Pub Date : 2025-06-23DOI: 10.1007/s11224-025-02541-3
Rudolf Varga, Matúš Lištiak, Vladimír Kuchtanin, Jana Braniša, Miroslava Litecká, Jozef Švorec, Ján Moncoľ
Herein, we report the preparation and characterization of four new ionic complexes with the ligand 2-aminomethylbenzimidazole (L), namely [Ni(L)3](ClO3)2∙H2O∙0.7MeOH (1), [Ni(L)3](ClO4)2∙1.5H2O (2), [Ni(L)3](NO3)2 (3), [Ni(L)3](SO3NH2)2∙H2O (4). The structures were refined with Hirshfeld Atom Refinement (HAR), and various Hirshfeld surfaces were analysed. In all cases, three molecules of L are coordinated to the central atom in a bidentate-chelating manner, and every nickel atom adopts a pseudo-octahedral coordination geometry. The most significant contacts typically involve hydrogen bonds between the hydrogen atom of the imidazole ring and the inorganic anion or water molecules.
{"title":"Nickel(II) complexes with 2-aminomethylbenzimidazole: crystal structures and Hirshfeld surface analysis","authors":"Rudolf Varga, Matúš Lištiak, Vladimír Kuchtanin, Jana Braniša, Miroslava Litecká, Jozef Švorec, Ján Moncoľ","doi":"10.1007/s11224-025-02541-3","DOIUrl":"10.1007/s11224-025-02541-3","url":null,"abstract":"<div><p>Herein, we report the preparation and characterization of four new ionic complexes with the ligand 2-aminomethylbenzimidazole (L), namely [Ni(L)<sub>3</sub>](ClO<sub>3</sub>)<sub>2</sub>∙H<sub>2</sub>O∙0.7MeOH (<b>1</b>), [Ni(L)<sub>3</sub>](ClO<sub>4</sub>)<sub>2</sub>∙1.5H<sub>2</sub>O (<b>2</b>), [Ni(L)<sub>3</sub>](NO<sub>3</sub>)<sub>2</sub> (<b>3</b>), [Ni(L)<sub>3</sub>](SO<sub>3</sub>NH<sub>2</sub>)<sub>2</sub>∙H<sub>2</sub>O (<b>4</b>). The structures were refined with Hirshfeld Atom Refinement (HAR), and various Hirshfeld surfaces were analysed. In all cases, three molecules of L are coordinated to the central atom in a bidentate-chelating manner, and every nickel atom adopts a pseudo-octahedral coordination geometry. The most significant contacts typically involve hydrogen bonds between the hydrogen atom of the imidazole ring and the inorganic anion or water molecules.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"431 - 439"},"PeriodicalIF":2.2,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s11224-025-02541-3.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043496","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-23DOI: 10.1007/s11224-025-02540-4
Ekaterina S. Mescheryakova, Arthur R. Tulyabaev, Nail S. Akhmadiev, Leonard M. Khalilov
A dimethyl[(1H-1,2,4-triazol-1-yl) methyl]amine was synthesized for the first time without catalyst with a high yield and selectivity. Its structure was elucidated spectroscopically in the liquid state and with X-ray single-crystal analysis in the solid state. A distinctive feature of this compound is that C(sp2)–N bonds in 1,2,4-triazole unit are shorter than conventional C(sp2)–N one, which is probably due to stereoelectronic interactions. NBO and AIM approaches showed that there are interactions between lone pair of nitrogen atoms and π-antibonding orbitals of neighboring C = N bonds. This finding can be used to explain and to predict the chelation ability of 1,2,4-triazole derivatives to form complexes (for example, with metal ions). The Hirshfeld method made it possible to find that H…H, H…N/N…H, and H…O/O…H contacts play an important role to form the supramolecular assembly of the 1,2,4-triazole derivative in its single-crystal.
{"title":"Synthesis, spectroscopic characterization, and crystal structure analysis of dimethyl[(1H-1,2,4-triazol-1-yl)methyl]amine monohydrate: stereoelectronic and topological insights","authors":"Ekaterina S. Mescheryakova, Arthur R. Tulyabaev, Nail S. Akhmadiev, Leonard M. Khalilov","doi":"10.1007/s11224-025-02540-4","DOIUrl":"10.1007/s11224-025-02540-4","url":null,"abstract":"<div><p>A dimethyl[(1H-1,2,4-triazol-1-yl) methyl]amine was synthesized for the first time without catalyst with a high yield and selectivity. Its structure was elucidated spectroscopically in the liquid state and with X-ray single-crystal analysis in the solid state. A distinctive feature of this compound is that C(sp<sup>2</sup>)–N bonds in 1,2,4-triazole unit are shorter than conventional C(sp<sup>2</sup>)–N one, which is probably due to stereoelectronic interactions. NBO and AIM approaches showed that there are interactions between lone pair of nitrogen atoms and π-antibonding orbitals of neighboring C = N bonds. This finding can be used to explain and to predict the chelation ability of 1,2,4-triazole derivatives to form complexes (for example, with metal ions). The Hirshfeld method made it possible to find that H…H, H…N/N…H, and H…O/O…H contacts play an important role to form the supramolecular assembly of the 1,2,4-triazole derivative in its single-crystal.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"101 - 109"},"PeriodicalIF":2.2,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043455","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-23DOI: 10.1007/s11224-025-02530-6
Menna Moustafa, Hassan A. Etman, Mohamed R. Elmorsy, Ehab Abdel-Latif, Safa A. Badawy
In this theoretical study, we systematically designed and analyzed a series of anthracene-based donor–π–acceptor (D-π-A) sensitizers for dye-sensitized solar cells (DSSCs) using Density Functional Theory (DFT). Four dyes (Mn-1 to Mn-4) featured diverse substituents on the acceptor moiety, including carboxylic acid, chloro, and nitro groups. The structural, electronic, and optical properties of the sensitizers were investigated to elucidate their intramolecular charge transfer (ICT) efficiencies and impacts on photovoltaic performance. Computational analyses revealed that Mn-2 and Mn-4, which feature carboxylic acid and nitro groups, respectively, exhibited superior electronic properties, including optimal HOMO–LUMO energy alignment, reduced energy band gaps, and enhanced charge transfer characteristics. Mn-2 has emerged as the best candidate, demonstrating efficient electron injections and minimized recombination losses, supported by its favorable light-harvesting efficiency and open circuit voltage. These findings highlight the importance of molecular engineering in optimizing the sensitizer performance of high-efficiency DSSCs. This study provides valuable theoretical insights into the design of next-generation photovoltaic devices.
{"title":"Design, synthesis, and theoretical analysis of anthracene-based sensitizers for enhanced dye-sensitized solar cell efficiency","authors":"Menna Moustafa, Hassan A. Etman, Mohamed R. Elmorsy, Ehab Abdel-Latif, Safa A. Badawy","doi":"10.1007/s11224-025-02530-6","DOIUrl":"10.1007/s11224-025-02530-6","url":null,"abstract":"<div><p>In this theoretical study, we systematically designed and analyzed a series of anthracene-based donor–π–acceptor (D-π-A) sensitizers for dye-sensitized solar cells (DSSCs) using Density Functional Theory (DFT). Four dyes (<b>Mn-1</b> to <b>Mn-4</b>) featured diverse substituents on the acceptor moiety, including carboxylic acid, chloro, and nitro groups. The structural, electronic, and optical properties of the sensitizers were investigated to elucidate their intramolecular charge transfer (ICT) efficiencies and impacts on photovoltaic performance. Computational analyses revealed that <b>Mn-2</b> and <b>Mn-4</b>, which feature carboxylic acid and nitro groups, respectively, exhibited superior electronic properties, including optimal HOMO–LUMO energy alignment, reduced energy band gaps, and enhanced charge transfer characteristics. <b>Mn-2</b> has emerged as the best candidate, demonstrating efficient electron injections and minimized recombination losses, supported by its favorable light-harvesting efficiency and open circuit voltage. These findings highlight the importance of molecular engineering in optimizing the sensitizer performance of high-efficiency DSSCs. This study provides valuable theoretical insights into the design of next-generation photovoltaic devices.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"417 - 429"},"PeriodicalIF":2.2,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s11224-025-02530-6.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-21DOI: 10.1007/s11224-025-02532-4
Xiao-Fei Wang, Chen-Hao Bao, Sa-Sa Xia, Yuxing Cai, Xu-Sheng Wang, Jing Sun, Lige Qiao, Lan Li, Zhi Chen
In this study, we report the solvent-controlled synthesis of two novel Cd-MOFs using 4,4′-(hydroxyphosphoryl) dibenzoic acid (H2hpda) as a multifunctional phosphorus-containing ligand. By modulating the solvent polarity—using either DMF or DMA/H2O mixtures—we successfully obtained two distinct architectures: a 2D layered structure (CJLU-L4) and a 3D porous framework (CJLU-L5).Single-crystal X-ray diffraction analysis revealed that CJLU-L4 adopts a 2D layered structure with a porosity of 37.6%, whereas CJLU-L5 exhibits a 3D network structure with a significantly higher porosity of 57.7%. The phase purity of both cadmium-based MOFs was confirmed by powder X-ray diffraction (PXRD) and infraredspectroscopy (IR). Photoluminescence studies showed that the PL intensity of CJLU-L5 was lower, indicating that the framework dimension has an important influence on adjusting the optoelectronic properties of MOF.
{"title":"Solvent assisted synthesis and characterization of 2D and 3D cadmium metal–organic framework","authors":"Xiao-Fei Wang, Chen-Hao Bao, Sa-Sa Xia, Yuxing Cai, Xu-Sheng Wang, Jing Sun, Lige Qiao, Lan Li, Zhi Chen","doi":"10.1007/s11224-025-02532-4","DOIUrl":"10.1007/s11224-025-02532-4","url":null,"abstract":"<div><p>In this study, we report the solvent-controlled synthesis of two novel Cd-MOFs using 4,4′-(hydroxyphosphoryl) dibenzoic acid (H<sub>2</sub>hpda) as a multifunctional phosphorus-containing ligand. By modulating the solvent polarity—using either DMF or DMA/H<sub>2</sub>O mixtures—we successfully obtained two distinct architectures: a 2D layered structure (CJLU-L4) and a 3D porous framework (CJLU-L5).Single-crystal X-ray diffraction analysis revealed that CJLU-L4 adopts a 2D layered structure with a porosity of 37.6%, whereas CJLU-L5 exhibits a 3D network structure with a significantly higher porosity of 57.7%. The phase purity of both cadmium-based MOFs was confirmed by powder X-ray diffraction (PXRD) and infraredspectroscopy (IR). Photoluminescence studies showed that the PL intensity of CJLU-L5 was lower, indicating that the framework dimension has an important influence on adjusting the optoelectronic properties of MOF.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"409 - 416"},"PeriodicalIF":2.2,"publicationDate":"2025-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-21DOI: 10.1007/s11224-025-02543-1
Zhimei Tian, Dongyang He, Jingzhe Sun, Chongfu Song
The combined method of genetic algorithm and density functional theory (GA-DFT) has been used to study the size evolution and property of PdAgn (n = 1–17) clusters. Benchmark calculations reveal that the TPSSH/def2-TZVP method is suitable. The structures of the clusters are planar or quasi-planar when n = 1–4, whereas they are three-dimensional when n = 5–17. The Pd atom favors to locate at the position with the highest coordination number. Moreover, the Pd atom likes to locate at the central position for PdAgn clusters. Average bond lengths of Pd–Ag and Ag–Ag of PdAgn (n = 1–17) clusters are recorded, which reveals that rAg-Ag and rPd-Ag increases as cluster size. The charge of Pd atom increases as cluster size. The average bond orders of Pd–Ag and Ag–Ag bonds decrease as cluster size increases. The peaks of the ultraviolet–visible spectra of the clusters increase as cluster size, and the peaks present odd–even oscillations as cluster size. The stability of PdAgn clusters displays odd–even oscillation based on harness analysis and second-order energy difference analysis. According to thermodynamic analysis, the formation reactions of PdAgn are spontaneous when the Ag atom adds to PdAgn-1 clusters.
{"title":"Size evolution and property study on PdAgn (n = 1–17) clusters from density functional theory","authors":"Zhimei Tian, Dongyang He, Jingzhe Sun, Chongfu Song","doi":"10.1007/s11224-025-02543-1","DOIUrl":"10.1007/s11224-025-02543-1","url":null,"abstract":"<div><p>The combined method of genetic algorithm and density functional theory (GA-DFT) has been used to study the size evolution and property of PdAg<sub><i>n</i></sub> (<i>n</i> = 1–17) clusters. Benchmark calculations reveal that the TPSSH/def2-TZVP method is suitable. The structures of the clusters are planar or quasi-planar when <i>n</i> = 1–4, whereas they are three-dimensional when <i>n</i> = 5–17. The Pd atom favors to locate at the position with the highest coordination number. Moreover, the Pd atom likes to locate at the central position for PdAg<sub><i>n</i></sub> clusters. Average bond lengths of Pd–Ag and Ag–Ag of PdAg<sub><i>n</i></sub> (<i>n</i> = 1–17) clusters are recorded, which reveals that r<sub>Ag-Ag</sub> and r<sub>Pd-Ag</sub> increases as cluster size. The charge of Pd atom increases as cluster size. The average bond orders of Pd–Ag and Ag–Ag bonds decrease as cluster size increases. The peaks of the ultraviolet–visible spectra of the clusters increase as cluster size, and the peaks present odd–even oscillations as cluster size. The stability of PdAg<sub><i>n</i></sub> clusters displays odd–even oscillation based on harness analysis and second-order energy difference analysis. According to thermodynamic analysis, the formation reactions of PdAg<sub><i>n</i></sub> are spontaneous when the Ag atom adds to PdAg<sub><i>n</i>-1</sub> clusters.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"397 - 407"},"PeriodicalIF":2.2,"publicationDate":"2025-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-19DOI: 10.1007/s11224-025-02538-y
Yonas Belay, Alfred Muller, Cresten Moodley, Sage Singh, Adedapo S. Adeyinka
2-((1-Phenyl-1H-1,2,3-triazol-4-yl)methoxy)benzonitrile (3), was synthesized by scaffold Schiff base condensation reaction of 1,2,3-triazole (1) and then followed by its dehydration. The title compound was characterized by typical spectroscopic techniques such as 1H-NMR, 13C-NMR and FTIR. The structure of the title compound 3 was also determined by single crystal X-ray diffraction analysis. The compound co-crystallizes with water molecules, which occupy a twofold axis special position, in the orthorhombic system with space group Pnna and a = 13.606(3) Å, b = 23.442(5) Å, c = 8.2412(16) Å. The crystal structure is stabilized by strong hydrogen bonds between the water molecules and the compound, along with weaker secondary interactions, including π-π stacking and C-H···N interactions. The geometry of 3 was optimized by the DFT method and the results were compared with the single crystal X-ray diffraction data. Frontier molecular orbitals of the title compound 3 were calculated by using the B3LYP/6–31 + g(d,p) method. MEP analysis and Mulliken charge density, Global reactivity and thermodynamic properties were also performed.
以1,2,3-三唑(1)为原料,经支架席夫碱缩合反应合成2-((1-苯基- 1h -1,2,3-三唑-4-基)甲氧基)苯腈(3),并进行脱水。采用1H-NMR、13C-NMR和FTIR等典型波谱技术对该化合物进行了表征。标题化合物3的结构也通过单晶x射线衍射分析确定。该化合物与占据双轴特殊位置的水分子在空间群为Pnna的正交体系中共晶,a = 13.606(3) Å, b = 23.442(5) Å, c = 8.2412(16) Å。水分子与化合物之间的强氢键以及较弱的二次相互作用(包括π-π堆叠和C-H··N相互作用)稳定了晶体结构。利用DFT方法对3的几何结构进行了优化,并与单晶x射线衍射数据进行了比较。用B3LYP/ 6-31 + g(d,p)方法计算了标题化合物3的前沿分子轨道。MEP分析、Mulliken电荷密度、整体反应性和热力学性质也进行了测试。
{"title":"Synthesis, Spectral Properties, Crystal Structure and DFT Studies of 2-((1-Phenyl-1H-1,2,3-triazol-4-yl)methoxy)benzonitrile","authors":"Yonas Belay, Alfred Muller, Cresten Moodley, Sage Singh, Adedapo S. Adeyinka","doi":"10.1007/s11224-025-02538-y","DOIUrl":"10.1007/s11224-025-02538-y","url":null,"abstract":"<div><p>2-((1-Phenyl-1<i>H</i>-1,2,3-triazol-4-yl)methoxy)benzonitrile (<b>3</b>), was synthesized by scaffold Schiff base condensation reaction of 1,2,3-triazole (<b>1</b>) and then followed by its dehydration. The title compound was characterized by typical spectroscopic techniques such as <sup>1</sup>H-NMR, <sup>13</sup>C-NMR and FTIR. The structure of the title compound <b>3</b> was also determined by single crystal X-ray diffraction analysis. The compound co-crystallizes with water molecules, which occupy a twofold axis special position, in the orthorhombic system with space group Pnna and a = 13.606(3) Å, b = 23.442(5) Å, c = 8.2412(16) Å. The crystal structure is stabilized by strong hydrogen bonds between the water molecules and the compound, along with weaker secondary interactions, including π-π stacking and C-H···N interactions. The geometry of <b>3</b> was optimized by the DFT method and the results were compared with the single crystal X-ray diffraction data. Frontier molecular orbitals of the title compound <b>3</b> were calculated by using the B3LYP/6–31 + g(d,p) method. MEP analysis and Mulliken charge density, Global reactivity and thermodynamic properties were also performed.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"373 - 383"},"PeriodicalIF":2.2,"publicationDate":"2025-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s11224-025-02538-y.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043340","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A new coumarin-derived compound, featuring a 1,2-pyrazole ring with a morpholine substitution, was synthesized from N(4)-pyrrolidine thiosemicarbazide and 4-hydroxy-2-oxo-2H-1-benzopyran-3-carboxaldehyde in ethanol by using glacial acetic acid as a catalyst. Single crystal XRD analysis revealed the crystalline structure of the compound, identifying it as triclinic with a space group of P-1, with unit cell dimensions a = 7.6945(2) Å, b = 7.9693(2) Å, c = 12.2466(3) Å, and α = 108.6230(10)°, β = 93.3450(10)°, ϒ = 97.8130(10)°. The compound exhibited a rare cyclisation at very normal reaction conditions and that was quite unexpected. To the best of our knowledge, this is an uncommon cyclisation (formation of a pyrazole ring) rather than a coumarin-based thiosemicarbazone and the first one containing morpholine.
{"title":"Exploring uncommon cyclization: Synthesis and crystal structure of a morpholine-substituted 1,2-pyrazole from Coumarin","authors":"Puthiyavalappil Rasin, Kailas Mahipal Malappuram, Nattamai Bhuvanesh","doi":"10.1007/s11224-025-02546-y","DOIUrl":"10.1007/s11224-025-02546-y","url":null,"abstract":"<div><p>A new coumarin-derived compound, featuring a 1,2-pyrazole ring with a morpholine substitution, was synthesized from N(4)-pyrrolidine thiosemicarbazide and 4-hydroxy-2-oxo-2H-1-benzopyran-3-carboxaldehyde in ethanol by using glacial acetic acid as a catalyst. Single crystal XRD analysis revealed the crystalline structure of the compound, identifying it as triclinic with a space group of P-1, with unit cell dimensions a = 7.6945(2) Å, b = 7.9693(2) Å, c = 12.2466(3) Å, and α = 108.6230(10)°, β = 93.3450(10)°, ϒ = 97.8130(10)°. The compound exhibited a rare cyclisation at very normal reaction conditions and that was quite unexpected. To the best of our knowledge, this is an uncommon cyclisation (formation of a pyrazole ring) rather than a coumarin-based thiosemicarbazone and the first one containing morpholine.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"385 - 395"},"PeriodicalIF":2.2,"publicationDate":"2025-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-18DOI: 10.1007/s11224-025-02535-1
Deeb Taher, Sami Klaib, Khaleel I. Assaf, Zakariyya Ishtaiwi, Wissam Helal, Heinrich Lang
The current work reports the facile synthesis and characterization of half-sandwich compounds [Ti(η5-C9H7)(Cl)2(OR)] (3) (R = iPr (3a); R = tBu (3b); R = 2,6-Ph2C6H3 (3c); CH2CH2(CC4H3S) (3d) (prepared via treatment of Ti(η5-C9H7)Cl3 (1) with LiOR (2a, R = iC3H7; 2b, R = tC4H9; 2c, R = 2,6-Ph2C6H3; 2d, R = CH2CH2(CC4H3S)) in a 1:1 molar ratio. Additionally, compounds 3a, 3b, and 3d were also obtained when compound 1 was reacted with HOR (2a, R = iC3H7; 2b, R = tC4H9; 2d, R = CH2CH2(CC4H3S)) under reflux in benzene. The half-sandwich titanium compounds 3a–d were characterized by elemental analyses, FT-IR, and 1H and 13C{1H}-NMR spectroscopy. Density functional theory (DFT) calculations at the B3LYP/6-31G(d) + LANL2DZ level of theory were carried out for 1 and 3a–d in order to better understand and rationalize the nature of bonding and thus demonstrate the effect of different substituents on the structural and electronic properties. The studies confirm a similar complexation pattern despite the different chemical nature of the substituents. However, the HOMO–LUMO frontier molecular orbitals analysis revealed ligand–metal charge transfer, and the calculations predicted smaller HOMO–LUMO energy gaps for 3c.
本文报道了半夹心化合物[Ti(η5-C9H7)(Cl)2(OR)] (3) (R = iPr (3a);R = tBu (3b);R = 2,6- ph2c6h3 (3c);CH2CH2(CC4H3S) (3d)(由LiOR (2a, R = iC3H7; 2b, R = tC4H9; 2c, R = 2,6- ph2c6h3; 2d, R = CH2CH2(CC4H3S))以1:1的摩尔比处理Ti(η5-C9H7)Cl3(1)制得)。此外,当化合物1与HOR (2a, R = iC3H7; 2b, R = tC4H9; 2d, R = CH2CH2(CC4H3S))在苯中回流反应时,还可得到化合物3a、3b和3d。采用元素分析、FT-IR、1H和13C{1H}-NMR对半夹层钛化合物3a-d进行了表征。在B3LYP/6-31G(d) + LANL2DZ理论水平上进行了1和3 - d的密度泛函理论(DFT)计算,以便更好地理解和合理化键的性质,从而证明不同取代基对结构和电子性质的影响。这些研究证实了类似的络合模式,尽管取代基的化学性质不同。然而,HOMO-LUMO前沿分子轨道分析揭示了配体-金属电荷转移,并且计算预测了3c的HOMO-LUMO能隙较小。
{"title":"[Ti{η5-C9H7}Cl2(OR)] half-sandwich complexes: synthesis and theoretical studies on substituent effects on the HOMO − LUMO energy gap","authors":"Deeb Taher, Sami Klaib, Khaleel I. Assaf, Zakariyya Ishtaiwi, Wissam Helal, Heinrich Lang","doi":"10.1007/s11224-025-02535-1","DOIUrl":"10.1007/s11224-025-02535-1","url":null,"abstract":"<div><p>The current work reports the facile synthesis and characterization of half-sandwich compounds [Ti(η<sup>5</sup>-C<sub>9</sub>H<sub>7</sub>)(Cl)<sub>2</sub>(OR)] (<b>3</b>) (R = <sup><i>i</i></sup>Pr (<b>3a</b>); R = <sup><i>t</i></sup>Bu (<b>3b</b>); R = 2,6-Ph<sub>2</sub>C<sub>6</sub>H<sub>3</sub> (<b>3c</b>); CH<sub>2</sub>CH<sub>2</sub>(<sup><i>C</i></sup>C<sub>4</sub>H<sub>3</sub>S) (<b>3d</b>) (prepared via treatment of Ti(η<sup>5</sup>-C<sub>9</sub>H<sub>7</sub>)Cl<sub>3</sub> (<b>1</b>) with LiOR (<b>2a</b>, R = <sup><i>i</i></sup>C<sub>3</sub>H<sub>7</sub>; <b>2b</b>, R = <sup><i>t</i></sup>C<sub>4</sub>H<sub>9</sub>; <b>2c</b>, R = 2,6-Ph<sub>2</sub>C<sub>6</sub>H<sub>3</sub>; <b>2d</b>, R = CH<sub>2</sub>CH<sub>2</sub>(<sup><i>C</i></sup>C<sub>4</sub>H<sub>3</sub>S)) in a 1:1 molar ratio. Additionally, compounds <b>3a</b>, <b>3b</b>, and <b>3d</b> were also obtained when compound <b>1</b> was reacted with HOR (<b>2a</b>, R = <sup><i>i</i></sup>C<sub>3</sub>H<sub>7</sub>; <b>2b</b>, R = <sup><i>t</i></sup>C<sub>4</sub>H<sub>9</sub>; <b>2d</b>, R = CH<sub>2</sub>CH<sub>2</sub>(<sup><i>C</i></sup>C<sub>4</sub>H<sub>3</sub>S)) under reflux in benzene. The half-sandwich titanium compounds <b>3a</b>–<b>d</b> were characterized by elemental analyses, FT-IR, and <sup>1</sup>H and <sup>13</sup>C{<sup>1</sup>H}-NMR spectroscopy. Density functional theory (DFT) calculations at the B3LYP/6-31G(d) + LANL2DZ level of theory were carried out for <b>1</b> and <b>3a</b>–<b>d</b> in order to better understand and rationalize the nature of bonding and thus demonstrate the effect of different substituents on the structural and electronic properties. The studies confirm a similar complexation pattern despite the different chemical nature of the substituents. However, the HOMO–LUMO frontier molecular orbitals analysis revealed ligand–metal charge transfer, and the calculations predicted smaller HOMO–LUMO energy gaps for <b>3c.</b></p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"343 - 353"},"PeriodicalIF":2.2,"publicationDate":"2025-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-14DOI: 10.1007/s11224-025-02534-2
Varangkana Jitchum, Thana Maihom
We investigate the glycolysis of poly(ethylene terephthalate) or PET catalyzed by cyanamide using density functional theory. A PET dimer with C−O linkages is modeled as a representative active region. The reaction can proceed via two mechanisms based on the role of cyanamide: one involves forming a hydrogen bond with the PET dimer, while the other facilitates hydrogen transfer to promote C–O bond cleavage and O–H bond dissociation in ethylene glycol. Cyanamide stabilizes all species in the glycolysis reaction pathways by reducing their relative energies compared to the bare system. The intrinsic activation barriers for both mechanisms in the cyanamide-catalyzed system are found to be 40.6 and 36.3 kcal/mol, respectively, both lower than the barrier observed in the bare system (42.0 kcal/mol). We further investigate a mechanism in which cyanamide plays a dual role, simultaneously facilitating hydrogen transfer and forming hydrogen bonds with the dimer. The activation barrier is significantly reduced to 33.6 kcal/mol compared to the single cyanamide-catalyzed systems. Hence, we suggest that cyanamide serves a dual function, promoting both hydrogen transfer for C–O bond cleavage and hydrogen bond formation with the dimer. Moreover, the electron-donating substitution on the amino group of cyanamide further enhances catalytic activity by reducing the energy barrier compared to the unsubstituted form. Finally, in the presence of a water molecule, the barrier for the dual-role mechanism is reduced to 24.8 kcal/mol. Therefore, explicit water enhances the catalytic activity of cyanamide for PET glycolysis by acting as a medium to facilitate hydrogen transfer.
{"title":"Computational study of poly(ethylene terephthalate) glycolysis catalyzed by cyanamide","authors":"Varangkana Jitchum, Thana Maihom","doi":"10.1007/s11224-025-02534-2","DOIUrl":"10.1007/s11224-025-02534-2","url":null,"abstract":"<div><p>We investigate the glycolysis of poly(ethylene terephthalate) or PET catalyzed by cyanamide using density functional theory. A PET dimer with C−O linkages is modeled as a representative active region. The reaction can proceed via two mechanisms based on the role of cyanamide: one involves forming a hydrogen bond with the PET dimer, while the other facilitates hydrogen transfer to promote C–O bond cleavage and O–H bond dissociation in ethylene glycol. Cyanamide stabilizes all species in the glycolysis reaction pathways by reducing their relative energies compared to the bare system. The intrinsic activation barriers for both mechanisms in the cyanamide-catalyzed system are found to be 40.6 and 36.3 kcal/mol, respectively, both lower than the barrier observed in the bare system (42.0 kcal/mol). We further investigate a mechanism in which cyanamide plays a dual role, simultaneously facilitating hydrogen transfer and forming hydrogen bonds with the dimer. The activation barrier is significantly reduced to 33.6 kcal/mol compared to the single cyanamide-catalyzed systems. Hence, we suggest that cyanamide serves a dual function, promoting both hydrogen transfer for C–O bond cleavage and hydrogen bond formation with the dimer. Moreover, the electron-donating substitution on the amino group of cyanamide further enhances catalytic activity by reducing the energy barrier compared to the unsubstituted form. Finally, in the presence of a water molecule, the barrier for the dual-role mechanism is reduced to 24.8 kcal/mol. Therefore, explicit water enhances the catalytic activity of cyanamide for PET glycolysis by acting as a medium to facilitate hydrogen transfer.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 1","pages":"333 - 342"},"PeriodicalIF":2.2,"publicationDate":"2025-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146043462","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-06-10DOI: 10.1007/s11224-025-02524-4
Fabio Pichierri
Contemporary quantum chemistry methods are the legacy of pioneers like John A. Pople, a Nobel Prize winner in 1998. Using such methods, we investigate the open-cage hydrocarbon derived from cubane upon removal of one of its CH moieties located at the vertex of the carbon skeleton. This hydrocarbon has C3v symmetry and, following a geometric analogy, is termed vertexane (VA). The halogen derivatives of VA, obtained by replacing the apical hydrogen atom with a halogen, and their organotin congeners with a tin-halogen bond are polar molecules which represent novel building blocks in the design of tomorrow’s materials. The covalently-bonded dimers of VA are also explored, one is dumbbell-shaped while the other is a caged hydrocarbon of intermediate composition between those of cubane and dodecahedrane.
当代量子化学方法是1998年诺贝尔奖得主约翰·a·波普尔(John a . people)等先驱者的遗产。利用这种方法,我们研究了从立方烷中去除位于碳骨架顶点的CH部分后得到的开笼型烃。这种碳氢化合物具有C3v对称,根据几何类比,称为顶点烷(VA)。VA的卤素衍生物是通过用卤素取代顶端的氢原子而获得的,它们的有机锡同系物与锡-卤素键是极性分子,代表了未来材料设计中的新型构建模块。探讨了VA的共价键二聚体,一种是哑铃形,另一种是介于立方烷和十二面体之间的笼状化合物。
{"title":"Vertexane and related molecules: a computational exploration with contemporary quantum chemistry methods","authors":"Fabio Pichierri","doi":"10.1007/s11224-025-02524-4","DOIUrl":"10.1007/s11224-025-02524-4","url":null,"abstract":"<div><p>Contemporary quantum chemistry methods are the legacy of pioneers like John A. Pople, a Nobel Prize winner in 1998. Using such methods, we investigate the open-cage hydrocarbon derived from cubane upon removal of one of its CH moieties located at the vertex of the carbon skeleton. This hydrocarbon has <i>C</i><sub><i>3v</i></sub> symmetry and, following a geometric analogy, is termed vertexane (VA). The halogen derivatives of VA, obtained by replacing the apical hydrogen atom with a halogen, and their organotin congeners with a tin-halogen bond are polar molecules which represent novel building blocks in the design of tomorrow’s materials. The covalently-bonded dimers of VA are also explored, one is dumbbell-shaped while the other is a caged hydrocarbon of intermediate composition between those of cubane and dodecahedrane. </p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1547 - 1556"},"PeriodicalIF":2.2,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145121712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}