Pub Date : 2025-12-01Epub Date: 2025-06-10DOI: 10.5713/ab.25.0103
Xinhong Zhou, Xiaoyun Shen
Objective: This study aimed to determine the effects of cecropin on the growth performance, antioxidant capacity, immune function, rumen fermentation parameters, and rumen microbiota of goats.
Methods: Twelve male Yudong black goats were randomly divided into two groups, with 6 replicates per group. The control group (CON) was fed a basic diet, while the antimicrobial peptide group (AMP) received a diet supplemented with 500 mg/kg cecropin. The experimental period lasted for 60 days.
Results: Compared with the CON group, the AMP group showed significantly improved FW (35.46 vs. 37.33 kg, p<0.05), average daily gain (205.19 vs. 234.78 g/d, p<0.05), and reduced feed-to-gain ratio (6.45 vs. 5.66, p<0.05). The AMP group presented significantly higher SOD, GSH-Px, and CAT activities and total antioxidant capacitylevels in the serum, while the MDA content was significantly lower (p<0.05). Furthermore, compared with the CON group, the les of IgG, IgA, and IL-10 in the AMP group were significanveltly increased, while the levels of IL-2, IL-6, IL-1β, and TNF-α were significantly decreased (p<0.05). In the rumen fluid, the AMP group presented significantly greater propionate and total volatile fatty acid levels, with a significantly lower acetate/propionate ratio (p<0.05). Microbial analysis revealed differences in rumen microbiota diversity and composition between the two groups. At the phylum level, the AMP group presented significantly greater abundances of Bacteroidota, Fibrobacterota, Desulfobacterota, and Elusimicrobiota, whereas the Firmicutes abundance was significantly lower than that in the CON group (p<0.05). At the genus level, the AMP group presented significantly greater abundances of Prevotella, Rikenellaceae_RC9_gut_group, F082, Fibrobacter, Prevotellaceae_ UCG-003, Bacteroidales_RF16_group, Christensenellaceae_R-7_group, and UCG-010, whereas the abundances of Prevotellaceae_UCG-001 and Butyrivibrio were significantly lower (p<0.05).
Conclusion: Overall, these results suggest that adding 500 mg/kg cecropin to the diet promotes goat growth performance by improving serum antioxidant capacity and immune function, optimizing rumen fermentation parameters, and modulating rumen microbiota.
目的:研究天蚕素对山羊生长性能、抗氧化能力、免疫功能、瘤胃发酵参数及瘤胃微生物群的影响。方法:选用12只雄性豫东黑山羊,随机分为2组,每组6个重复。对照组饲喂基础饲粮,抗菌肽组饲喂在基础饲粮中添加500 mg/kg天蚕素的饲粮。试验期60 d。结果:与CON组相比,AMP组显著提高了FW (35.46 vs. 37.33 kg, p < 0.05)、ADG (205.19 vs. 234.78 g/d, p < 0.05)、降低了F/ g (6.45 vs. 5.66, p < 0.05)。AMP组显著提高了血清中SOD、GSH-Px、CAT活性和T-AOC水平,显著降低了MDA含量(p)。结论:综上所示,饲粮中添加500 mg/kg天蚕素可通过提高血清抗氧化能力和免疫功能、优化瘤胃发酵参数和调节瘤胃微生物群来促进山羊生长性能。
{"title":"Cecropin supplementation improves growth performance by regulating immune function, rumen fermentation and microbiota in goats.","authors":"Xinhong Zhou, Xiaoyun Shen","doi":"10.5713/ab.25.0103","DOIUrl":"10.5713/ab.25.0103","url":null,"abstract":"<p><strong>Objective: </strong>This study aimed to determine the effects of cecropin on the growth performance, antioxidant capacity, immune function, rumen fermentation parameters, and rumen microbiota of goats.</p><p><strong>Methods: </strong>Twelve male Yudong black goats were randomly divided into two groups, with 6 replicates per group. The control group (CON) was fed a basic diet, while the antimicrobial peptide group (AMP) received a diet supplemented with 500 mg/kg cecropin. The experimental period lasted for 60 days.</p><p><strong>Results: </strong>Compared with the CON group, the AMP group showed significantly improved FW (35.46 vs. 37.33 kg, p<0.05), average daily gain (205.19 vs. 234.78 g/d, p<0.05), and reduced feed-to-gain ratio (6.45 vs. 5.66, p<0.05). The AMP group presented significantly higher SOD, GSH-Px, and CAT activities and total antioxidant capacitylevels in the serum, while the MDA content was significantly lower (p<0.05). Furthermore, compared with the CON group, the les of IgG, IgA, and IL-10 in the AMP group were significanveltly increased, while the levels of IL-2, IL-6, IL-1β, and TNF-α were significantly decreased (p<0.05). In the rumen fluid, the AMP group presented significantly greater propionate and total volatile fatty acid levels, with a significantly lower acetate/propionate ratio (p<0.05). Microbial analysis revealed differences in rumen microbiota diversity and composition between the two groups. At the phylum level, the AMP group presented significantly greater abundances of Bacteroidota, Fibrobacterota, Desulfobacterota, and Elusimicrobiota, whereas the Firmicutes abundance was significantly lower than that in the CON group (p<0.05). At the genus level, the AMP group presented significantly greater abundances of Prevotella, Rikenellaceae_RC9_gut_group, F082, Fibrobacter, Prevotellaceae_ UCG-003, Bacteroidales_RF16_group, Christensenellaceae_R-7_group, and UCG-010, whereas the abundances of Prevotellaceae_UCG-001 and Butyrivibrio were significantly lower (p<0.05).</p><p><strong>Conclusion: </strong>Overall, these results suggest that adding 500 mg/kg cecropin to the diet promotes goat growth performance by improving serum antioxidant capacity and immune function, optimizing rumen fermentation parameters, and modulating rumen microbiota.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2651-2664"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580749/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144282018","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Liuting Wu, Xin Sun, Felix Kwame Amevor, Gang Shu, Xiaoling Zhao
Objective: Bacillus coagulans is a spore-forming probiotic known for its resilience and metabolic activity, both of which are desirable in promoting gut health and oxidative balance. Nonetheless, the beneficial effects of B. coagulans-fermented bedding (BFB) on raising native Chinese chicken breed farming remain largely unknown. This study was conducted to evaluate BFB supplementation on growth performance, meat quality and gut health in Jiuyuan Black chicken.
Methods: A total of 120 male chicks were allocated to the control (CON, using traditional litter) and BFB groups with four replicates per group containing fifteen birds. The chickens were monitored for 70 days; growth performance was evaluated on days 35 and 70, while meat quality, intestinal integrity, antioxidant capacity, and animal welfare were evaluated on day 70.
Results: The results showed that, after 70 days, the chickens in the BFB group exhibited significantly higher average daily gain, lower feed conversion ratio, and increased semi-eviscerated yield and intramuscular fat content compared to the CON group (P < 0.05). Breast muscle from the BFB group showed enhanced flavor and juiciness than the CON group (P < 0.05). Furthermore, the histological analysis of the jejunum demonstrated increased villus height-to-crypt depth ratio, alongside upregulated expression of tight junction proteins (Claudin-1 and ZO-1) (P < 0.05). Additionally, total antioxidant capacity, catalase, and superoxide dismutase activities were increased, with reduced malondialdehyde levels in the serum and jejunal tissue (P < 0.05). Furthermore, BFB improved Jiuyuan Black chickens feather coverage (P < 0.05).
Conclusion: This study indicated that BFB treatment was a good source of reducing oxidative stress in broilers by improving gut health, antioxidant capacity and meat quality which may provide an essential proof for the practical application to enhance growth performance without causing welfare issues in poultry.
{"title":"Enhancing growth performance, meat quality, and gut health of Jiuyuan Black chickens by using Bacillus coagulans-fermented bedding.","authors":"Liuting Wu, Xin Sun, Felix Kwame Amevor, Gang Shu, Xiaoling Zhao","doi":"10.5713/ab.250646","DOIUrl":"https://doi.org/10.5713/ab.250646","url":null,"abstract":"<p><strong>Objective: </strong>Bacillus coagulans is a spore-forming probiotic known for its resilience and metabolic activity, both of which are desirable in promoting gut health and oxidative balance. Nonetheless, the beneficial effects of B. coagulans-fermented bedding (BFB) on raising native Chinese chicken breed farming remain largely unknown. This study was conducted to evaluate BFB supplementation on growth performance, meat quality and gut health in Jiuyuan Black chicken.</p><p><strong>Methods: </strong>A total of 120 male chicks were allocated to the control (CON, using traditional litter) and BFB groups with four replicates per group containing fifteen birds. The chickens were monitored for 70 days; growth performance was evaluated on days 35 and 70, while meat quality, intestinal integrity, antioxidant capacity, and animal welfare were evaluated on day 70.</p><p><strong>Results: </strong>The results showed that, after 70 days, the chickens in the BFB group exhibited significantly higher average daily gain, lower feed conversion ratio, and increased semi-eviscerated yield and intramuscular fat content compared to the CON group (P < 0.05). Breast muscle from the BFB group showed enhanced flavor and juiciness than the CON group (P < 0.05). Furthermore, the histological analysis of the jejunum demonstrated increased villus height-to-crypt depth ratio, alongside upregulated expression of tight junction proteins (Claudin-1 and ZO-1) (P < 0.05). Additionally, total antioxidant capacity, catalase, and superoxide dismutase activities were increased, with reduced malondialdehyde levels in the serum and jejunal tissue (P < 0.05). Furthermore, BFB improved Jiuyuan Black chickens feather coverage (P < 0.05).</p><p><strong>Conclusion: </strong>This study indicated that BFB treatment was a good source of reducing oxidative stress in broilers by improving gut health, antioxidant capacity and meat quality which may provide an essential proof for the practical application to enhance growth performance without causing welfare issues in poultry.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145659824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-04-28DOI: 10.5713/ab.24.0901
Xiuyun Guo, Shuangyi Xu, Chao Fu, Xiangren Meng
Objective: This study aimed to investigate the intrinsic relationships between meat quality, protein properties, and enzyme activities of pork longissimus dorsi treated with L-lysine (Lys) during postmortem aging.
Methods: The pork samples were collected from 18 twelve-month-old crossbred pigs (120 kg, Duroc×Long White Large×White, longissimus dorsi muscle) in three batches of six samples each. The meat was then immediately placed in a thermal container and transported to the laboratory within 1 hour for subsequent processing at 4°C. After removing fat and connective tissue, the pork was cut into 20 g±1 g meat blocks. Then, the samples were vacuum sealed and left in a freezer (4°C) for 0, 1 and 3 days.
Results: The results showed that Lys addition (0.10%, 0.15%, and 0.20%) improved pork quality (water-holding capacity and tenderness). On the third day of aging, the shear force values reached their lowest levels (p<0.05), measuring 38.21 N, 34.04 N, and 30.94 N for the respective treatment groups. In addition, the postmortem addition of Lys significantly increased the myofibrillar fragmentation index and actomyosin solubility during pork aging (p<0.05), with maximum values of 105.07% and 90.35%, respectively. Meanwhile, microscopic structure and electrophoresis results indicated that Lys treatment disrupted the muscle fiber structure, promoted the degradation of myofibrillar proteins (MPs) and dissociation of actomyosin. Furthermore, with increasing Lys addition, calpain-1 activity, caspase-3 activity, and Ca2+-ATPase activity in the muscle significantly increased (p<0.05), reaching maximum values of 17.46 ng/mL, 55.68 μg/mL, and 2.79 μmol (Pi)/min·mg protein, respectively. The activation of these enzymes promoted the dissociation and hydrolysis of key structural proteins.
Conclusion: Lys improved pork quality by increasing calpain-1, caspase-3, and Ca2+-ATPase activity during the postmortem aging, thereby promoting the degradation of MPs and the dissociation of the actomyosin.
{"title":"L-lysine improves pork quality during postmortem aging: insights into meat quality, protein properties, and enzyme activities.","authors":"Xiuyun Guo, Shuangyi Xu, Chao Fu, Xiangren Meng","doi":"10.5713/ab.24.0901","DOIUrl":"10.5713/ab.24.0901","url":null,"abstract":"<p><strong>Objective: </strong>This study aimed to investigate the intrinsic relationships between meat quality, protein properties, and enzyme activities of pork longissimus dorsi treated with L-lysine (Lys) during postmortem aging.</p><p><strong>Methods: </strong>The pork samples were collected from 18 twelve-month-old crossbred pigs (120 kg, Duroc×Long White Large×White, longissimus dorsi muscle) in three batches of six samples each. The meat was then immediately placed in a thermal container and transported to the laboratory within 1 hour for subsequent processing at 4°C. After removing fat and connective tissue, the pork was cut into 20 g±1 g meat blocks. Then, the samples were vacuum sealed and left in a freezer (4°C) for 0, 1 and 3 days.</p><p><strong>Results: </strong>The results showed that Lys addition (0.10%, 0.15%, and 0.20%) improved pork quality (water-holding capacity and tenderness). On the third day of aging, the shear force values reached their lowest levels (p<0.05), measuring 38.21 N, 34.04 N, and 30.94 N for the respective treatment groups. In addition, the postmortem addition of Lys significantly increased the myofibrillar fragmentation index and actomyosin solubility during pork aging (p<0.05), with maximum values of 105.07% and 90.35%, respectively. Meanwhile, microscopic structure and electrophoresis results indicated that Lys treatment disrupted the muscle fiber structure, promoted the degradation of myofibrillar proteins (MPs) and dissociation of actomyosin. Furthermore, with increasing Lys addition, calpain-1 activity, caspase-3 activity, and Ca2+-ATPase activity in the muscle significantly increased (p<0.05), reaching maximum values of 17.46 ng/mL, 55.68 μg/mL, and 2.79 μmol (Pi)/min·mg protein, respectively. The activation of these enzymes promoted the dissociation and hydrolysis of key structural proteins.</p><p><strong>Conclusion: </strong>Lys improved pork quality by increasing calpain-1, caspase-3, and Ca2+-ATPase activity during the postmortem aging, thereby promoting the degradation of MPs and the dissociation of the actomyosin.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2754-2766"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580742/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143962373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-07-11DOI: 10.5713/ab.25.0119
Bohan Zhou, Haijiao Xi, Yongsheng Yu, Jinquan Li, Rui Su, Qi Lv, Yanjun Zhang, Ruijun Wang, Zhiying Wang
Objective: The growth and development of secondary hair follicles primarily determine the economic value of cashmere traits, significantly influencing the quality of cashmere fineness. Previous studies have concentrated on the periodic growth regulation of hair follicles in Inner Mongolia cashmere goats (IMCGs), identifying numerous candidate genes that influence cashmere traits. Research on the factors and regulatory mechanisms affecting cashmere fineness in different body parts is currently limited.
Methods: The differences of cashmere fineness traits among different body parts or ages were determined by multiple comparison analysis testing in analysis of variance. RNA-seq and Gene Ontology (GO) & Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were used to assess the differentially expressed genes (DEGs) across different body parts of IMCGs. The candidate genes were validated using quantitative realtime polymerase chain reaction techniques.
Results: Ages and different body parts had significant effects on cashmere diameter of IMCGs (p<0.05). Cashmere diameter was coarsest in the abdomen, but finest in the neck and back. A total of 2,178 DEGs were specifically screened among four body parts based on cashmere diameter. GO and KEGG analyses showed that these DEGs were mainly enriched in signaling pathways related to hair growth, such as MAPK signaling pathway and extracellular matrix-receptor interaction. The expression of MATN2 and CA12 were consistent with the phenotype of cashmere fineness in different body parts.
Conclusion: The differences of cashmere fineness among different body parts of IMCGs were investigated through transcriptome and phenotype analysis, which provide a basis for understanding molecular regulation of cashmere growth in cashmere goats. ATN2 and CA12 have been validated as regulatory genes influencing the heterogeneity of cashmere fineness in various parts of IMCGs.
{"title":"Comparative analysis of skin transcriptome reveals differences of cashmere fineness in different body parts of Inner Mongolia cashmere goats.","authors":"Bohan Zhou, Haijiao Xi, Yongsheng Yu, Jinquan Li, Rui Su, Qi Lv, Yanjun Zhang, Ruijun Wang, Zhiying Wang","doi":"10.5713/ab.25.0119","DOIUrl":"10.5713/ab.25.0119","url":null,"abstract":"<p><strong>Objective: </strong>The growth and development of secondary hair follicles primarily determine the economic value of cashmere traits, significantly influencing the quality of cashmere fineness. Previous studies have concentrated on the periodic growth regulation of hair follicles in Inner Mongolia cashmere goats (IMCGs), identifying numerous candidate genes that influence cashmere traits. Research on the factors and regulatory mechanisms affecting cashmere fineness in different body parts is currently limited.</p><p><strong>Methods: </strong>The differences of cashmere fineness traits among different body parts or ages were determined by multiple comparison analysis testing in analysis of variance. RNA-seq and Gene Ontology (GO) & Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were used to assess the differentially expressed genes (DEGs) across different body parts of IMCGs. The candidate genes were validated using quantitative realtime polymerase chain reaction techniques.</p><p><strong>Results: </strong>Ages and different body parts had significant effects on cashmere diameter of IMCGs (p<0.05). Cashmere diameter was coarsest in the abdomen, but finest in the neck and back. A total of 2,178 DEGs were specifically screened among four body parts based on cashmere diameter. GO and KEGG analyses showed that these DEGs were mainly enriched in signaling pathways related to hair growth, such as MAPK signaling pathway and extracellular matrix-receptor interaction. The expression of MATN2 and CA12 were consistent with the phenotype of cashmere fineness in different body parts.</p><p><strong>Conclusion: </strong>The differences of cashmere fineness among different body parts of IMCGs were investigated through transcriptome and phenotype analysis, which provide a basis for understanding molecular regulation of cashmere growth in cashmere goats. ATN2 and CA12 have been validated as regulatory genes influencing the heterogeneity of cashmere fineness in various parts of IMCGs.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2612-2623"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580752/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144641580","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-06-10DOI: 10.5713/ab.25.0174
Seungwon Yoon, Mrinmoy Ghosh, Myeongyeon Shin, Hyunyong Choi, Cheol-Ho Hyun, Dae Cheol Kim, Shin Ji Lee, Min Jee An, Young-Ok Son, Chang-Gi Hur
Objective: This study aimed to characterize the genomic distribution and amino acid homology of porcine endogenous retrovirus (PERV) subtypes in three pig breeds, Jeju native pigs (JNPs), Duroc, and Landrace.
Methods: Genomic DNA was extracted from hair and ear tissue samples of JNPs, Duroc, and Landrace breeds using DirEx Fast Hair Kit and Exgene Tissue SV Plus kit (GeneAll). Whole-genome resequencing (WGR) was performed by using the Illumina NovaSeq 6000 platform. Sequencing libraries were prepared using the TruSeq Nano DNA Kit and qualitychecked using QUAST and BUSCO, and aligned to the Sus scrofa 11.1 reference genome with Bowtie2. Polymerase chain reaction (PCR) and quantitative real-time PCR were conducted with subtype-specific primers targeting gag, pol, and env regions. Amplicons were verified via agarose gel electrophoresis, purified, and subjected to Sanger sequencing.
Results: WGR revealed breed-specific differences in PERV insertion, with JNPs exhibiting a higher frequency compared with the commercial breeds. PERV-B was the most abundant subtype, followed by PERV-CA and PERV-A, whereas PERV-C was absent in all the breeds. Chromosomal mapping highlighted variations in the localization of PERV, with notable absence on chromosomes 10 and 18. Homology analysis of amino acid sequences of PERV-A, PERV-B, and PERV-CA revealed breed-specific variations in the gag, pol, and env regions, indicating potential differences in viral replication and infectivity. The presence of all PERV subtypes were confirmed using polymerase chain reaction, with PERV-C detected in some Western breeds and all the JNPs analyzed. Sequencing of the PERV-C env region revealed single nucleotide polymorphisms, indicating genetic divergence among pig breeds.
Conclusion: The study findings highlight the need for breed-specific strategies in PERV inactivation for xenotransplantation applications. The distinct chromosomal distribution patterns and functionally significant PERV insertions identified in this study provide a foundation for future research into host-virus interactions and retroviral evolution.
目的:研究猪内源性逆转录病毒(PERV)亚型在济州土猪(JNPs)、杜洛克猪(Duroc)和长白猪(Landrace) 3个猪品种中的基因组分布和氨基酸同源性。方法:使用DirEx™Fast hair Kit和Exgene™tissue SV Plus Kit (GeneAll, Korea)从JNPs、Duroc和Landrace品种的头发和耳朵组织样本中提取基因组DNA。使用Illumina NovaSeq 6000平台进行全基因组重测序。使用TruSeq Nano DNA Kit制备测序文库,使用QUAST和BUSCO进行质量检查,并使用Bowtie2与Sus scrofa 11.1参考基因组比对。采用针对gag、pol和env区域的亚型特异性引物进行PCR和qRT-PCR。扩增子通过琼脂糖凝胶电泳验证,纯化,并进行Sanger测序。结果:WGR揭示了PERV插入的品种特异性差异,与商品品种相比,JNPs的插入频率更高。PERV-B是最丰富的亚型,其次是PERV-CA和PERV-A,而PERV-C在所有品种中都不存在。染色体定位突出了PERV定位的变化,在10号和18号染色体上明显缺失。对PERV-A、PERV-B和PERV-CA氨基酸序列的同源性分析显示,gag、pol和env区域存在品种特异性差异,表明病毒复制和传染性存在潜在差异。采用聚合酶链反应证实了所有PERV亚型的存在,在一些西方品种中检测到PERV- c,并分析了所有JNPs。PERV-C环境区测序显示单核苷酸多态性,表明猪品种之间存在遗传差异。结论:研究结果强调了在异种移植应用中,需要针对不同品种的PERV灭活策略。本研究中发现的独特的染色体分布模式和功能显著的PERV插入为未来研究宿主-病毒相互作用和逆转录病毒进化提供了基础。
{"title":"Characterization of porcine endogenous retrovirus insertion in Jeju native pigs and commercial breeds.","authors":"Seungwon Yoon, Mrinmoy Ghosh, Myeongyeon Shin, Hyunyong Choi, Cheol-Ho Hyun, Dae Cheol Kim, Shin Ji Lee, Min Jee An, Young-Ok Son, Chang-Gi Hur","doi":"10.5713/ab.25.0174","DOIUrl":"10.5713/ab.25.0174","url":null,"abstract":"<p><strong>Objective: </strong>This study aimed to characterize the genomic distribution and amino acid homology of porcine endogenous retrovirus (PERV) subtypes in three pig breeds, Jeju native pigs (JNPs), Duroc, and Landrace.</p><p><strong>Methods: </strong>Genomic DNA was extracted from hair and ear tissue samples of JNPs, Duroc, and Landrace breeds using DirEx Fast Hair Kit and Exgene Tissue SV Plus kit (GeneAll). Whole-genome resequencing (WGR) was performed by using the Illumina NovaSeq 6000 platform. Sequencing libraries were prepared using the TruSeq Nano DNA Kit and qualitychecked using QUAST and BUSCO, and aligned to the Sus scrofa 11.1 reference genome with Bowtie2. Polymerase chain reaction (PCR) and quantitative real-time PCR were conducted with subtype-specific primers targeting gag, pol, and env regions. Amplicons were verified via agarose gel electrophoresis, purified, and subjected to Sanger sequencing.</p><p><strong>Results: </strong>WGR revealed breed-specific differences in PERV insertion, with JNPs exhibiting a higher frequency compared with the commercial breeds. PERV-B was the most abundant subtype, followed by PERV-CA and PERV-A, whereas PERV-C was absent in all the breeds. Chromosomal mapping highlighted variations in the localization of PERV, with notable absence on chromosomes 10 and 18. Homology analysis of amino acid sequences of PERV-A, PERV-B, and PERV-CA revealed breed-specific variations in the gag, pol, and env regions, indicating potential differences in viral replication and infectivity. The presence of all PERV subtypes were confirmed using polymerase chain reaction, with PERV-C detected in some Western breeds and all the JNPs analyzed. Sequencing of the PERV-C env region revealed single nucleotide polymorphisms, indicating genetic divergence among pig breeds.</p><p><strong>Conclusion: </strong>The study findings highlight the need for breed-specific strategies in PERV inactivation for xenotransplantation applications. The distinct chromosomal distribution patterns and functionally significant PERV insertions identified in this study provide a foundation for future research into host-virus interactions and retroviral evolution.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2741-2753"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580762/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144282019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-06-10DOI: 10.5713/ab.25.0122
Jaiesoon Cho
The objective of this review was to describe the enzymatic properties of multiple inositol polyphosphate phosphatase (MINPP1/MIPP) as an unusual member of histidine acid phosphatase, distinct from conventional microbial phytases and their additional physiological functions besides degrading phytate. Considering parameters such as pH activity profile, substrate specificity, catalytic efficiency, and stability, MINPP1 is of merit as a novel phytase source for developing an ideal feed additive supported by functional metagenomics fused with recombinant DNA technology and classical protein engineering. In addition, MINPP1 appears to be involved in some biological activities such as cell survival, stress, lipopolysaccharide and inorganic polyphosphate-induced inflammatory response, milk fatty acid composition-related metabolism and bone-related growth and pathophysiology, which can be important for the production performance of farm animals. Future directions need profound studies revealing the direct effects of MINPP1 on these physiological events.
{"title":"Multiple inositol polyphosphate phosphatase: a hidden phytate digester with bioactive function potential in animal husbandry: review.","authors":"Jaiesoon Cho","doi":"10.5713/ab.25.0122","DOIUrl":"10.5713/ab.25.0122","url":null,"abstract":"<p><p>The objective of this review was to describe the enzymatic properties of multiple inositol polyphosphate phosphatase (MINPP1/MIPP) as an unusual member of histidine acid phosphatase, distinct from conventional microbial phytases and their additional physiological functions besides degrading phytate. Considering parameters such as pH activity profile, substrate specificity, catalytic efficiency, and stability, MINPP1 is of merit as a novel phytase source for developing an ideal feed additive supported by functional metagenomics fused with recombinant DNA technology and classical protein engineering. In addition, MINPP1 appears to be involved in some biological activities such as cell survival, stress, lipopolysaccharide and inorganic polyphosphate-induced inflammatory response, milk fatty acid composition-related metabolism and bone-related growth and pathophysiology, which can be important for the production performance of farm animals. Future directions need profound studies revealing the direct effects of MINPP1 on these physiological events.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2537-2544"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580751/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144282027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-06-04DOI: 10.5713/ab.25.0013
Qian Xu, Lina Yu, Yuling Lin, Aolei Guo, Yang Zhang, Zhe Zhang, Guijun Yan, Haixiang Sun, Guangyi Cao
Objective: Oocyte quality is critical for the stable transmission of genetic information and affects early embryonic development. But the precise mechanisms governing oocyte meiotic progression remains largely unclear. Transcription regulation through chromatin compaction and decompaction is regulated through various chromatin-remodeling complexes such as nucleosome remodeling and histone deacetylation (NuRD) complex. GATAD2B is known to be a component of the NuRD complex but whether GATAD2B regulates chromatin modification in mouse oocyte meiosis remains unclear. We hope to explore the role of GATAD2B in mouse oocyte meiosis.
Methods: In this study, we initially utilized western blot and immunofluorescence to delineate the expression and subcellular localization of GATAD2B during oocyte meiotic maturation. To further elucidate the role of GATAD2B in regulating oocyte meiotic division, we employed the method of microinjection of Gatad2b-specific siRNA to knock down the protein expression of GATAD2B. Subsequently, dynamic changes in oocyte meiotic division were captured in real-time using live-cell imaging with Geri. Additionally, spindle staining, DNA staining, spread analysis, and reanalysis of RNA-seq data were performed to investigate the mechanisms through which GATAD2B regulates oocyte meiotic division.
Results: GATAD2B was stably expressed during oocyte meiosis and was significantly increased during the metaphase II (MII) stage. To further explore the effect of GATAD2B on oocyte meiotic maturation, we observed increased abnormal spindle, severe chromosome misalignment and metaphase I (MI) block in GATAD2B knocked-down (GATAD2B-KD) oocytes. Interestingly, the distribution of microtubule organizing center was abnormal and aneuploidy was significantly increased in GATAD2B-KD oocytes. In addition, some deacetylation-related genes were significantly downregulated and acetylated proteins accumulated abnormally in GATAD2B-KD oocytes.
Conclusion: These findings implicate GATAD2B as a novel regulator of histone deacetylation during oocyte maturation and provide evidence that such deacetylation is required for proper spindle assembly.
{"title":"GATAD2B regulates spindle assembly by affecting protein deacetylation during oocyte meiotic maturation.","authors":"Qian Xu, Lina Yu, Yuling Lin, Aolei Guo, Yang Zhang, Zhe Zhang, Guijun Yan, Haixiang Sun, Guangyi Cao","doi":"10.5713/ab.25.0013","DOIUrl":"10.5713/ab.25.0013","url":null,"abstract":"<p><strong>Objective: </strong>Oocyte quality is critical for the stable transmission of genetic information and affects early embryonic development. But the precise mechanisms governing oocyte meiotic progression remains largely unclear. Transcription regulation through chromatin compaction and decompaction is regulated through various chromatin-remodeling complexes such as nucleosome remodeling and histone deacetylation (NuRD) complex. GATAD2B is known to be a component of the NuRD complex but whether GATAD2B regulates chromatin modification in mouse oocyte meiosis remains unclear. We hope to explore the role of GATAD2B in mouse oocyte meiosis.</p><p><strong>Methods: </strong>In this study, we initially utilized western blot and immunofluorescence to delineate the expression and subcellular localization of GATAD2B during oocyte meiotic maturation. To further elucidate the role of GATAD2B in regulating oocyte meiotic division, we employed the method of microinjection of Gatad2b-specific siRNA to knock down the protein expression of GATAD2B. Subsequently, dynamic changes in oocyte meiotic division were captured in real-time using live-cell imaging with Geri. Additionally, spindle staining, DNA staining, spread analysis, and reanalysis of RNA-seq data were performed to investigate the mechanisms through which GATAD2B regulates oocyte meiotic division.</p><p><strong>Results: </strong>GATAD2B was stably expressed during oocyte meiosis and was significantly increased during the metaphase II (MII) stage. To further explore the effect of GATAD2B on oocyte meiotic maturation, we observed increased abnormal spindle, severe chromosome misalignment and metaphase I (MI) block in GATAD2B knocked-down (GATAD2B-KD) oocytes. Interestingly, the distribution of microtubule organizing center was abnormal and aneuploidy was significantly increased in GATAD2B-KD oocytes. In addition, some deacetylation-related genes were significantly downregulated and acetylated proteins accumulated abnormally in GATAD2B-KD oocytes.</p><p><strong>Conclusion: </strong>These findings implicate GATAD2B as a novel regulator of histone deacetylation during oocyte maturation and provide evidence that such deacetylation is required for proper spindle assembly.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2635-2650"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580745/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144224062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-07-11DOI: 10.5713/ab.25.0110
Zhuangzhuang Qiu, Koo Bok Chin
Objective: This study investigated the antioxidant activities of lotus root, Nelumbo nucifera, by producing oven-dried lotus root powder (ODLRP) and powdered ethanolic extracts of the ODLRP produced using different concentrations of ethanol (25%, 50%, 75%, and 100%) for various times (0-8 h). The effect of ODLRP and an ethanolic extract powder produced by an extraction of ODLRP with 50% ethanol for 4 h (ODLRP_E50%) in low-fat boiled and smoked pork sausages were investigated.
Methods: Antioxidant activities of the ODLRP and the ethanol extracts produced from the ODLRP under different extraction conditions were analyzed. Then, the ODLRP and ODLRP_E50% extract powder were added to pork sausages at concentrations of 1% and 0.1%, respectively, to determine their effects on the physicochemical properties, and antibacterial and antioxidant activities the sausages.
Results: The ODLRP ethanol extract powder exhibited antioxidant activity, regardless of extraction time. The pH value of the boiled pork sausages containing 1% ODLRP was lower than that of the control sausages (CS). The color value demonstrated that the lightness of the boiled and smoked sausages decreased with the addition of 1% ODLRP or 0.1% ODLRP_E50% compared with the CS, but their redness and yellowness increased. The hardness and gumminess of smoked sausages with 0.1% ODLRP_E50% were lower than those of the CS (p<0.05). However, the springiness of the boiled sausages containing 0.1% ODLRP_E50% decreased. Boiled sausages treated with ODLRP and ODLRP_E50% had lower thiobarbituric acid reactive substances compared with the CS from day 14 of storage. Moreover, the boiled sausages containing 1% sausages containing 0.1% ODLRP_E50% extract powder exhibited an extended shelf-life compared with the CS.
Conclusion: Ethanol extraction conditions of ODLRP and cooking methods of low-fat pork sausages are critical factors affecting the quality and shelf-life of sausages.
{"title":"Evaluation of product quality of low-fat sausage containing lotus rhizome root powders as affected by cooking method during storage.","authors":"Zhuangzhuang Qiu, Koo Bok Chin","doi":"10.5713/ab.25.0110","DOIUrl":"10.5713/ab.25.0110","url":null,"abstract":"<p><strong>Objective: </strong>This study investigated the antioxidant activities of lotus root, Nelumbo nucifera, by producing oven-dried lotus root powder (ODLRP) and powdered ethanolic extracts of the ODLRP produced using different concentrations of ethanol (25%, 50%, 75%, and 100%) for various times (0-8 h). The effect of ODLRP and an ethanolic extract powder produced by an extraction of ODLRP with 50% ethanol for 4 h (ODLRP_E50%) in low-fat boiled and smoked pork sausages were investigated.</p><p><strong>Methods: </strong>Antioxidant activities of the ODLRP and the ethanol extracts produced from the ODLRP under different extraction conditions were analyzed. Then, the ODLRP and ODLRP_E50% extract powder were added to pork sausages at concentrations of 1% and 0.1%, respectively, to determine their effects on the physicochemical properties, and antibacterial and antioxidant activities the sausages.</p><p><strong>Results: </strong>The ODLRP ethanol extract powder exhibited antioxidant activity, regardless of extraction time. The pH value of the boiled pork sausages containing 1% ODLRP was lower than that of the control sausages (CS). The color value demonstrated that the lightness of the boiled and smoked sausages decreased with the addition of 1% ODLRP or 0.1% ODLRP_E50% compared with the CS, but their redness and yellowness increased. The hardness and gumminess of smoked sausages with 0.1% ODLRP_E50% were lower than those of the CS (p<0.05). However, the springiness of the boiled sausages containing 0.1% ODLRP_E50% decreased. Boiled sausages treated with ODLRP and ODLRP_E50% had lower thiobarbituric acid reactive substances compared with the CS from day 14 of storage. Moreover, the boiled sausages containing 1% sausages containing 0.1% ODLRP_E50% extract powder exhibited an extended shelf-life compared with the CS.</p><p><strong>Conclusion: </strong>Ethanol extraction conditions of ODLRP and cooking methods of low-fat pork sausages are critical factors affecting the quality and shelf-life of sausages.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2767-2778"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580750/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144641585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-06-24DOI: 10.5713/ab.25.0259
Patrick Kofi Makafui Tecku, Dong Chen, Kai Wang, Shixin Yu, Jiamiao Chen, Guoqing Tang
Objective: The Neijiang indigenous pig breed of China and the Western Large White pig breed have unique meat quality and carcass characteristics. However, the genetic factors and mechanisms influencing their distinct meat and carcass traits are still not well understood. Therefore, using weighted gene co-expression network analysis (WGCNA), this study aimed to identify key genes influencing these traits.
Methods: Transcriptome data from 17 Neijiang and 22 Large White pigs, along with their carcass weight, backfat thickness, eye muscle area, meat color, and muscle pH phenotypic data, were analyzed using WGCNA. A total of 9,249 genes were used to construct a weighted gene co-expression network.
Results: Twenty-two co-expression gene modules were identified. Genes in the top modules were enriched in processes relevant to carcass and meat quality, such as protein transport. Further analysis identified six key genes, including HSPH1, HSPA4, DNAJA4, MRPL3, SEC63, and SRP54, for the Neijiang breed. Also, five key genes, consisting of EP300, SETD2, NIPBL, NAT10, and VCP, were identified for the Large White population. These genes were involved in biological processes related to mitochondrial function, protein targeting, chromatin organization, and morphogenesis.
Conclusion: The findings from this study elucidate the regulatory mechanisms influencing the carcass and meat characteristics of the Neijiang and Large White pigs. The key genes could serve as potential biomarkers for enhancing breeding strategies aimed at improving pork quality.
{"title":"Comprehensive co-expression analysis reveals candidate regulatory genes associated with carcass and meat quality traits in Neijiang and Large White pigs.","authors":"Patrick Kofi Makafui Tecku, Dong Chen, Kai Wang, Shixin Yu, Jiamiao Chen, Guoqing Tang","doi":"10.5713/ab.25.0259","DOIUrl":"10.5713/ab.25.0259","url":null,"abstract":"<p><strong>Objective: </strong>The Neijiang indigenous pig breed of China and the Western Large White pig breed have unique meat quality and carcass characteristics. However, the genetic factors and mechanisms influencing their distinct meat and carcass traits are still not well understood. Therefore, using weighted gene co-expression network analysis (WGCNA), this study aimed to identify key genes influencing these traits.</p><p><strong>Methods: </strong>Transcriptome data from 17 Neijiang and 22 Large White pigs, along with their carcass weight, backfat thickness, eye muscle area, meat color, and muscle pH phenotypic data, were analyzed using WGCNA. A total of 9,249 genes were used to construct a weighted gene co-expression network.</p><p><strong>Results: </strong>Twenty-two co-expression gene modules were identified. Genes in the top modules were enriched in processes relevant to carcass and meat quality, such as protein transport. Further analysis identified six key genes, including HSPH1, HSPA4, DNAJA4, MRPL3, SEC63, and SRP54, for the Neijiang breed. Also, five key genes, consisting of EP300, SETD2, NIPBL, NAT10, and VCP, were identified for the Large White population. These genes were involved in biological processes related to mitochondrial function, protein targeting, chromatin organization, and morphogenesis.</p><p><strong>Conclusion: </strong>The findings from this study elucidate the regulatory mechanisms influencing the carcass and meat characteristics of the Neijiang and Large White pigs. The key genes could serve as potential biomarkers for enhancing breeding strategies aimed at improving pork quality.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2568-2583"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580783/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144504657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: Inner Mongolia cashmere goats are superior indigenous breeds developed through long-term natural selection and systematic artificial selection, which have experienced a certain intensity of selection pressure during the breeding process, leading to bipolar differentiation trends in cashmere traits. Therefore, identifying genomic selection signatures associated with cashmere traits in Inner Mongolia cashmere goats is crucial for breeding high-quality cashmere-producing goats.
Methods: To unravel the genetic basis of cashmere traits, this study stratified 375 Inner Mongolia cashmere goats into eight subgroups based on breeding values for cashmere traits: high-yield vs low-yield cashmere types (HYCG vs LYCG), fine vs coarse cashmere types (FCG vs CCG), long vs short cashmere types (LCG vs SCG), and long vs short fleece types (LFCG vs SFCG). Whole-genome resequencing was performed for genotyping, followed by detection of selection signatures.
Results: Results revealed 144, 158, 147, and 147 high-frequency run of homozygosity (ROH) regions in HYCG, FCG, LCG, and LFCG subgroups, respectively, annotating to 515, 565, 510, and 521 genes. Additionally, genomic regions under positive selection were identified using Fst, θπ ratios, and XP-EHH methods, with overlapping regions detected by ≥2 methods defined as candidate regions. Gene annotation identified 777, 660, 712, and 726 candidate genes in HYCG vs LYCG, FCG vs CCG, LCG vs SCG, and LFCG vs SFCG comparisons, respectively. These genes were enriched in 3,051 GO terms and 318 KEGG pathways, including Hippo, MAPK, Wnt, PI3K-Akt, and mTOR signaling pathways associated with cashmere growth and development, involving genes such as LGR6, RUNX2, IGF1R, FGF9, and TCF7L1.
Conclusion: In this study, we employed four complementary approaches, including ROHs, Fst, θπ ratios, and XP-EHH, to identify genomic signatures of selection for cashmere traits in Inner Mongolia cashmere goats. These findings provide valuable insights for improving cashmere production performance and developing novel strains with highquality cashmere in Inner Mongolia cashmere goats.
目的:内蒙古绒山羊是经过长期自然选择和系统人工选择而发展起来的优良地方品种,在育种过程中经历了一定程度的选择压力,羊绒性状呈现两极分化趋势。因此,鉴定与内蒙古绒山羊羊绒性状相关的基因组选择特征对于培育优质绒山羊至关重要。方法:为了揭示羊绒性状的遗传基础,本研究根据羊绒性状的育种价值将375只内蒙古绒山羊分为8个亚群:高产与低产羊绒类型(HYCG vs LYCG)、细绒与粗绒类型(FCG vs CCG)、长绒与短绒类型(LCG vs SCG)、长绒与短绒类型(LFCG vs SFCG)。进行全基因组重测序进行基因分型,然后检测选择特征。结果:在HYCG、FCG、LCG和LFCG亚群中分别发现144、158、147和147个高频ROH区域,分别注释到515、565、510和521个基因。此外,采用FST、θπ比和XP-EHH方法鉴定阳性选择的基因组区域,通过≥2种方法检测到的重叠区域定义为候选区域。基因注释在HYCG与LYCG、FCG与CCG、LCG与SCG、LFCG与SFCG的比较中分别鉴定出777、660、712和726个候选基因。这些基因在3051个GO项和318个KEGG通路中富集,包括与羊绒生长发育相关的Hippo、MAPK、Wnt、PI3K-Akt和mTOR信号通路,涉及LGR6、RUNX2、IGF1R、CCNE2和SEH1L等基因。结论:本研究采用ROHs、FST、θπ比和XP-EHH四种互补方法,确定了内蒙古绒山羊羊绒性状选择的基因组特征。这些研究结果为提高内蒙古绒山羊的生产性能和培育优质绒山羊新品种提供了有价值的见解。
{"title":"Whole-genome selection signatures identified candidate genes associated with cashmere traits in Inner Mongolia cashmere goats.","authors":"Youjun Rong, Xiaofang Ao, Mingxuan Han, Qincheng Xia, Fangzheng Shang, Qi Lv, Zhiying Wang, Rui Su, Yanhong Zhao, Yanjun Zhang, Ruijun Wang","doi":"10.5713/ab.25.0252","DOIUrl":"10.5713/ab.25.0252","url":null,"abstract":"<p><strong>Objective: </strong>Inner Mongolia cashmere goats are superior indigenous breeds developed through long-term natural selection and systematic artificial selection, which have experienced a certain intensity of selection pressure during the breeding process, leading to bipolar differentiation trends in cashmere traits. Therefore, identifying genomic selection signatures associated with cashmere traits in Inner Mongolia cashmere goats is crucial for breeding high-quality cashmere-producing goats.</p><p><strong>Methods: </strong>To unravel the genetic basis of cashmere traits, this study stratified 375 Inner Mongolia cashmere goats into eight subgroups based on breeding values for cashmere traits: high-yield vs low-yield cashmere types (HYCG vs LYCG), fine vs coarse cashmere types (FCG vs CCG), long vs short cashmere types (LCG vs SCG), and long vs short fleece types (LFCG vs SFCG). Whole-genome resequencing was performed for genotyping, followed by detection of selection signatures.</p><p><strong>Results: </strong>Results revealed 144, 158, 147, and 147 high-frequency run of homozygosity (ROH) regions in HYCG, FCG, LCG, and LFCG subgroups, respectively, annotating to 515, 565, 510, and 521 genes. Additionally, genomic regions under positive selection were identified using Fst, θπ ratios, and XP-EHH methods, with overlapping regions detected by ≥2 methods defined as candidate regions. Gene annotation identified 777, 660, 712, and 726 candidate genes in HYCG vs LYCG, FCG vs CCG, LCG vs SCG, and LFCG vs SFCG comparisons, respectively. These genes were enriched in 3,051 GO terms and 318 KEGG pathways, including Hippo, MAPK, Wnt, PI3K-Akt, and mTOR signaling pathways associated with cashmere growth and development, involving genes such as LGR6, RUNX2, IGF1R, FGF9, and TCF7L1.</p><p><strong>Conclusion: </strong>In this study, we employed four complementary approaches, including ROHs, Fst, θπ ratios, and XP-EHH, to identify genomic signatures of selection for cashmere traits in Inner Mongolia cashmere goats. These findings provide valuable insights for improving cashmere production performance and developing novel strains with highquality cashmere in Inner Mongolia cashmere goats.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":"2597-2611"},"PeriodicalIF":2.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580777/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144641590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}