Guangfan Liu, Fen Su, Xingyue Zou, Xingming Yang, Liang Tian
Objective: This study aimed to assess the impact of a prolonged photoperiod on the growth performance and lipid metabolism of weaned piglets.
Methods: Twenty-four piglets weaned at 28 days of age were randomly dichotomized into two groups that were alternatively subjected to either long photoperiod (LP) group (16L:8D) or short photoperiod (SP) group (10L:14D) for 42days. Four replicates of three animals per replicates were used per experimental treatment.
Results: Our results demonstrated that prolonged photoperiod increased piglet body weight, average daily weight gain (ADG), backfat thickness (BF), backfat index during the nursery period, and increased ADG, average daily feed intake (ADFI), and decreased the F/G of piglets during the experiment days 29 to 42. Meanwhile, we observed LP piglets' plasma melatonin, growth hormone and serotonin levels were decreased at 14 d and 42 d compared to SP piglets. Moreover, up-regulated mRNA or protein expression of PPARγ and CEBPα, and lower mRNA or protein expression of MTR1, ATGL, HSL, PPARα, and CPT1α, were observed in back subcutaneous fat (BSF) of LP group compared with that of SP group. Significant increases were observed in the mRNA or protein contents of lipogenic genes, including C/EBPα, SREBP-1c, ACCα, and FAS, in the liver of LP piglets, whereas CPT1α and ACOX1 mRNA levels and PPARα and MTR1 protein expression were significantly down-regulated in LP group compared to SP group. Extended photoperiod also increased lipid content in longissimus dorsi muscle (LDM) that was associated with higher mRNA or protein levels of SREBP-1c, ACCα, FAS, Pref1, and LPL, decreased mRNA or protein contents of LeptinR, MTR1, HSL, and ACOX1.
Conclusion: Together, these findings suggest that there is an advantage, in terms of growth performance and fat deposition, in imposing a prolonged light program (16-h light/day) on nursery piglets to alleviate the negative aspects of weaning stress.
{"title":"Impact of an extended light regimen imposed during nursery period on the performance and lipid metabolism of weanling pigs.","authors":"Guangfan Liu, Fen Su, Xingyue Zou, Xingming Yang, Liang Tian","doi":"10.5713/ab.24.0270","DOIUrl":"https://doi.org/10.5713/ab.24.0270","url":null,"abstract":"<p><strong>Objective: </strong>This study aimed to assess the impact of a prolonged photoperiod on the growth performance and lipid metabolism of weaned piglets.</p><p><strong>Methods: </strong>Twenty-four piglets weaned at 28 days of age were randomly dichotomized into two groups that were alternatively subjected to either long photoperiod (LP) group (16L:8D) or short photoperiod (SP) group (10L:14D) for 42days. Four replicates of three animals per replicates were used per experimental treatment.</p><p><strong>Results: </strong>Our results demonstrated that prolonged photoperiod increased piglet body weight, average daily weight gain (ADG), backfat thickness (BF), backfat index during the nursery period, and increased ADG, average daily feed intake (ADFI), and decreased the F/G of piglets during the experiment days 29 to 42. Meanwhile, we observed LP piglets' plasma melatonin, growth hormone and serotonin levels were decreased at 14 d and 42 d compared to SP piglets. Moreover, up-regulated mRNA or protein expression of PPARγ and CEBPα, and lower mRNA or protein expression of MTR1, ATGL, HSL, PPARα, and CPT1α, were observed in back subcutaneous fat (BSF) of LP group compared with that of SP group. Significant increases were observed in the mRNA or protein contents of lipogenic genes, including C/EBPα, SREBP-1c, ACCα, and FAS, in the liver of LP piglets, whereas CPT1α and ACOX1 mRNA levels and PPARα and MTR1 protein expression were significantly down-regulated in LP group compared to SP group. Extended photoperiod also increased lipid content in longissimus dorsi muscle (LDM) that was associated with higher mRNA or protein levels of SREBP-1c, ACCα, FAS, Pref1, and LPL, decreased mRNA or protein contents of LeptinR, MTR1, HSL, and ACOX1.</p><p><strong>Conclusion: </strong>Together, these findings suggest that there is an advantage, in terms of growth performance and fat deposition, in imposing a prolonged light program (16-h light/day) on nursery piglets to alleviate the negative aspects of weaning stress.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jun Young Mun, Habeeb Tajudeen, Sanghun Ha, Jun Hyung Lee, Jin Soo Kim, Min Ju Kim
Objective: This study evaluates the collaborative effect of exogenous enzyme blend and dietary nutrient density on the performance of broiler chicken.
Methods: A total of 600 Ross 308 broiler chickens with same average initial body weight were randomly assigned to 5 treatments. Each treatment contained 8 replicates, and 15 birds per replicate. The diets included a control (CON) starter/finisher (S/F) diet with metabolizable energy (ME) 3,100/3,200 in Kcal/kg and crude protein (CP) content 22.0.0/20.00 in % as (S/F 3,100/3,200 Kcal/kg + CP, 22.00/20.00 %). S/F with ME 3,060/3,150 Kcal/kg + CP 21.50/19.50 % with and without the exogenous enzyme blend as (S/F 3,060/3,150 Kcal/kg + 21.50/19.50 % with, and without the exogenous enzyme blend), and lastly, S/F with ME 3,010/3,100 Kcal/kg + CP 21.50/19.50 % with, and without the exogenous enzyme blend as (S/F 3,010/3,100 Kcal/kg + 21.50/19.50 % with, and without the exogenous enzyme blend). The impact of the treatments was tested on growth performance, nutrient digestibility, blood metabolites, intestinal microflora, and morphology of broiler chicken.
Key results: The inclusion of exogenous enzyme blend in the nutrient-deficient diet S/F 3,060/3,150 + 21.50/19.50 increased (p<0.05) broilers body weight, feed conversion ratio, nutrient digestibility of crude protein, gross energy, phosphorus, and blood phosphorus, with tendency (p<0.10) of higher dry matter. The treatment also showed lower (p<0.05) total anaerobic bacteria, coliform, and higher (p<0.05) villus height (VH) in the jejunum, with tendencies (p<0.10) of higher lactobacillus in the ileum and caecum, and higher tendency (p<0.10) of VH in duodenum and ileum.
Conclusion: We concluded that the improved performance could be attributed to the potency of S/F 3,060/3,150 + 21.50/19.50 supplemented with 0.05% of the multienzyme to reduce the level of potential pathogenic bacteria with an increased level of positive bacteria, which in turn creates an enabling intestinal villi structure in broiler chicken.
{"title":"Nutrient density and the collaborative impact of exogenous enzyme blend on the performance of broiler chicken.","authors":"Jun Young Mun, Habeeb Tajudeen, Sanghun Ha, Jun Hyung Lee, Jin Soo Kim, Min Ju Kim","doi":"10.5713/ab.24.0233","DOIUrl":"https://doi.org/10.5713/ab.24.0233","url":null,"abstract":"<p><strong>Objective: </strong>This study evaluates the collaborative effect of exogenous enzyme blend and dietary nutrient density on the performance of broiler chicken.</p><p><strong>Methods: </strong>A total of 600 Ross 308 broiler chickens with same average initial body weight were randomly assigned to 5 treatments. Each treatment contained 8 replicates, and 15 birds per replicate. The diets included a control (CON) starter/finisher (S/F) diet with metabolizable energy (ME) 3,100/3,200 in Kcal/kg and crude protein (CP) content 22.0.0/20.00 in % as (S/F 3,100/3,200 Kcal/kg + CP, 22.00/20.00 %). S/F with ME 3,060/3,150 Kcal/kg + CP 21.50/19.50 % with and without the exogenous enzyme blend as (S/F 3,060/3,150 Kcal/kg + 21.50/19.50 % with, and without the exogenous enzyme blend), and lastly, S/F with ME 3,010/3,100 Kcal/kg + CP 21.50/19.50 % with, and without the exogenous enzyme blend as (S/F 3,010/3,100 Kcal/kg + 21.50/19.50 % with, and without the exogenous enzyme blend). The impact of the treatments was tested on growth performance, nutrient digestibility, blood metabolites, intestinal microflora, and morphology of broiler chicken.</p><p><strong>Key results: </strong>The inclusion of exogenous enzyme blend in the nutrient-deficient diet S/F 3,060/3,150 + 21.50/19.50 increased (p<0.05) broilers body weight, feed conversion ratio, nutrient digestibility of crude protein, gross energy, phosphorus, and blood phosphorus, with tendency (p<0.10) of higher dry matter. The treatment also showed lower (p<0.05) total anaerobic bacteria, coliform, and higher (p<0.05) villus height (VH) in the jejunum, with tendencies (p<0.10) of higher lactobacillus in the ileum and caecum, and higher tendency (p<0.10) of VH in duodenum and ileum.</p><p><strong>Conclusion: </strong>We concluded that the improved performance could be attributed to the potency of S/F 3,060/3,150 + 21.50/19.50 supplemented with 0.05% of the multienzyme to reduce the level of potential pathogenic bacteria with an increased level of positive bacteria, which in turn creates an enabling intestinal villi structure in broiler chicken.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: This work was to investigate the effect of using Azolla (Azolla microphylla) leaf meal and phytonutrient powder on rumen fermentation efficiency and nutrient degradability using in vitro technique.
Methods: All respective treatments were imposed in a 2 × 4 × 2 Factorial arrangements according to a completely randomized design (CRD). The first factor was two ratios of roughage to concentrate (R:C at 60:40, and 40:60), the second factor was Azolla (Azolla microphylla) powder (AMP) supplementation levels (0%, 3%, 6%, and 9% of the total substrate) and the third factor was Turmeric (Curcuma longa) powder (TUP) supplementation levels (0% and 2% of the total substrate).
Results: Cumulative gas production at 96 h, was affected by R:C and numerically increased by AMP and TUP supplementation (p<0.05). Gas production kinetics increased with the increasing ratio of concentrate and AMP supplementation whereas TUP supplement reduced gas production. In vitro DM degradability was remarkably increased (p<0.05) by the R:C ratio, AMP and TUP supplementation. However, increasing R:C ratio, AMP and TUP supplementation resulted in the concentration of propionate (C3) significantly increasing (p<0.05). Acetate (C2), C2:C3 ratio, and protozoal population were improved (p<0.05), while the methane production decreased.
Conclusion: Under this study, the results were obtained under the supplementation level of 9% AMP and 2% TUP of total substrate, hence, the combined use is potentially beneficial. These results revealed a potential use of AMP and TUP as a supplement to improve rumen fermentation for ruminant feeding. Nevertheless, in vivo feeding trials should be further investigated using AMP and TUP as a source of protein and phytonutrient.
{"title":"Using Azolla (Azolla microphylla) leaf meal and phytonutrient powder on rumen fermentation efficiency and nutrient degradability using in vitro technique.","authors":"Burarat Phesatcha, Kampanat Phesatcha, Thiwakorn Ampapon, Metha Wanapat","doi":"10.5713/ab.24.0379","DOIUrl":"https://doi.org/10.5713/ab.24.0379","url":null,"abstract":"<p><strong>Objective: </strong>This work was to investigate the effect of using Azolla (Azolla microphylla) leaf meal and phytonutrient powder on rumen fermentation efficiency and nutrient degradability using in vitro technique.</p><p><strong>Methods: </strong>All respective treatments were imposed in a 2 × 4 × 2 Factorial arrangements according to a completely randomized design (CRD). The first factor was two ratios of roughage to concentrate (R:C at 60:40, and 40:60), the second factor was Azolla (Azolla microphylla) powder (AMP) supplementation levels (0%, 3%, 6%, and 9% of the total substrate) and the third factor was Turmeric (Curcuma longa) powder (TUP) supplementation levels (0% and 2% of the total substrate).</p><p><strong>Results: </strong>Cumulative gas production at 96 h, was affected by R:C and numerically increased by AMP and TUP supplementation (p<0.05). Gas production kinetics increased with the increasing ratio of concentrate and AMP supplementation whereas TUP supplement reduced gas production. In vitro DM degradability was remarkably increased (p<0.05) by the R:C ratio, AMP and TUP supplementation. However, increasing R:C ratio, AMP and TUP supplementation resulted in the concentration of propionate (C3) significantly increasing (p<0.05). Acetate (C2), C2:C3 ratio, and protozoal population were improved (p<0.05), while the methane production decreased.</p><p><strong>Conclusion: </strong>Under this study, the results were obtained under the supplementation level of 9% AMP and 2% TUP of total substrate, hence, the combined use is potentially beneficial. These results revealed a potential use of AMP and TUP as a supplement to improve rumen fermentation for ruminant feeding. Nevertheless, in vivo feeding trials should be further investigated using AMP and TUP as a source of protein and phytonutrient.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557024","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jun Sik Woo, Sun Sik Jang, Jeong Hoon Kim, Hong Gu Lee, Keun-Kyu Park
Objective: This study evaluated the effects of increased levels of dietary total digestible nutrient (TDN) and crude protein (CP) using protected fat (PF), soybean meal (SB), and heat-treated soybean meal (HSB) on performance, physiological parameters, and behavioral measurements of early-fattening Hanwoo steers under heat stress conditions.
Methods: Thirty-six steers (480.9 ± 58.6 kg, 15.9 ± 1.4 months) were assigned to 4 treatments: Control (TDN 75%, CP 15%, rumen degradable protein [RDP]:rumen undegradable protein [RUP]=62:48), PF (TDN 82.5%, CP 15%, RDP:RUP=62:48), PF+SB (TDN 82.5%, CP 16.5%, RDP:RUP=62:48), and PF+SB+HSB (TDN 82.5%, CP 16.5%, RDP:RUP=48:52) for a total of 16 weeks with division of 4 weeks. The average temperature-humidity index (THI) was 82.9 (1st; Moderate), 76.9 (2nd; Mild), 70.9 (3rd; Comfort), and 65.8 (4th period; Comfort).
Results: Dry matter intake during whole period did not differ among treatments but decreased by 34% and 19%, respectively during 1st and 2nd compared to 4th. Average daily gain (ADG) of PF+SB+HSB was higher (p<0.05) than that of Control during the 1st period, and those of both PF+SB and PF+SB+HSB were higher (p<0.05) than Control during the 2nd. The ADG during whole period was in the order of PF+SB+HSB (1.23), PF+SB (1.18), PF (1.11), Control (0.98 kg/d) (p<0.05). As THI increased, rectal temperature and all blood parameters increased, while blood glucose levels decreased (p<0.05). Behavioral changes during 1st period compared to 3rd included decreases in Lying (24%), Walking (48%), and Eating (40%), and increases in Total standing (50%) and Drinking (43%) (p<0.05). Rumination during standing was 38% higher, and Rumination during lying was 32% lower (p<0.05).
Conclusion: This study demonstrates 10% of increased levels of dietary TDN using PF and CP considering RUP can prevent performance reduction in early-fattening of heat-stressed Hanwoo steers and have positive effects on performance recovery from post-heat stress.
{"title":"Dietary effects of protected fat, soybean meal, and heat-treated soybean meal on performance, physiological parameters, and behavioral measurements of early-fattening Hanwoo steers under heat stress conditions.","authors":"Jun Sik Woo, Sun Sik Jang, Jeong Hoon Kim, Hong Gu Lee, Keun-Kyu Park","doi":"10.5713/ab.24.0236","DOIUrl":"https://doi.org/10.5713/ab.24.0236","url":null,"abstract":"<p><strong>Objective: </strong>This study evaluated the effects of increased levels of dietary total digestible nutrient (TDN) and crude protein (CP) using protected fat (PF), soybean meal (SB), and heat-treated soybean meal (HSB) on performance, physiological parameters, and behavioral measurements of early-fattening Hanwoo steers under heat stress conditions.</p><p><strong>Methods: </strong>Thirty-six steers (480.9 ± 58.6 kg, 15.9 ± 1.4 months) were assigned to 4 treatments: Control (TDN 75%, CP 15%, rumen degradable protein [RDP]:rumen undegradable protein [RUP]=62:48), PF (TDN 82.5%, CP 15%, RDP:RUP=62:48), PF+SB (TDN 82.5%, CP 16.5%, RDP:RUP=62:48), and PF+SB+HSB (TDN 82.5%, CP 16.5%, RDP:RUP=48:52) for a total of 16 weeks with division of 4 weeks. The average temperature-humidity index (THI) was 82.9 (1st; Moderate), 76.9 (2nd; Mild), 70.9 (3rd; Comfort), and 65.8 (4th period; Comfort).</p><p><strong>Results: </strong>Dry matter intake during whole period did not differ among treatments but decreased by 34% and 19%, respectively during 1st and 2nd compared to 4th. Average daily gain (ADG) of PF+SB+HSB was higher (p<0.05) than that of Control during the 1st period, and those of both PF+SB and PF+SB+HSB were higher (p<0.05) than Control during the 2nd. The ADG during whole period was in the order of PF+SB+HSB (1.23), PF+SB (1.18), PF (1.11), Control (0.98 kg/d) (p<0.05). As THI increased, rectal temperature and all blood parameters increased, while blood glucose levels decreased (p<0.05). Behavioral changes during 1st period compared to 3rd included decreases in Lying (24%), Walking (48%), and Eating (40%), and increases in Total standing (50%) and Drinking (43%) (p<0.05). Rumination during standing was 38% higher, and Rumination during lying was 32% lower (p<0.05).</p><p><strong>Conclusion: </strong>This study demonstrates 10% of increased levels of dietary TDN using PF and CP considering RUP can prevent performance reduction in early-fattening of heat-stressed Hanwoo steers and have positive effects on performance recovery from post-heat stress.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Deok Yun Kim, Kang Hyeon Kim, Eun Cheol Lee, Ju Kyoung Oh, Min Ah Park, Dong Yong Kil
Objective: The current study aimed to investigate the effect of dietary supplementation of xylanase alone or combination of xylanase and β-glucanase in high non-starch polysaccharides (NSP) diets with low energy on growth performance, meat quality, intestinal measurements, stress responses, and energy and nutrient utilization in broiler chickens.
Methods: A total of four hundred 8-d-old Ross 308 broiler chickens were randomly allotted to 1 of 4 treatment groups with 10 replicates. A positive control (PC) diet was formulated with adequate energy and nutrients, whereas a negative control (NC) diet had 100 kcal/kg less AMEn than the PC diet with increasing inclusion of high NSP ingredients. Two additional diets were produced by supplementing 0.1% xylanase alone or 0.1% xylanase and β-glucanase mixture in the NC diet. Experiments lasted for 27 d.
Results: Birds fed PC diets had less (p<0.05) FCR than those fed NC diets. Birds fed NC diets supplemented with xylanase alone or combination of xylanase and β-glucanase had less (p<0.05) FCR than those fed NC diets. Dietary supplementation of xylanase alone in NC diets exhibited the highest (p<0.05) breast meat pH among dietary treatments. Birds fed PC diets or NC diets supplemented with xylanase and β-glucanase combination exhibited greater (p<0.05) VH:CD ratio than those fed NC diets. Dietary supplementation of xylanase alone and combination of xylanase and β-glucanase in NC diets decreased (p<0.05) ileal digesta viscosity and increased (p<0.05) xylo-oligosaccharide concentrations in the gastrointestinal tract (GIT) compared with NC diets without affecting energy and nutrient utilization in NC diets.
Conclusion: Dietary supplementation of xylanase in high NSP diets with low energy concentrations improves growth performance by decreasing digesta viscosity and increasing concentrations of xylo-oligosaccharides in the GIT of broiler chickens. However, little additional benefits of β-glucanase supplementation in combination with xylanase are identified for broiler chickens.
{"title":"Effect of dietary supplementation of xylanase alone or combination of xylanase and β-glucanase on growth performance, meat quality, intestinal measurements, and nutrient utilization in broiler chickens.","authors":"Deok Yun Kim, Kang Hyeon Kim, Eun Cheol Lee, Ju Kyoung Oh, Min Ah Park, Dong Yong Kil","doi":"10.5713/ab.24.0430","DOIUrl":"https://doi.org/10.5713/ab.24.0430","url":null,"abstract":"<p><strong>Objective: </strong>The current study aimed to investigate the effect of dietary supplementation of xylanase alone or combination of xylanase and β-glucanase in high non-starch polysaccharides (NSP) diets with low energy on growth performance, meat quality, intestinal measurements, stress responses, and energy and nutrient utilization in broiler chickens.</p><p><strong>Methods: </strong>A total of four hundred 8-d-old Ross 308 broiler chickens were randomly allotted to 1 of 4 treatment groups with 10 replicates. A positive control (PC) diet was formulated with adequate energy and nutrients, whereas a negative control (NC) diet had 100 kcal/kg less AMEn than the PC diet with increasing inclusion of high NSP ingredients. Two additional diets were produced by supplementing 0.1% xylanase alone or 0.1% xylanase and β-glucanase mixture in the NC diet. Experiments lasted for 27 d.</p><p><strong>Results: </strong>Birds fed PC diets had less (p<0.05) FCR than those fed NC diets. Birds fed NC diets supplemented with xylanase alone or combination of xylanase and β-glucanase had less (p<0.05) FCR than those fed NC diets. Dietary supplementation of xylanase alone in NC diets exhibited the highest (p<0.05) breast meat pH among dietary treatments. Birds fed PC diets or NC diets supplemented with xylanase and β-glucanase combination exhibited greater (p<0.05) VH:CD ratio than those fed NC diets. Dietary supplementation of xylanase alone and combination of xylanase and β-glucanase in NC diets decreased (p<0.05) ileal digesta viscosity and increased (p<0.05) xylo-oligosaccharide concentrations in the gastrointestinal tract (GIT) compared with NC diets without affecting energy and nutrient utilization in NC diets.</p><p><strong>Conclusion: </strong>Dietary supplementation of xylanase in high NSP diets with low energy concentrations improves growth performance by decreasing digesta viscosity and increasing concentrations of xylo-oligosaccharides in the GIT of broiler chickens. However, little additional benefits of β-glucanase supplementation in combination with xylanase are identified for broiler chickens.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: Successful gene editing technology is crucial in molecular biology and related fields. An essential part of an efficient knock-in system is increasing homologous recombination (HR) efficiency in the double-strand break (DSB) repair pathways. Interestingly, HR is closely related to the DNA mismatch repair (MMR) pathway, whereby MMR-related gene Msh2 recognizes a mismatch of nucleotides in recombinant intermediates or gene conversion formed during HR. This study aimed to investigate how the knockdown of Msh2 affects HR-mediated knock-in efficiency at the mouse β-casein locus. Therefore, we investigated the effect of inhibiting Msh2 expression on the expression of the HR-related gene Rad51 and the key enzyme DNA ligase IV involved in non-homologous end joining (NHEJ).
Methods: The knock-in vector targeting the mouse β-casein gene locus, programmed guide RNA, and Msh2 siRNA expression vector were co-transfected in HC11 cells, or only the Msh2 siRNA expression vector was transfected. Knock-in efficiency was confirmed by polymerase chain reaction (PCR). The mRNA and protein expression of Msh2, HR-related gene Rad51, and NHEJ-related gene DNA ligase IV were evaluated by quantitative reverse transcription PCR (RT-qPCR) and Western blot analysis.
Results: The knock-in vector efficiency at the mouse β-casein gene locus significantly decreased upon Msh2 knockdown in HC11 mouse mammary epithelial cells (HC11 cell). Additionally, the knockdown of the DNA MMR-related gene Msh2 protein significantly downregulated the nuclear protein expression of the HR-related Rad51 and NHEJ-related DNA ligase IV genes.
Conclusion: The decreased Msh2 protein expression in the nucleus downregulated the Rad51 and ligase IV protein expressions. Consequently, reduced Rad51 expression results in decreased knock-in efficiency.
目的:成功的基因编辑技术对分子生物学及相关领域至关重要。高效基因敲入系统的一个重要组成部分是提高双链断裂(DSB)修复途径中的同源重组(HR)效率。有趣的是,HR 与 DNA 错配修复(MMR)途径密切相关,MMR 相关基因 Msh2 可识别 HR 过程中形成的重组中间体或基因转换中的核苷酸错配。本研究旨在探讨敲除Msh2如何影响小鼠β-酪蛋白基因座上HR介导的基因敲入效率。因此,我们研究了抑制Msh2表达对HR相关基因Rad51和参与非同源末端连接(NHEJ)的关键酶DNA连接酶IV表达的影响:方法:将靶向小鼠β-酪蛋白基因位点的基因敲入载体、程序引导RNA和Msh2 siRNA表达载体共转染HC11细胞,或仅转染Msh2 siRNA表达载体。通过聚合酶链反应(PCR)确认了基因敲入的效率。通过反转录定量 PCR(RT-qPCR)和 Western 印迹分析评估了 Msh2、HR 相关基因 Rad51 和 NHEJ 相关基因 DNA 连接酶 IV 的 mRNA 和蛋白表达:结果:在HC11小鼠乳腺上皮细胞(HC11细胞)中敲除Msh2后,小鼠β-酪蛋白基因位点的基因敲入载体效率明显降低。此外,DNA MMR相关基因Msh2蛋白敲除后,与HR相关的Rad51和与NHEJ相关的DNA连接酶IV基因的核蛋白表达也明显下调:结论:Msh2蛋白在细胞核中的表达减少会下调Rad51和连接酶IV蛋白的表达。结论:Msh2 蛋白在细胞核中的表达量减少会下调 Rad51 和连接酶 IV 蛋白的表达,因此 Rad51 表达量减少会导致基因敲入效率降低。
{"title":"The decrease in Rad51 and DNA ligase IV nuclear protein expression in Msh2 knockdown HC11 cells induced the low CRISPR/Cas9-mediated knock-in efficiency at the β-casein gene locus.","authors":"Ga-Yeon Kim, Man-Jong Kang","doi":"10.5713/ab.24.0206","DOIUrl":"https://doi.org/10.5713/ab.24.0206","url":null,"abstract":"<p><strong>Objective: </strong>Successful gene editing technology is crucial in molecular biology and related fields. An essential part of an efficient knock-in system is increasing homologous recombination (HR) efficiency in the double-strand break (DSB) repair pathways. Interestingly, HR is closely related to the DNA mismatch repair (MMR) pathway, whereby MMR-related gene Msh2 recognizes a mismatch of nucleotides in recombinant intermediates or gene conversion formed during HR. This study aimed to investigate how the knockdown of Msh2 affects HR-mediated knock-in efficiency at the mouse β-casein locus. Therefore, we investigated the effect of inhibiting Msh2 expression on the expression of the HR-related gene Rad51 and the key enzyme DNA ligase IV involved in non-homologous end joining (NHEJ).</p><p><strong>Methods: </strong>The knock-in vector targeting the mouse β-casein gene locus, programmed guide RNA, and Msh2 siRNA expression vector were co-transfected in HC11 cells, or only the Msh2 siRNA expression vector was transfected. Knock-in efficiency was confirmed by polymerase chain reaction (PCR). The mRNA and protein expression of Msh2, HR-related gene Rad51, and NHEJ-related gene DNA ligase IV were evaluated by quantitative reverse transcription PCR (RT-qPCR) and Western blot analysis.</p><p><strong>Results: </strong>The knock-in vector efficiency at the mouse β-casein gene locus significantly decreased upon Msh2 knockdown in HC11 mouse mammary epithelial cells (HC11 cell). Additionally, the knockdown of the DNA MMR-related gene Msh2 protein significantly downregulated the nuclear protein expression of the HR-related Rad51 and NHEJ-related DNA ligase IV genes.</p><p><strong>Conclusion: </strong>The decreased Msh2 protein expression in the nucleus downregulated the Rad51 and ligase IV protein expressions. Consequently, reduced Rad51 expression results in decreased knock-in efficiency.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: The aim of this study was to determine the effect of rumen-protected rubber seed oil supplementation on feed digestibility, milk yield, and milk composition in tropical dairy cows.
Methods: Twelve crossbred Holstien-Friesian dairy cows (75% Holstein-Friesian, 25% Thai native breed) with a mean body weight (BW) of 460 ± 30 kg and 20 ± 5 days in milk were randomly assigned to 1 of 3 treatments according to a completely randomized design. The treatments were as follows: a basal diet without rumen-protected fat (RPF) (control) or supplementation of rumen-protected palm oil (RPPO) at 300 g/h/d and rumen-protected rubber seed oil (RPRSO) at 300 g/h/d. Each cow was fed a total mixed ration ad libitum.
Results: The nutrient intake was similar among treatments (p>0.05). Adding RPF did not affect nutrient digestibility, while organic matter digestibility increased in dairy cows receiving RPRSO (p<0.01). Blood urea nitrogen, total protein, or glucose did not alter among treatments (p>0.05), while triglycerides and cholesterol were increased when cows were fed RPPO (p<0.01). Adding RPF increases milk yield in cows (p<0.01). The supplementation of RPRSO increased milk fat (p=0.04). Milk fat yield was higher in RPPO and highest in RPRSO (p<0.01). The addition of RPF increased the oleic acid (OA, C18:1 cis-9) in milk (p=0.01). In addition, cows fed RPRSO increased linoleic acid (LA; C18:26 cis-9,12 + trans-9,12) and -linolenic acid (ALA; C18-33 cis-9,12,15) in milk (p<0.01). The addition of RPF increased milk unsaturated fatty acids (UFA) and monounsaturated fatty acids (MUFA) (P≤0.04). The PUFA in milk increased with RPRSO supplementation (p<0.01).
Conclusion: Supplementation of RPRSO during early lactation can increase feed digestibility and the concentration of milk fat with PUFA (LA and ALA) in tropical dairy cows.
{"title":"Effects of supplementing rumen-protected rubber seed oil to dairy cattle on feed digestibility and milk production.","authors":"Pongsatorn Gunun, Norakamol Laorodphan, Warachit Phayom, Walailuck Kaewwongsa, Chatchai Kaewpila, Waroon Khota, Nirawan Gunun","doi":"10.5713/ab.24.0287","DOIUrl":"https://doi.org/10.5713/ab.24.0287","url":null,"abstract":"<p><strong>Objective: </strong>The aim of this study was to determine the effect of rumen-protected rubber seed oil supplementation on feed digestibility, milk yield, and milk composition in tropical dairy cows.</p><p><strong>Methods: </strong>Twelve crossbred Holstien-Friesian dairy cows (75% Holstein-Friesian, 25% Thai native breed) with a mean body weight (BW) of 460 ± 30 kg and 20 ± 5 days in milk were randomly assigned to 1 of 3 treatments according to a completely randomized design. The treatments were as follows: a basal diet without rumen-protected fat (RPF) (control) or supplementation of rumen-protected palm oil (RPPO) at 300 g/h/d and rumen-protected rubber seed oil (RPRSO) at 300 g/h/d. Each cow was fed a total mixed ration ad libitum.</p><p><strong>Results: </strong>The nutrient intake was similar among treatments (p>0.05). Adding RPF did not affect nutrient digestibility, while organic matter digestibility increased in dairy cows receiving RPRSO (p<0.01). Blood urea nitrogen, total protein, or glucose did not alter among treatments (p>0.05), while triglycerides and cholesterol were increased when cows were fed RPPO (p<0.01). Adding RPF increases milk yield in cows (p<0.01). The supplementation of RPRSO increased milk fat (p=0.04). Milk fat yield was higher in RPPO and highest in RPRSO (p<0.01). The addition of RPF increased the oleic acid (OA, C18:1 cis-9) in milk (p=0.01). In addition, cows fed RPRSO increased linoleic acid (LA; C18:26 cis-9,12 + trans-9,12) and -linolenic acid (ALA; C18-33 cis-9,12,15) in milk (p<0.01). The addition of RPF increased milk unsaturated fatty acids (UFA) and monounsaturated fatty acids (MUFA) (P≤0.04). The PUFA in milk increased with RPRSO supplementation (p<0.01).</p><p><strong>Conclusion: </strong>Supplementation of RPRSO during early lactation can increase feed digestibility and the concentration of milk fat with PUFA (LA and ALA) in tropical dairy cows.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: Our study aimed to investigate the gender and age-related variations in rumen fermentation, serum metabolites, and microbiota in Qinchuan cattle.
Methods: A total of 38 Qinchuan beef cattle were selected and maintained on a uniform diet for three months. Rumen fluid and blood samples were collected to determine rumen fermentation, serum metabolites, and microbial 16S rRNA sequencing.
Results: The results revealed that the concentration of rumen butyrate in female Qinchuan cattle was significantly higher than in males (P<0.05). Isobutyrate, butyrate, and isovalerate exhibited significant age-related differences. Females exhibited lower serum GLU and higher TG, NEFA levels compared to males (P<0.05). Serum ALB and UREA levels increased with age (P<0.05). Furthermore, the alpha diversity of rumen bacteria improved with age (P<0.05), with no gender differences observed. Males had higher relative abundances of Bacteroidota, Verrucomicrobiota, and Cyanobacteria, while females had higher Firmicutes and Desulfobacterota (P<0.05). The cellulose-degrading genus Ruminococcus and propionate-producing genus Succiniclasticum were more abundant in females, whereas the anti-inflammatory genus Lachnospiraceae_NK4A136_group and the hemicellulose-degrading genus Prevotella were more abundant in males (P<0.05). Age-related differences in bacteria were found in Pseudobutyrivibrio and several members of the Lachnospiraceae. Functional prediction indicated that "Amino acid metabolism" and "Lipid metabolism" were mainly enriched in females, whereas "Carbohydrate metabolism" and "Glycan biosynthesis and metabolism" were enriched in males (P<0.05). RDA analysis highlighted butyrate as a key factor influencing the rumen bacterial community. NK4A214_group and Ruminococcus were positively correlated with butyrate, while Prevotella and Pseudobutyrivibrio were negatively correlated with butyrate (P<0.05).
Conclusion: We observed a significant improvement in the diversity and stability of rumen microbiota as age increased. Ruminococcus, NK4A214_group, and Prevotella were likely contributors to variations in energy utilization and fat deposition between male and female Qinchuan cattle.
{"title":"Gender and age-related variations in rumen fermentation and microbiota of Qinchuan cattle.","authors":"Yueting Pan, Huaxuan Li, Juze Wang, Xiaolei Sun, Entang Liang, Juntao Guo, Jianfang Wang, Ke Zhang, Bingzhi Li, Mengqi Zan, Wucai Yang, Linsen Zan","doi":"10.5713/ab.24.0328","DOIUrl":"https://doi.org/10.5713/ab.24.0328","url":null,"abstract":"<p><strong>Objective: </strong>Our study aimed to investigate the gender and age-related variations in rumen fermentation, serum metabolites, and microbiota in Qinchuan cattle.</p><p><strong>Methods: </strong>A total of 38 Qinchuan beef cattle were selected and maintained on a uniform diet for three months. Rumen fluid and blood samples were collected to determine rumen fermentation, serum metabolites, and microbial 16S rRNA sequencing.</p><p><strong>Results: </strong>The results revealed that the concentration of rumen butyrate in female Qinchuan cattle was significantly higher than in males (P<0.05). Isobutyrate, butyrate, and isovalerate exhibited significant age-related differences. Females exhibited lower serum GLU and higher TG, NEFA levels compared to males (P<0.05). Serum ALB and UREA levels increased with age (P<0.05). Furthermore, the alpha diversity of rumen bacteria improved with age (P<0.05), with no gender differences observed. Males had higher relative abundances of Bacteroidota, Verrucomicrobiota, and Cyanobacteria, while females had higher Firmicutes and Desulfobacterota (P<0.05). The cellulose-degrading genus Ruminococcus and propionate-producing genus Succiniclasticum were more abundant in females, whereas the anti-inflammatory genus Lachnospiraceae_NK4A136_group and the hemicellulose-degrading genus Prevotella were more abundant in males (P<0.05). Age-related differences in bacteria were found in Pseudobutyrivibrio and several members of the Lachnospiraceae. Functional prediction indicated that \"Amino acid metabolism\" and \"Lipid metabolism\" were mainly enriched in females, whereas \"Carbohydrate metabolism\" and \"Glycan biosynthesis and metabolism\" were enriched in males (P<0.05). RDA analysis highlighted butyrate as a key factor influencing the rumen bacterial community. NK4A214_group and Ruminococcus were positively correlated with butyrate, while Prevotella and Pseudobutyrivibrio were negatively correlated with butyrate (P<0.05).</p><p><strong>Conclusion: </strong>We observed a significant improvement in the diversity and stability of rumen microbiota as age increased. Ruminococcus, NK4A214_group, and Prevotella were likely contributors to variations in energy utilization and fat deposition between male and female Qinchuan cattle.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective: This study aimed to investigate the effects of rations incorporating rumen degradable protein (RDP), non-fiber carbohydrate (NFC), and sulfur on nutrient utilization, milk production, milk quality, and the economic aspects of dairy goats.
Methods: In the first study, five treatments were tested in a block-randomized design to examine in vitro fermentability and digestibility. Treatments included P0 (control diet), P1 (P0 + 7.5% cassava-NFC), P2 (P0 + 7.5% cassava-NFC and 5% soybean), P3 (P0 + 7.5% cassava-NFC and 5% autoclaved soybean), and P4 (P0 + 7.5% cassava-NFC, 5% autoclaved soybean, and 0.1% sulfur). In the second study, sixteen lactating Saanen-Ettawa crossbreed dairy goats (initial milk production = 0.97 ± 0.25 L/head/day, 30 DIM; body weight = 44.44 ± 7.20 kg) were assigned into four groups and fed treatment diets: R0 (basal diet), R1 (R0 + 12% autoclaved soybean), R2 (R0 + 12% autoclaved soybean and 9% cassava-NFC), and R3 (R0 + 12% autoclaved soybean, 9% cassava-NFC, and 0.11% sulfur). The diets were offered for 7 weeks with a two-week adaptation period. Parameters observed include milk production and quality, milk fatty acids, blood hematology and metabolites, and economic aspects. The study used a block randomized design with initial weight as a block.
Results: The treatment diets in the first study had no effect on in vitro fermentability and digestibility. Treatments R2 and R3 resulted in higher milk production than R0 and R1. Milk quality remained consistent across treatments, while solid non-fat, lactose, and protein was higher in R2 and R3. Blood hematology was unaffected by the treatments. Nutrient efficiency and income over feed cost were enhanced by R2 and R3 treatments.
Conclusion: Protected RDP using autoclaved soybean and cassava-NFC maintained in vitro digestibility, even though it did not improve in vitro fermentability. Precision dairy ration based on RDP, NFC, and sulfur positively impacts milk production, nutrient efficiency, and animal health in dairy goats.
{"title":"Optimizing tropical dairy goat diets: balancing rumen degradable protein, non-fiber carbohydrates, and sulfur requirements.","authors":"Idat Galih Permana, Annisa Rosmalia, Febby Yustika Anggarini, Despal Despal, Toto Toharmat, Dwierra Evvyernie","doi":"10.5713/ab.24.0155","DOIUrl":"https://doi.org/10.5713/ab.24.0155","url":null,"abstract":"<p><strong>Objective: </strong>This study aimed to investigate the effects of rations incorporating rumen degradable protein (RDP), non-fiber carbohydrate (NFC), and sulfur on nutrient utilization, milk production, milk quality, and the economic aspects of dairy goats.</p><p><strong>Methods: </strong>In the first study, five treatments were tested in a block-randomized design to examine in vitro fermentability and digestibility. Treatments included P0 (control diet), P1 (P0 + 7.5% cassava-NFC), P2 (P0 + 7.5% cassava-NFC and 5% soybean), P3 (P0 + 7.5% cassava-NFC and 5% autoclaved soybean), and P4 (P0 + 7.5% cassava-NFC, 5% autoclaved soybean, and 0.1% sulfur). In the second study, sixteen lactating Saanen-Ettawa crossbreed dairy goats (initial milk production = 0.97 ± 0.25 L/head/day, 30 DIM; body weight = 44.44 ± 7.20 kg) were assigned into four groups and fed treatment diets: R0 (basal diet), R1 (R0 + 12% autoclaved soybean), R2 (R0 + 12% autoclaved soybean and 9% cassava-NFC), and R3 (R0 + 12% autoclaved soybean, 9% cassava-NFC, and 0.11% sulfur). The diets were offered for 7 weeks with a two-week adaptation period. Parameters observed include milk production and quality, milk fatty acids, blood hematology and metabolites, and economic aspects. The study used a block randomized design with initial weight as a block.</p><p><strong>Results: </strong>The treatment diets in the first study had no effect on in vitro fermentability and digestibility. Treatments R2 and R3 resulted in higher milk production than R0 and R1. Milk quality remained consistent across treatments, while solid non-fat, lactose, and protein was higher in R2 and R3. Blood hematology was unaffected by the treatments. Nutrient efficiency and income over feed cost were enhanced by R2 and R3 treatments.</p><p><strong>Conclusion: </strong>Protected RDP using autoclaved soybean and cassava-NFC maintained in vitro digestibility, even though it did not improve in vitro fermentability. Precision dairy ration based on RDP, NFC, and sulfur positively impacts milk production, nutrient efficiency, and animal health in dairy goats.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Danai Jattawa, Thanathip Suwanasopee, Mauricio A Elzo, Skorn Koonawootrittriron
Objective: This study assessed the impact of incorporating imputed SNP information from non-genotyped animals on genomic-polygenic evaluations in a Thai multibreed dairy population under various levels of imputation accuracy.
Methods: Data encompassed pedigree and phenotypic records for 305-day milk yield (MY), 305-day fat (Fat), and age at first calving (AFC) from 12,859 first-lactation cows, and genotypic records of various densities from 4,364 animals. A set of 64 animals genotyped with GeneSeek Genomic Profiler 80K and with four or more genotyped progenies was defined as target animals to simulate imputation scenarios for non-genotyped individuals. Actual and imputed genotypes were utilized to construct three SNP sets. All SNP Sets contained actual and imputed SNP markers from genotyped animals. SNP Set 1 contained no SNPs from target animals, whereas SNP Set 2 incorporated imputed SNPs from target animals, and SNP Set 3 added actual SNPs from target animals. Genomic-polygenic evaluations were conducted using a 3-trait single-step model that included contemporary group, calving age, and heterozygosity as fixed effects and animal additive genetic and residual as random effects.
Results: The imputation accuracy was similar across non-genotyped animals irrespective of the number of genotyped progenies (average: 40.55%; range: 34.68% to 53.82%). Estimates of additive genetic and environmental variances and covariances for MY and AFC varied across SNP sets. SNP Sets 1 and 2 had slightly higher additive genetic and lower environmental variances and covariances than SNP Set 3. Heritabilities and additive genetic, environmental, and phenotypic correlations between MY, Fat, and AFC were similar across all SNP Sets. Spearman rank correlations between genomic-polygenic EBVs from SNP Sets 2 and 3 were high for all traits (0.9990±0.0003).
Conclusion: Utilization of phenotypic and pedigree data from imputed non-genotyped animals enhanced the efficiency and cost-effectiveness of the genetic improvement program in the Thai multibreed dairy cattle population.
目的本研究评估了在泰国多品种奶牛群体中,在不同的归因准确性水平下,纳入非基因分型动物的归因 SNP 信息对基因组-多基因评估的影响:数据包括12859头初产奶牛的305天产奶量(MY)、305天脂肪(Fat)和初产年龄(AFC)的血统和表型记录,以及4364头动物的不同密度的基因型记录。使用 GeneSeek Genomic Profiler 80K 进行基因分型并有四个或更多基因分型后代的一组 64 头动物被定义为目标动物,以模拟非基因分型个体的估算情况。实际基因型和估算基因型被用来构建三个 SNP 集。所有 SNP 组都包含来自基因分型动物的实际和估算 SNP 标记。SNP 集 1 不包含来自目标动物的 SNP,SNP 集 2 包含来自目标动物的推算 SNP,SNP 集 3 添加了来自目标动物的实际 SNP。基因组-多基因评估采用 3 性状单步模型进行,该模型将当代组、产犊年龄和杂合度作为固定效应,将动物附加基因和残差作为随机效应:无论基因分型后代的数量如何,非基因分型动物的估算准确率相似(平均:40.55%;范围:34.68% 至 53.82%)。不同 SNP 组对 MY 和 AFC 的加性遗传变异、环境变异和协方差的估计值各不相同。与 SNP 组 3 相比,SNP 组 1 和 2 的加性遗传变异和协方差略高,环境变异和协方差略低。在所有 SNP 组中,MY、脂肪和 AFC 之间的遗传力和加性遗传、环境和表型相关性相似。对于所有性状,SNP 集 2 和 3 的基因组-多基因 EBV 之间的 Spearman 等级相关性都很高(0.9990±0.0003):利用来自非基因分型动物的表型和血统数据,提高了泰国多品种奶牛群体遗传改良计划的效率和成本效益。
{"title":"Inclusion of imputed genotypes from non-genotyped dairy cattle in a Thai multibreed genomic-polygenic evaluation.","authors":"Danai Jattawa, Thanathip Suwanasopee, Mauricio A Elzo, Skorn Koonawootrittriron","doi":"10.5713/ab.24.0317","DOIUrl":"https://doi.org/10.5713/ab.24.0317","url":null,"abstract":"<p><strong>Objective: </strong>This study assessed the impact of incorporating imputed SNP information from non-genotyped animals on genomic-polygenic evaluations in a Thai multibreed dairy population under various levels of imputation accuracy.</p><p><strong>Methods: </strong>Data encompassed pedigree and phenotypic records for 305-day milk yield (MY), 305-day fat (Fat), and age at first calving (AFC) from 12,859 first-lactation cows, and genotypic records of various densities from 4,364 animals. A set of 64 animals genotyped with GeneSeek Genomic Profiler 80K and with four or more genotyped progenies was defined as target animals to simulate imputation scenarios for non-genotyped individuals. Actual and imputed genotypes were utilized to construct three SNP sets. All SNP Sets contained actual and imputed SNP markers from genotyped animals. SNP Set 1 contained no SNPs from target animals, whereas SNP Set 2 incorporated imputed SNPs from target animals, and SNP Set 3 added actual SNPs from target animals. Genomic-polygenic evaluations were conducted using a 3-trait single-step model that included contemporary group, calving age, and heterozygosity as fixed effects and animal additive genetic and residual as random effects.</p><p><strong>Results: </strong>The imputation accuracy was similar across non-genotyped animals irrespective of the number of genotyped progenies (average: 40.55%; range: 34.68% to 53.82%). Estimates of additive genetic and environmental variances and covariances for MY and AFC varied across SNP sets. SNP Sets 1 and 2 had slightly higher additive genetic and lower environmental variances and covariances than SNP Set 3. Heritabilities and additive genetic, environmental, and phenotypic correlations between MY, Fat, and AFC were similar across all SNP Sets. Spearman rank correlations between genomic-polygenic EBVs from SNP Sets 2 and 3 were high for all traits (0.9990±0.0003).</p><p><strong>Conclusion: </strong>Utilization of phenotypic and pedigree data from imputed non-genotyped animals enhanced the efficiency and cost-effectiveness of the genetic improvement program in the Thai multibreed dairy cattle population.</p>","PeriodicalId":7825,"journal":{"name":"Animal Bioscience","volume":" ","pages":""},"PeriodicalIF":2.4,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556999","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}