Pub Date : 2024-08-21DOI: 10.1007/s11224-024-02367-5
Muhammad Atta Ur Rehman, Muhammad Adeel, Ume Aiman, Maria Zafar, Khurram Shahzad Munawar, Muhammad Haroon, Rajeh Alotaibi
Derivatives of aryl and hetero-aryl substituted oxazoles have several uses in agrochemicals, pharmaceuticals, and nonlinear optics (NLO). This study reports the synthesis and non-linear optical response (NLO) of three new compounds, viz., 2-(naphthalen-2-yl) oxazole (NTOZ), 2-(4-phenoxyphenyl) oxazole (PPOZ), and 2-(4'-bromo-2,2',6,6'-tetramethyl-[1,1'-biphenyl]-4-yl) oxazole (BMPOZ), for the first time by the palladium-catalyzed Suzuki coupling method. The structures of synthesized products were clarified by employing spectroscopic investigations using 1H, & 13C-NMR, FT-IR, and UV-visible. The DFT studies were conducted at the M06/6-31G (d,p) functional to visualize NLO properties. Various analyses, including frontier molecular orbitals (FMOs), natural bond orbitals (NBOs), transition density matrix (TDM), and density of state (DOS), were conducted to learn more about the NLO response of the aforesaid compounds. The results indicated that the NTOZ compound showed the lowermost band gap (4.764 eV) and uppermost bathochromic shift (307.257 nm) amongst NTOZ, PPOZ, and BMPOZ. Results of global reactivity correspond with FMO outcomes such as NTOZ with a lower band gap, which displayed lower hardness (2.382 eV) and higher softness (0.2099 eV) data. Owing to the unique properties of NTOZ, significant NLO responses such as βtotal = 1.3227 D and βtotal = 5.47910–30esu were investigated, indicating it is an effective NLO material.
{"title":"Synthesis of oxazole based chromophores via Pd (0) catalyzed reactions: experimental and computational studies","authors":"Muhammad Atta Ur Rehman, Muhammad Adeel, Ume Aiman, Maria Zafar, Khurram Shahzad Munawar, Muhammad Haroon, Rajeh Alotaibi","doi":"10.1007/s11224-024-02367-5","DOIUrl":"https://doi.org/10.1007/s11224-024-02367-5","url":null,"abstract":"<p>Derivatives of aryl and hetero-aryl substituted oxazoles have several uses in agrochemicals, pharmaceuticals, and nonlinear optics (NLO). This study reports the synthesis and non-linear optical response (NLO) of three new compounds, viz., 2-(naphthalen-2-yl) oxazole (<b>NTOZ</b>), 2-(4-phenoxyphenyl) oxazole (<b>PPOZ</b>), and 2-(4'-bromo-2,2',6,6'-tetramethyl-[1,1'-biphenyl]-4-yl) oxazole (<b>BMPOZ</b>), for the first time by the palladium-catalyzed Suzuki coupling method. The structures of synthesized products were clarified by employing spectroscopic investigations using <sup>1</sup>H, & <sup>13</sup>C-NMR, FT-IR, and UV-visible. The DFT studies were conducted at the M06/6-31G (d,p) functional to visualize NLO properties. Various analyses, including frontier molecular orbitals (FMOs), natural bond orbitals (NBOs), transition density matrix (TDM), and density of state (DOS), were conducted to learn more about the NLO response of the aforesaid compounds. The results indicated that the <b>NTOZ</b> compound showed the lowermost band gap (4.764 eV) and uppermost bathochromic shift (307.257 nm) amongst <b>NTOZ</b>, <b>PPOZ</b>, and <b>BMPOZ</b>. Results of global reactivity correspond with FMO outcomes such as <b>NTOZ</b> with a lower band gap, which displayed lower hardness (2.382 eV) and higher softness (0.2099 eV) data. Owing to the unique properties of <b>NTOZ</b>, significant NLO responses such as <i>β</i><sub><i>total</i></sub> = 1.3227 <i>D</i> and <i>β</i><sub><i>total</i></sub> = <i>5.47910</i><sup>–30</sup> <i>esu</i> were investigated, indicating it is an effective NLO material.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"59 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142215643","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-15DOI: 10.1007/s11224-024-02369-3
Jane S. Murray
This prefatory review begins with historical background relating to the emergence of the electrostatic potential into the field of chemistry and related fields, leading then into the major focus of this paper: electrostatic potentials at nuclei. The electrostatic potential at the nucleus of an atom, whether it be in the free state or in a neutral molecule or in an ionic molecular species, is qualitatively a characteristic property of the atom. It changes remarkably little from one molecular environment to another. As has been shown earlier by Politzer, the energies of atoms and molecules can be expressed both approximately and rigorously in terms of the electrostatic potentials at their nuclei. For example, molecular energies can be written entirely as summations over atomic contributions, with no explicit interatomic terms. This provides a basis for estimating the energy of an atom in a molecule and supports the validity of the atoms-in-molecules concept, however without the necessity of boundaries for the atoms. This has been further substantiated by a recent paper entitled “Atoms do exist in molecules: Analysis using electrostatic potentials at nuclei”, where the authors have shown that the electrostatic potential created by the electrons of all the other atoms at a particular nucleus in a molecular species, not including those associated with that particular atom itself, is almost identical in magnitude to the potential due to the other nuclei. The significance of this will be discussed, with an emphasis on atoms in molecules without boundaries.
{"title":"Atoms in molecules without boundaries: analyses via electrostatic potentials at nuclei","authors":"Jane S. Murray","doi":"10.1007/s11224-024-02369-3","DOIUrl":"10.1007/s11224-024-02369-3","url":null,"abstract":"<div><p>This prefatory review begins with historical background relating to the emergence of the electrostatic potential into the field of chemistry and related fields, leading then into the major focus of this paper: electrostatic potentials at nuclei. The electrostatic potential at the nucleus of an atom, whether it be in the free state or in a neutral molecule or in an ionic molecular species, is qualitatively a characteristic property of the atom. It changes remarkably little from one molecular environment to another. As has been shown earlier by Politzer, the energies of atoms and molecules can be expressed both approximately and rigorously in terms of the electrostatic potentials at their nuclei. For example, molecular energies can be written entirely as summations over atomic contributions, with no explicit interatomic terms. This provides a basis for estimating the energy of an atom in a molecule and supports the validity of the atoms-in-molecules concept, however without the necessity of boundaries for the atoms. This has been further substantiated by a recent paper entitled “Atoms do exist in molecules: Analysis using electrostatic potentials at nuclei”, where the authors have shown that the electrostatic potential created by the electrons of all the other atoms at a particular nucleus in a molecular species, not including those associated with that particular atom itself, is almost identical in magnitude to the potential due to the other nuclei. The significance of this will be discussed, with an emphasis on atoms in molecules without boundaries.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"35 5","pages":"1355 - 1364"},"PeriodicalIF":2.1,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s11224-024-02369-3.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142215645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A DFT (density functional theory) investigation using the generalized gradient approximation BP86 and the hybrid B3LYP functionals and TZP basis set is dealing with the bonding, the electronic structure and the interaction types occurred within the XCuL’ and (LCuL’)+ (X = Cl, CH3, CN, CF3, L = CO, NH3, PH3, and L’ = C2H2, C2H4, C4H6, C6H6, and NHC) complexes. The optimized structures and energy decomposition analysis of XCuL’ and (LCuL’)+ complexes were employed to provide a relationship between the bond lengths, the X-Cu-L’ and L-Cu-L’ bond angles, the Wiberg indices, the Mayer bond orders, interaction energies, and the Cu-L’ bonding character. The energy decomposition analysis indicates that the interactions occurred for various L’ ligands are more electrostatically than covalently bonded to the Cu(I) center formally of + I oxidation state. The different contributions stemming from electrostatic and orbital interactions are significant, in relationship with the ionic and covalent characters, respectively. The contribution from σ-donation to the bonding energy was found more important for the NHC ligand than the alkene and alkynes ones. However, the contribution from π-back-donation was found to be comparable for all complexes. The σ-bonding contributes more than 50% into the total orbital interaction overtaking those of π type, in accordance with the population of the copper 4s orbital, particularly in the presence of C6H6 and NHC ligands. The interactions in all complexes exhibit comparable deformation densities and NOCV orbital shapes. Besides, it has been shown that the ΔEprep contributes weakly in the deformation of the interacting fragments as well as the BSSE correction which impacts weakly or negligibly the interactions between the fragments composing different XCuL’ and (LCuL’)+ complexes.
{"title":"Nature of the chemical bonding and electronic structure of dicoordinated copper(I) complexes of alkenes, alkynes, and NHC ligands: a DFT overview","authors":"Nadjet Aimene, Abdallah Zaiter, Hacene Nemdili, Bachir Zouchoune","doi":"10.1007/s11224-024-02366-6","DOIUrl":"https://doi.org/10.1007/s11224-024-02366-6","url":null,"abstract":"<p>A DFT (density functional theory) investigation using the generalized gradient approximation BP86 and the hybrid B3LYP functionals and TZP basis set is dealing with the bonding, the electronic structure and the interaction types occurred within the XCuL’ and (LCuL’)<sup>+</sup> (X = Cl, CH<sub>3</sub>, CN, CF<sub>3</sub>, L = CO, NH<sub>3</sub>, PH<sub>3</sub>, and L’ = C<sub>2</sub>H<sub>2</sub>, C<sub>2</sub>H<sub>4</sub>, C<sub>4</sub>H<sub>6</sub>, C<sub>6</sub>H<sub>6</sub>, and NHC) complexes. The optimized structures and energy decomposition analysis of XCuL’ and (LCuL’)<sup>+</sup> complexes were employed to provide a relationship between the bond lengths, the X-Cu-L’ and L-Cu-L’ bond angles, the Wiberg indices, the Mayer bond orders, interaction energies, and the Cu-L’ bonding character. The energy decomposition analysis indicates that the interactions occurred for various L’ ligands are more electrostatically than covalently bonded to the Cu(I) center formally of + I oxidation state. The different contributions stemming from electrostatic and orbital interactions are significant, in relationship with the ionic and covalent characters, respectively. The contribution from σ-donation to the bonding energy was found more important for the NHC ligand than the alkene and alkynes ones. However, the contribution from π-back-donation was found to be comparable for all complexes. The σ-bonding contributes more than 50% into the total orbital interaction overtaking those of π type, in accordance with the population of the copper 4s orbital, particularly in the presence of C<sub>6</sub>H<sub>6</sub> and NHC ligands. The interactions in all complexes exhibit comparable deformation densities and NOCV orbital shapes. Besides, it has been shown that the ΔE<sub>prep</sub> contributes weakly in the deformation of the interacting fragments as well as the BSSE correction which impacts weakly or negligibly the interactions between the fragments composing different XCuL’ and (LCuL’)<sup>+</sup> complexes.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"42 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142215644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-27DOI: 10.1007/s11224-024-02365-7
Maria Mazhar, Areeba Asif, Nimra Maqsood, Haroon Ahmad, Naveed Hamid Nawaz Khan, Muhammad Nouman
This study explores the nonlinear optical (NLO) properties of hexamine (HMT) doped with transition metals scandium (Sc) and titanium (Ti), exhibiting enhanced NLO responses for advanced photonic devices. Employing ωB97XD functional for optimization and calculations, the study examines geometric parameters, electronic excitation, exciton binding energy (Eb), and vertical ionization energy (VIE) using DFT and TD-DFT. High VIE (3.25 to 4.52 eV) indicates enhanced stability in doped systems. The HOMO-LUMO gap decreases from 10.69 eV in pure HMT to 3.30 to 4.85 eV in the designed systems. These systems exhibit thermodynamic stability with binding energies 3.51 to 4.27 kcal/mol, and Ti-HMT-Ti being the most stable. A two-level approximation method is utilized to determine linear polarizability and nonlinear first and second hyperpolarizability (αstatic, βstatic, γstatic), which exhibits the highest γstatic (6546.63 au) value of Sc-HMT-Sc. Orbital transitions, charge distribution, electrophilicity, and nucleophilicity are examined using TDM, EDDM, and ESP, respectively. PDOS and TDOS provide insights into HOMO-LUMO gap reduction, NCI identifies the weak interactions and broadened and red-shifted UV absorption spectra, all are in the favour of NLO response of designed complexes. So, these materials show exceptional NLO properties and promising for optoelectronic applications.
{"title":"Scandium and Titanium doped hexamine for remarkable nonlinear optical properties: a DFT study","authors":"Maria Mazhar, Areeba Asif, Nimra Maqsood, Haroon Ahmad, Naveed Hamid Nawaz Khan, Muhammad Nouman","doi":"10.1007/s11224-024-02365-7","DOIUrl":"https://doi.org/10.1007/s11224-024-02365-7","url":null,"abstract":"<p>This study explores the nonlinear optical (NLO) properties of hexamine (HMT) doped with transition metals scandium (Sc) and titanium (Ti), exhibiting enhanced NLO responses for advanced photonic devices. Employing ωB97XD functional for optimization and calculations, the study examines geometric parameters, electronic excitation, exciton binding energy (E<sub>b</sub>), and vertical ionization energy (VIE) using DFT and TD-DFT. High VIE (3.25 to 4.52 eV) indicates enhanced stability in doped systems. The HOMO-LUMO gap decreases from 10.69 eV in pure HMT to 3.30 to 4.85 eV in the designed systems. These systems exhibit thermodynamic stability with binding energies 3.51 to 4.27 kcal/mol, and Ti-HMT-Ti being the most stable. A two-level approximation method is utilized to determine linear polarizability and nonlinear first and second hyperpolarizability (α<sub>static</sub>, β<sub>static</sub>, γ<sub>static</sub>), which exhibits the highest γ<sub>static</sub> (6546.63 au) value of Sc-HMT-Sc. Orbital transitions, charge distribution, electrophilicity, and nucleophilicity are examined using TDM, EDDM, and ESP, respectively. PDOS and TDOS provide insights into HOMO-LUMO gap reduction, NCI identifies the weak interactions and broadened and red-shifted UV absorption spectra, all are in the favour of NLO response of designed complexes. So, these materials show exceptional NLO properties and promising for optoelectronic applications.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"78 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141777896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.1007/s11224-024-02362-w
Muhammad Awais Rehman, Jawaria Fatima, Zia Ur Rehman, Suliman Yousef Alomar, Muhammad Sohiab, Abu Hamad
In this study, we employ density functional theory to investigate KXH3 (X = Ca, Sc, Ti, & Ni) hydride perovskites for H2 storage applications. Lattice parameters calculated using GGA-PBE are 4.482 Å, 4.154 Å, 3.974 Å, and 3.686 Å for KCaH3, KScH3, KTiH3, and KNiH3, respectively. Electronic structure analysis shows KScH3, KTiH3, and KNiH3 are metallic, while KCaH3 is a semiconductor. Strong bonding and long bond lengths indicate high hydrogen storage potential. The materials exhibit thermodynamic and mechanical stability, suggesting feasibility for experimental synthesis. Gravimetric analysis reveals promising hydrogen storage capacities: 3.646 wt% (KCaH3), 3.452 wt% (KScH3), 3.346 wt% (KTiH3), and 3.005 wt% (KNiH3). Calculated hydrogen desorption temperatures range from 442.40 K to 614.82 K, indicating suitability for practical hydrogen storage applications. These findings highlight the potential of KXH3 (X = Ca, Sc, Ti, & Ni) perovskites as effective hydrogen storage materials.
{"title":"The DFT study of the structural, hydrogen, electronic, mechanical, thermal, and optical properties of KXH3 (X = Ca, Sc, Ti, & Ni) perovskites for H2 storage applications","authors":"Muhammad Awais Rehman, Jawaria Fatima, Zia Ur Rehman, Suliman Yousef Alomar, Muhammad Sohiab, Abu Hamad","doi":"10.1007/s11224-024-02362-w","DOIUrl":"https://doi.org/10.1007/s11224-024-02362-w","url":null,"abstract":"<p>In this study, we employ density functional theory to investigate KXH<sub>3</sub> (X = Ca, Sc, Ti, & Ni) hydride perovskites for H2 storage applications. Lattice parameters calculated using GGA-PBE are 4.482 Å, 4.154 Å, 3.974 Å, and 3.686 Å for KCaH<sub>3</sub>, KScH<sub>3</sub>, KTiH<sub>3</sub>, and KNiH<sub>3</sub>, respectively. Electronic structure analysis shows KScH<sub>3</sub>, KTiH<sub>3</sub>, and KNiH<sub>3</sub> are metallic, while KCaH<sub>3</sub> is a semiconductor. Strong bonding and long bond lengths indicate high hydrogen storage potential. The materials exhibit thermodynamic and mechanical stability, suggesting feasibility for experimental synthesis. Gravimetric analysis reveals promising hydrogen storage capacities: 3.646 wt% (KCaH<sub>3</sub>), 3.452 wt% (KScH<sub>3</sub>), 3.346 wt% (KTiH<sub>3</sub>), and 3.005 wt% (KNiH<sub>3</sub>). Calculated hydrogen desorption temperatures range from 442.40 K to 614.82 K, indicating suitability for practical hydrogen storage applications. These findings highlight the potential of KXH<sub>3</sub> (X = Ca, Sc, Ti, & Ni) perovskites as effective hydrogen storage materials.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"245 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141777895","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-22DOI: 10.1007/s11224-024-02360-y
Zai-Fu Jiang, Hua-Long Jiang, Chang-Geng Luo, Shuai Zhang, Gen-Qquan Li
To delve into the microscopic property of the cluster RhSin (n = 6–15), this study employs the CALYPSO structure prediction program and density functional theory. The paper conducts a comprehensive theoretical analysis of the clusters, examining parameters such as structures, relative stabilities, charge transfer, vertical electron affinity, vertical ionization potential, chemical potential, chemical hardness, and infrared and Raman spectra. The optimization process reveals that the rhodium doping has clearly changed the structures of silicon clusters. The ground state geometries favor Rh-linked framework beginning from n = 6, and they favor Rh-encapsulated Si cages when n approach 10. RhSi13 cluster is more stable than its neighbors. The charges transfer within the clusters always transfer from silicon atom to rhodium atom, and there is spd hybridization in RhSin cluster. The analyzed chemical potential and chemical hardness pointed out the RhSi13 cluster has the stronger hardness than other clusters. At last, the infrared and Raman spectrum properties for RhSi13 cluster are analyzed.
为了深入研究RhSin(n = 6-15)团簇的微观性质,本研究采用了CALYPSO结构预测程序和密度泛函理论。论文对团簇进行了全面的理论分析,考察了结构、相对稳定性、电荷转移、垂直电子亲和力、垂直电离势、化学势、化学硬度以及红外光谱和拉曼光谱等参数。优化过程显示,铑的掺杂明显改变了硅团簇的结构。从 n = 6 开始,基态几何结构倾向于 Rh 链接框架,当 n 接近 10 时,它们倾向于 Rh 封装硅笼。RhSi13 簇比其邻近簇更稳定。簇内的电荷转移总是从硅原子转移到铑原子,RhSin 簇中存在 spd 杂化。对化学势和化学硬度的分析表明,RhSi13 团簇比其他团簇具有更强的硬度。最后,分析了 RhSi13 团簇的红外光谱和拉曼光谱特性。
{"title":"Geometrical and electronic properties of Sin (n = 6–15) clusters with rhodium impurity: a first-principles investigation","authors":"Zai-Fu Jiang, Hua-Long Jiang, Chang-Geng Luo, Shuai Zhang, Gen-Qquan Li","doi":"10.1007/s11224-024-02360-y","DOIUrl":"https://doi.org/10.1007/s11224-024-02360-y","url":null,"abstract":"<p>To delve into the microscopic property of the cluster RhSi<sub><i>n</i></sub> (<i>n</i> = 6–15), this study employs the CALYPSO structure prediction program and density functional theory. The paper conducts a comprehensive theoretical analysis of the clusters, examining parameters such as structures, relative stabilities, charge transfer, vertical electron affinity, vertical ionization potential, chemical potential, chemical hardness, and infrared and Raman spectra. The optimization process reveals that the rhodium doping has clearly changed the structures of silicon clusters. The ground state geometries favor Rh-linked framework beginning from <i>n</i> = 6, and they favor Rh-encapsulated Si cages when <i>n</i> approach 10. RhSi<sub>13</sub> cluster is more stable than its neighbors. The charges transfer within the clusters always transfer from silicon atom to rhodium atom, and there is <i>spd</i> hybridization in RhSi<sub><i>n</i></sub> cluster. The analyzed chemical potential and chemical hardness pointed out the RhSi<sub>13</sub> cluster has the stronger hardness than other clusters. At last, the infrared and Raman spectrum properties for RhSi<sub>13</sub> cluster are analyzed.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"39 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141742630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-20DOI: 10.1007/s11224-024-02361-x
Kun Zhang, Daoxin Wang, Shuangquan Wu, Chengeng Wang, Zhengguang Yu, Lei Zhang
Based on the template-assisted cyclocondensation procedure, two Schiff-base macrocyclic mononuclear lanthanide complexes (Pr-2l and Nd-2l) with the “lasso-type” architecture have been synthesized. According to X-ray structure analysis, the central ten-coordinate lanthanide ions (Pr3+ and Nd3+) in two complexes have distorted bicapped square antiprism geometry, and this geometry is completely encircled by two axial chelating nitrates on each side of the 23-membered macrocyclic plane and six donors in the macrocyclic skeleton. With the higher relatively inhibitory rates, the complex Pr-2l can show significant antimicrobial activities against C. albicans and MRSA with lower MIC values (7.81 and 3.91 μg·mL−1), while complex Nd-2l exhibited good antimicrobial activities for S. aureus, C. albicans, and MRSA whose MIC values are 1.95, 7.81, and 3.91 μg·mL−1. This current work is believed to provide another practical approach to further construct new antimicrobial materials by the use of Schiff-base and lanthanide antimicrobial fragments.
基于模板辅助环缩合程序,合成了两种具有 "拉索型 "结构的希夫碱大环单核镧系配合物(Pr-2l 和 Nd-2l)。根据 X 射线结构分析,两种配合物中的中心十配位镧系离子(Pr3+ 和 Nd3+)具有扭曲的双帽方形反棱柱几何结构,该几何结构被 23 元大环平面两侧的两个轴向螯合硝酸盐和大环骨架中的六个供体完全包围。复合物 Pr-2l 具有较高的相对抑制率,可对 MIC 值(7.81 和 3.91 μg-mL-1)较低的白僵菌和 MRSA 显示出显著的抗菌活性,而复合物 Nd-2l 则对金黄色葡萄球菌、白僵菌和 MRSA 显示出良好的抗菌活性,其 MIC 值分别为 1.95、7.81 和 3.91 μg-mL-1。目前的这项工作相信会为利用希夫碱和镧系元素抗菌片段进一步构建新型抗菌材料提供另一种实用方法。
{"title":"Template syntheses, molecular structures, and antimicrobial activities of two novel Schiff-base macrocyclic lanthanide complexes","authors":"Kun Zhang, Daoxin Wang, Shuangquan Wu, Chengeng Wang, Zhengguang Yu, Lei Zhang","doi":"10.1007/s11224-024-02361-x","DOIUrl":"https://doi.org/10.1007/s11224-024-02361-x","url":null,"abstract":"<p>Based on the template-assisted cyclocondensation procedure, two Schiff-base macrocyclic mononuclear lanthanide complexes (<b>Pr-2</b><sub><b>l</b></sub> and <b>Nd-2</b><sub><b>l</b></sub>) with the “lasso-type” architecture have been synthesized. According to X-ray structure analysis, the central ten-coordinate lanthanide ions (Pr<sup>3+</sup> and Nd<sup>3+</sup>) in two complexes have distorted bicapped square antiprism geometry, and this geometry is completely encircled by two axial chelating nitrates on each side of the 23-membered macrocyclic plane and six donors in the macrocyclic skeleton. With the higher relatively inhibitory rates, the complex <b>Pr-2</b><sub><b>l</b></sub> can show significant antimicrobial activities against <i>C. albicans</i> and <i>MRSA</i> with lower MIC values (7.81 and 3.91 μg·mL<sup>−1</sup>), while complex <b>Nd-2</b><sub><b>l</b></sub> exhibited good antimicrobial activities for <i>S. aureus</i>, <i>C. albicans</i>, and <i>MRSA</i> whose MIC values are 1.95, 7.81, and 3.91 μg·mL<sup>−1</sup>. This current work is believed to provide another practical approach to further construct new antimicrobial materials by the use of Schiff-base and lanthanide antimicrobial fragments.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"13 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141742674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Using the B3LYP-D3 functional and the 6-311++G(d,p) basis set, the fluoride (F−), chloride (Cl−), bromide (Br−), cyanide (CN−), nitrate (NO3−), and sulfate (SO42−) affinities of perfluorocubane (PFC) was theoretically investigated. This anion receptor interacts to the selected anions by LP → σ* interactions. It was discovered that the charge distribution in a small radius and net charge value in anion have a significant impact on the anion affinities of PFC structure. The natural bond orbital (NBO) analysis was used for identifying the detailed characteristics of anion… PFC interactions. The ∆H value of anion affinity of PFC for F−, Cl−, Br−, CN−, NO3−, and SO42− was calculated as − 139.36, − 63.53, − 50.30, − 66.64, − 46.21, and − 151.28 kJ mol−1, respectively. The obtained results show that the anion affinity of PFC for SO42− and F− are among the strong organic anion receptors.
{"title":"DFT exploration of anion accepting performance of perfluorocubane","authors":"Shomeys Bagheri, Morteza Rouhani, Javad Mokhtari Aliabad","doi":"10.1007/s11224-024-02363-9","DOIUrl":"https://doi.org/10.1007/s11224-024-02363-9","url":null,"abstract":"<p>Using the B3LYP-D3 functional and the 6-311++G(d,p) basis set, the fluoride (F<sup>−</sup>), chloride (Cl<sup>−</sup>), bromide (Br<sup>−</sup>), cyanide (CN<sup>−</sup>), nitrate (NO<sub>3</sub><sup>−</sup>), and sulfate (SO<sub>4</sub><sup>2−</sup>) affinities of perfluorocubane (PFC) was theoretically investigated. This anion receptor interacts to the selected anions by LP → σ* interactions. It was discovered that the charge distribution in a small radius and net charge value in anion have a significant impact on the anion affinities of PFC structure. The natural bond orbital (NBO) analysis was used for identifying the detailed characteristics of anion… PFC interactions. The ∆<i>H</i> value of anion affinity of PFC for F<sup>−</sup>, Cl<sup>−</sup>, Br<sup>−</sup>, CN<sup>−</sup>, NO<sub>3</sub><sup>−</sup>, and SO<sub>4</sub><sup>2−</sup> was calculated as − 139.36, − 63.53, − 50.30, − 66.64, − 46.21, and − 151.28 kJ mol<sup>−1</sup>, respectively. The obtained results show that the anion affinity of PFC for SO<sub>4</sub><sup>2−</sup> and F<sup>−</sup> are among the strong organic anion receptors.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"63 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141742646","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-15DOI: 10.1007/s11224-024-02322-4
Ruven L. Davidovich, Evgeny A. Goreshnik
The crystal structures of mixed-ligand sulfato-, selenato-, phosphato-, arsenato-, and chromato-fluoride complexes of uranyl and of mixed-ligand carboxylato-fluoride and mixed-ligand fluoride complexes with neutral donor ligands studied by the single-crystal X-ray diffraction method were systematized and discussed. The crystal chemical features of the structures of the mixed-ligand fluoride complexes of uranyl were determined: the coordination polyhedron of the hexavalent uranium atom in the structures of the mixed-ligand fluoride complexes of uranyl (except for three hexagonal-bipyramidal complexes) has a pentagonal-bipyramidal structure: the oxygen atoms of the uranyl group are located on the vertical axis of the pentagonal bipyramid, perpendicular to the equatorial plane in which five atoms are located. In dimeric and polymeric chains of mixed-ligand fluoride complexes of uranyl (with the exception of one compound in which the common bridge in the dimer complex is oxygen atoms), the uranyl units are linked via fluoride bridges. Inorganic and organic ligands, which contained O-donor atoms, combine dimers and polymer chains into layers and three-dimensional formation.
通过单晶 X 射线衍射方法系统研究和讨论了铀酰混合配体硫化物、硒化物、磷化物、砷化物和铬化物氟化物络合物的晶体结构,以及中性供体配体的混合配体羧基氟化物和混合配体氟化物络合物的晶体结构。确定了铀酰混合配体氟化物配合物结构的晶体化学特征:铀酰混合配体氟化物配合物结构中六价铀原子的配位多面体(除三个六方双锥配合物外)具有五方双锥结构:铀酰基团的氧原子位于五方双锥的垂直轴上,垂直于五个原子所在的赤道面。在铀酰混合配体氟化物络合物的二聚体和聚合物链中(有一种化合物除外,二聚体络合物中的共同桥是氧原子),铀酰单元通过氟化物桥连接在一起。含有 O-供体原子的无机和有机配体将二聚体和聚合物链结合成层和三维形式。
{"title":"Structural chemistry of mixed-ligand fluoride complexes of uranyl","authors":"Ruven L. Davidovich, Evgeny A. Goreshnik","doi":"10.1007/s11224-024-02322-4","DOIUrl":"10.1007/s11224-024-02322-4","url":null,"abstract":"<div><p>The crystal structures of mixed-ligand sulfato-, selenato-, phosphato-, arsenato-, and chromato-fluoride complexes of uranyl and of mixed-ligand carboxylato-fluoride and mixed-ligand fluoride complexes with neutral donor ligands studied by the single-crystal X-ray diffraction method were systematized and discussed. The crystal chemical features of the structures of the mixed-ligand fluoride complexes of uranyl were determined: the coordination polyhedron of the hexavalent uranium atom in the structures of the mixed-ligand fluoride complexes of uranyl (except for three hexagonal-bipyramidal complexes) has a pentagonal-bipyramidal structure: the oxygen atoms of the uranyl group are located on the vertical axis of the pentagonal bipyramid, perpendicular to the equatorial plane in which five atoms are located. In dimeric and polymeric chains of mixed-ligand fluoride complexes of uranyl (with the exception of one compound in which the common bridge in the dimer complex is oxygen atoms), the uranyl units are linked via fluoride bridges. Inorganic and organic ligands, which contained O-donor atoms, combine dimers and polymer chains into layers and three-dimensional formation.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"35 6","pages":"1805 - 1827"},"PeriodicalIF":2.1,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s11224-024-02322-4.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141646649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-12DOI: 10.1007/s11224-024-02358-6
Hongsheng Wang, Hui Li, Xinhua Chen
Two lanthanide coordination polymers (CP) of Nd(III) and Tb(III) with 2,4,6-pyridinetricarboxylate ligands were synthesized by reacting Nd(III) or Tb(III) chlorides with 2,4,6-pyridinetricarboxylic acid (H3ptc) by hydrothermal method at 180 °C. Their chemical formulas were {[Nd(ptc)(H2O)2]·H2O}n (CP-1) and {[Tb(ptc)(H2O)3]·H2O}n (CP-2). Two compounds were characterized by IR spectra and element analyses. The crystal structures were determined by X-ray single crystal diffraction. CP-1 formed three-dimensional (3D) structure by the connections of coordination bonds between Nd(III) and ptc ligands and CP-2 formed two-dimensional (2D) layered structure. They could produce the characteristic f-f transition luminescence of Nd(III) or Tb(III) ion with the excitations of UV-rays. The lifetime for 5D4 excited state of Tb(III) in CP-2 was 741 μs. And the absolute quantum yield of photoluminescence for CP-2 can reach 60% (λex = 295 nm).
{"title":"Structure and luminescent properties of Nd(III) and Tb(III) coordination polymers with 2,4,6-pyridinetricarboxylate","authors":"Hongsheng Wang, Hui Li, Xinhua Chen","doi":"10.1007/s11224-024-02358-6","DOIUrl":"https://doi.org/10.1007/s11224-024-02358-6","url":null,"abstract":"<p>Two lanthanide coordination polymers (<b>CP</b>) of Nd(III) and Tb(III) with 2,4,6-pyridinetricarboxylate ligands were synthesized by reacting Nd(III) or Tb(III) chlorides with 2,4,6-pyridinetricarboxylic acid (H<sub>3</sub>ptc) by hydrothermal method at 180 °C. Their chemical formulas were {[Nd(ptc)(H<sub>2</sub>O)<sub>2</sub>]·H<sub>2</sub>O}<sub>n</sub> (<b>CP-1</b>) and {[Tb(ptc)(H<sub>2</sub>O)<sub>3</sub>]·H<sub>2</sub>O}<sub>n</sub> (<b>CP-2</b>). Two compounds were characterized by IR spectra and element analyses. The crystal structures were determined by X-ray single crystal diffraction. <b>CP</b>-<b>1</b> formed three-dimensional (3D) structure by the connections of coordination bonds between Nd(III) and ptc ligands and <b>CP-2</b> formed two-dimensional (2D) layered structure. They could produce the characteristic f-f transition luminescence of Nd(III) or Tb(III) ion with the excitations of UV-rays. The lifetime for <sup>5</sup>D<sub>4</sub> excited state of Tb(III) in <b>CP-2</b> was 741 μs. And the absolute quantum yield of photoluminescence for <b>CP-2</b> can reach 60% (<i>λ</i><sub>ex</sub> = 295 nm).</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"46 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141612197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}