypnotics had a much lower chance to develop septic shock (HR = 0.096, p=0.0014). By univariate logistic regression analysis, 40 risk factors were significantly associated with septic shock. Based on multiple regression analysis, eight risk factors were shown to be independent risk factors and these factors were then selected to build a model to predict septic shock with AUC = 0.956. These eight factors included disease severity (HR = 15, p < 0.001), age > 65 years (HR = 2.6, p=0.012), temperature > 39.1°C (HR = 2.9, p=0.047), white blood cell count > 10 × 10⁹ (HR = 6.9, p < 0.001), neutrophil count > 75 × 10⁹ (HR = 2.4, p=0.022), creatine kinase > 5 U/L (HR = 1.8, p=0.042), glucose > 6.1 mmol/L (HR = 7, p < 0.001), and lactate > 2 mmol/L (HR = 22, p < 0.001). Conclusions We found 40 risk factors were significantly associated with septic shock. The model contained eight independent factors that can accurately predict septic shock. The administration of hypnotics could potentially reduce the incidence of septic shock in COVID-19 patients.
目的感染性休克是新冠肺炎患者的严重并发症。我们的目的是确定与COVID-19患者感染性休克和死亡率相关的危险因素。方法对武汉市212例新冠肺炎确诊患者进行回顾性研究。临床结果分为非感染性休克和感染性休克。进行Log-rank检验以确定是否与临床进展相关。利用随机森林建立预测模型。结果感染性休克和非休克患者病死率分别为96.7%(29/30)和3.8%(7/182)。服用催眠药的患者发生感染性休克的几率较低(HR = 0.096, p=0.0014)。经单因素logistic回归分析,有40个危险因素与脓毒性休克显著相关。经多元回归分析,8个危险因素为独立危险因素,选取这些危险因素建立预测脓毒性休克的模型,AUC = 0.956。这八个因素包括疾病严重程度(HR = 15, p < 0.001),年龄> 65岁(HR = 2.6, p = 0.012),温度> 39.1°C (HR = 2.9, p = 0.047),白细胞计数> 10×10⁹(HR = 6.9, p < 0.001),中性粒细胞计数> 75×10⁹(HR = 2.4, p = 0.022),肌酸激酶> 5 U / L (HR = 1.8, p = 0.042),葡萄糖> 6.1更易/ L (HR = 7, p < 0.001),和乳酸> 2更易与L (HR = 22, p < 0.001)。结论发现有40种危险因素与脓毒性休克显著相关。该模型包含8个独立因素,可准确预测感染性休克。催眠药的使用可能会降低COVID-19患者感染性休克的发生率。
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引用次数: 7
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Advances in Virology
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