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Bacterial and fungal diversity in the gut of polystyrene-fed Alphitobius diaperinus (Insecta: Coleoptera) 以聚苯乙烯为食的双翅蚁肠道细菌和真菌多样性(昆虫亚目:鞘翅目)
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-09-01 DOI: 10.1016/j.angen.2020.200109
Claudio Cucini , Chiara Leo , Matteo Vitale , Francesco Frati , Antonio Carapelli , Francesco Nardi

The use of plastics burgeoned in the last decades to become an essential component of our society. An environment friendly method to dispose of plastic waste is not available yet, to the outcome that these accumulate in landfills or are scattered as microplastics. New researches reported that some coleopteran species are able to destroy plastics thanks to their chewing mouthparts and the metabolic activity of their gut microbiota. This study shows that the lesser mealworm Alphitobius diaperinus is capable of feeding on, and apparently degrading, polystyrene. The gut microbiota of polystyrene-fed larvae was characterized using an NGS metagenomic approach, targeting both bacteria and fungi. Several microbe taxa emerged as differentially abundant between treatment and control groups (Cronobacter, Kocuria and Pseudomonas as bacteria, Aspergillus, Hyphodermella, Trichoderma as fungi). Some of them have been found in association with plastic compounds and/or have been proposed to be capable of plastic degradation. This research supports the notion that, although synthetic molecules, unlike most natural compounds, do not generally enter the natural food chain to be degraded by the environmental microbiota, some microbial communities may be able to decompose plastics. We speculate that, once identified, such communities may open to the possibility of devising bioreactors for plastic degradation.

在过去的几十年里,塑料的使用迅速增长,成为我们社会的一个重要组成部分。目前还没有一种环保的方法来处理塑料废物,结果是这些塑料废物堆积在垃圾填埋场或以微塑料的形式分散。新的研究报告称,一些鞘翅目动物能够破坏塑料,这要归功于它们的咀嚼口器和肠道微生物群的代谢活动。这项研究表明,小粉虫(Alphitobius diaperinus)能够以聚苯乙烯为食,并明显地降解聚苯乙烯。采用以细菌和真菌为目标的NGS宏基因组方法对聚苯乙烯喂养的幼虫的肠道微生物群进行了表征。一些微生物类群在处理组和对照组之间出现了差异丰富(细菌为克罗诺杆菌、Kocuria和假单胞菌,真菌为曲霉、黑霉、木霉)。其中一些已被发现与塑料化合物有关和/或已被提出能够降解塑料。这项研究支持这样一种观点,即尽管合成分子与大多数天然化合物不同,通常不会进入天然食物链被环境微生物群降解,但一些微生物群落可能能够分解塑料。我们推测,一旦确定,这些群落可能会为设计塑料降解生物反应器提供可能性。
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引用次数: 10
Comparative genomics of the sheep Tas2r repertoire to cattle, goat, human, dog, and mice 绵羊Tas2r基因库与牛、山羊、人类、狗和小鼠的比较基因组学研究
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-09-01 DOI: 10.1016/j.angen.2020.200107
Dillan Henslee , Brenda Murdoch , Joel Yelich , J. Bret Taylor , Melinda Ellison

Type two taste receptors (Tas2r) are the only taste receptors that distinguish bitter-tasting compounds. Human Tas2r genes have been extensively studied and have been associated with dietary preferences, health, substance dependence, and other diseases. Sheep are an important livestock species known for grazing vast rangelands with variable ecology and plant communities. However, the limited work related to Tas2r gene repertoires in the reference genomes of grazing animals creates a challenge for understanding how these genes influence diet selection preferences. Tas2r genes typically cluster on two regions of the genome. In the second cluster of the sheep (OAR_rambouillet_1.0), goat (ARS1), and cattle (ARS-UCD1.2) reference genomes, there are six, nine, and two Tas2r genes that were not annotated, respectively. Comparative genomic strategies were used to cross-reference sheep Tas2r genes in cattle, goat, human, dog, and mice for the proposed annotations. A nucleotide similarity comparison of the whole Tas2r repertoires for the three grazing species suggested that goat and cattle are similar to sheep (≥ 95.5% and ≥ 91.9% similarity, respectively). Several Tas2r genes found in sheep, cattle, and goat are likely not found in human, dog, or mice and may be reserved to ruminants or animals of similar feeding ecology. Using a comparative genomics approach, this paper proposes annotations for sheep, cattle, and goat Tas2r genes. Further research is needed to better understand how Tas2r genes may influence diet selection in grazing ruminant species, which could provide more insight into management of western rangelands through grazing strategies.

二型味觉感受器(Tas2r)是唯一能区分苦味化合物的味觉感受器。人类Tas2r基因已被广泛研究,并与饮食偏好、健康、物质依赖和其他疾病有关。羊是一种重要的牲畜,以放牧广阔的牧场和多变的生态和植物群落而闻名。然而,与放牧动物参考基因组中Tas2r基因库相关的有限工作为理解这些基因如何影响饮食选择偏好带来了挑战。Tas2r基因通常聚集在基因组的两个区域。在绵羊(OAR_rambouillet_1.0)、山羊(ARS1)和牛(ARS-UCD1.2)参考基因组的第二簇中,分别有6个、9个和2个Tas2r基因未被注释。我们使用比较基因组策略对牛、山羊、人类、狗和小鼠的绵羊Tas2r基因进行交叉比对,以获得所提出的注释。三种放牧物种的Tas2r全谱核苷酸相似性比较表明,山羊和牛与绵羊相似(相似性分别为≥95.5%和≥91.9%)。在绵羊、牛和山羊中发现的一些Tas2r基因可能在人类、狗或老鼠中没有发现,可能只存在于反刍动物或具有类似喂养生态的动物中。利用比较基因组学方法,本文提出了绵羊、牛和山羊Tas2r基因的注释。进一步研究Tas2r基因如何影响放牧反刍动物的饮食选择,可以为通过放牧策略管理西部牧场提供更多的见解。
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引用次数: 1
Early post mortem expression of apoptosis genes in longissimus dorsi muscle of Braford steers differing in managing fed system 不同饲养方式的牛背最长肌死后早期凋亡基因的表达
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-06-01 DOI: 10.1016/j.angen.2020.200101
M.S. Coria , M.S. Castaño Ledesma , G.A. Palma

The objective of this study was to evaluate the expression of casp9, Bax, Bcl2 Hsp70 and Hsp27 genes in Braford steers differing in finishing strategies. Thirty Braford steers grazing on summer pasture were used for the study. For 120 days fifteen animals were supplemented with corn silage at 1% of body weight per head per day whereas the remaining 15 steers only received pasture. Supplemented steers showed higher WBSF (p = .03) than Control group. Gene expression was measured using real-time polymerase chain reaction. Expression of the casp9, Bax, Bcl2 genes did not differ between groups. Expression of Hsp70 and Hsp27 genes was up-regulated in Suppl group (p < .05). These results suggest a gene by diet interaction in Hsp70 and Hsp27 chaperones and these interaction impact in Warner Bratzler Shear Force in Braford longissimus dorsi muscle.

本研究的目的是评估casp9、Bax、Bcl2、Hsp70和Hsp27基因在不同育肥策略的Braford阉牛中的表达。研究对象为30头在夏季牧场放牧的布拉福德阉牛。在120天的试验中,15头牛每天以每头体重的1%添加玉米青贮饲料,其余15头牛只饲喂牧草。与对照组相比,饲粮添加后的肉牛WBSF显著增加(p = .03)。采用实时聚合酶链反应测定基因表达。casp9、Bax、Bcl2基因的表达在各组间无显著差异。补品组Hsp70和Hsp27基因表达上调(p <. 05)。这些结果表明,Hsp70和Hsp27伴侣基因通过饮食相互作用影响了Braford背最长肌的Warner Bratzler剪切力。
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引用次数: 0
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Animal Gene
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