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Proportion and antibiogram of methicillin-resistant Staphylococcus aureus (MRSA) in Africa: a systematic review and meta-analysis. 非洲耐甲氧西林金黄色葡萄球菌(MRSA)的比例和抗生素谱:系统回顾和荟萃分析。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-21 DOI: 10.1186/s13756-025-01687-3
Ahmed Azzam, Heba Khaled, Ahmed Salem, Muhamad Sayed, Abdelmarouf Mohieldein, Mohamed S Elsayed, Enas Mohamed Lotfy, Hend H A M Abdullah, Fatma E Hassan, Hassan Marei, Nouran Hassan, Elham Abdulnaby, Gellan Alaa Mohamed Kamel, Ismael Osman, Mohamed Ahmed Reda, Dina Ismail, Mahmoud Nazih, Haitham Salem, Amar Basil, Dina Rady

Background: Methicillin-resistant Staphylococcus aureus (MRSA) is a major public health concern, particularly in resource-limited settings such as Africa. This meta-analysis aimed to determine the proportion of MRSA among S. aureus isolates from patients with confirmed infections and to assess associated antibiotic resistance profiles across the continent.

Methods: A comprehensive literature search was conducted in African Journals Online, African Index Medicus, PubMed, Scopus, Google Scholar, and Web of Science for studies published between January 1, 2013, and June 5, 2024. Primary studies were included if they reported MRSA proportion or resistance profiles in Africa, employed reliable detection techniques, and analyzed clinical specimens from infected patients. Statistical analyses were performed using the meta package in R software, applying a random-effects model. A p-value of < 0.05 was considered statistically significant.

Results: This meta-analysis included 191 studies, encompassing 40,979 S. aureus isolates. Nigeria contributed the highest number of studies (n = 29), followed by Egypt (n = 26). The vast majority of studies (n = 186) were based on hospital settings. The pooled proportion of MRSA in Africa was 42.2% (95% CI 38.7-45.6). By detection method, proportion was 41.4% for mecA, 42.8% for the cefoxitin disc method, and 39.1% for the oxacillin disc method, with no significant differences observed (p = 0.8). Regionally, Northern Africa had a significantly higher proportion of 56.2% (95% CI 49.3-62.9) compared with 36.7% (95% CI 33.2-40.4) in Sub-Saharan Africa (p < 0.001). At the country level, Eritrea reported the highest proportion (71.8%), followed by Egypt (61.8%), while the lowest rates were observed in Malawi (7.0%) and Gabon (8.2%). Regarding MRSA resistance profiles, linezolid (3.4%) and vancomycin (4.7%) showed the lowest resistance rates, whereas higher rates were noted for fusidic acid (11.6%), rifampin (28.4%), clindamycin (40.4%), trimethoprim-sulfamethoxazole (54.5%), and tetracycline (60.2%). Limited data were available for telavancin, dalbavancin, oritavancin, tedizolid, ceftaroline, mupirocin, and daptomycin.

Conclusion: The proportion of MRSA in Africa remains high at 42.2%, with marked regional disparities. Although resistance rates for linezolid and vancomycin are relatively low, they surpass global averages, raising concerns about emerging resistance. Alarmingly high resistance rates to several other antibiotics further underscore the urgent need for targeted interventions and continuous surveillance.

背景:耐甲氧西林金黄色葡萄球菌(MRSA)是一个主要的公共卫生问题,特别是在非洲等资源有限的环境中。本荟萃分析旨在确定从确诊感染患者中分离出的金黄色葡萄球菌中MRSA的比例,并评估整个非洲大陆相关的抗生素耐药性概况。方法:在2013年1月1日至2024年6月5日期间发表的研究中,对非洲期刊在线、非洲索引Medicus、PubMed、Scopus、谷歌Scholar和Web of Science进行全面的文献检索。如果报告了非洲的MRSA比例或耐药谱,采用可靠的检测技术,并分析了感染患者的临床标本,则纳入初级研究。采用随机效应模型,采用R软件中的meta包进行统计分析。结果的p值:该荟萃分析包括191项研究,包括40,979株金黄色葡萄球菌。尼日利亚的研究数量最多(n = 29),其次是埃及(n = 26)。绝大多数研究(n = 186)基于医院环境。MRSA在非洲的总比例为42.2% (95% CI 38.7-45.6)。通过检测方法,mecA的检出率为41.4%,头孢西丁圆盘法的检出率为42.8%,奥西林圆盘法的检出率为39.1%,差异无统计学意义(p = 0.8)。从地区来看,北非的比例为56.2% (95% CI 49.3-62.9),而撒哈拉以南非洲的比例为36.7% (95% CI 33.2-40.4)。(p结论:MRSA在非洲的比例仍然很高,为42.2%,地区差异明显。虽然利奈唑胺和万古霉素的耐药率相对较低,但它们超过了全球平均水平,这引起了人们对新出现的耐药性的担忧。对其他几种抗生素的耐药率高得惊人,进一步强调迫切需要采取有针对性的干预措施和持续监测。
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引用次数: 0
Preventing bloodstream infections through effective surveillance, AUDIT and FEEDBACK: evaluation of a 20-year hospital program using a TYPE I hybrid design. 通过有效的监测、审计和反馈预防血流感染:对使用I型混合设计的20年医院项目的评估。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-17 DOI: 10.1186/s13756-025-01696-2
Gregory Merlo, Belinda Henderson, Louise Marquart-Wilson, Elizabeth Underwood, Matthew McDonnell, Naomi Runnegar, Margaret Lindsay, Fiona Caristo, Paola Vasquez Vasquez, Geoffrey Playford, Lisa Hall

Introduction: Bloodstream infections (BSIs) are a leading cause of healthcare-associated morbidity and mortality, with a significant portion being preventable. Despite this, BSIs remain common, particularly in Australian hospitals. Princess Alexandra Hospital (PAH) in Queensland has implemented a surveillance program that focuses on the preventability of BSIs, with continuous loop, real-time audit-feedback to teach clinicians about preventable factors and possible actions. This study evaluated the program's implementation and impact on reducing infections.

Methods: A Type I hybrid implementation-effectiveness design was used, combining interrupted time series analysis of BSI data from 2002 to 2023 and focus group discussions with the Infection Management Service team members and ward-based clinicians. Interrupted time series analysis was used to assess the impact of the Staphylococcus aureus bacteraemia (SAB) prevention initiative introduced in November 2011. Statistical analysis employed segmented regression using negative binomial regression with robust standard errors. Focus group data were analysed via the Consolidated Framework for Implementation Research (CFIR).

Results: The intervention resulted in an immediate, but non-significant, reduction in SAB monthly rates (incidence rate ratio, IRR = 0.839, 95% CI: 0.653-1.078), and a declining trend in monthly rates was also noted postintervention (IRR = 0.998, 95% CI: 0.996-1.000). Focus group feedback identified enablers, including effective collaboration and challenges such as needing to address inconsistent documentation and differing perceptions of the program's intent.

Discussion: The program's focus on preventability was associated with a reduction in SAB rates and a sustained downward trend over time. While these changes did not reach conventional thresholds for statistical significance, the magnitude and direction of effects, together with qualitative feedback on improved collaboration and targeted prevention strategies, indicate potential for broader application.

血流感染(bsi)是医疗保健相关发病率和死亡率的主要原因,其中很大一部分是可以预防的。尽管如此,脑梗死仍然很常见,尤其是在澳大利亚的医院。昆士兰亚历山德拉公主医院(PAH)实施了一项监测计划,重点关注脑损伤的可预防性,通过持续的循环、实时的审计反馈,向临床医生传授可预防的因素和可能的措施。本研究评估了该计划的实施和对减少感染的影响。方法:采用I型实施-有效性混合设计,结合2002年至2023年BSI数据的中断时间序列分析,以及与感染管理服务团队成员和病房临床医生的焦点小组讨论。中断时间序列分析用于评估2011年11月推出的金黄色葡萄球菌菌血症(SAB)预防举措的影响。统计分析采用具有稳健标准误差的负二项回归分段回归。焦点小组数据通过实施研究综合框架(CFIR)进行分析。结果:干预导致SAB月发病率立即下降,但无显著性(发病率比,IRR = 0.839, 95% CI: 0.653-1.078),干预后每月发病率也有下降趋势(IRR = 0.998, 95% CI: 0.996-1.000)。焦点小组反馈确定了促成因素,包括有效的协作和挑战,例如需要处理不一致的文档和对项目意图的不同看法。讨论:该项目对可预防性的关注与SAB率的降低和持续下降趋势有关。虽然这些变化没有达到统计显著性的常规阈值,但影响的幅度和方向,以及对改进的合作和有针对性的预防战略的定性反馈,表明有可能得到更广泛的应用。
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引用次数: 0
Longitudinal evaluation of a multimodal hand hygiene intervention in improving healthcare worker compliance: a three-year quasi-experimental study at a cardiac specialty hospital in Karachi, Pakistan. 多模式手部卫生干预改善医护人员依从性的纵向评价:巴基斯坦卡拉奇一家心脏专科医院为期三年的准实验研究。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-17 DOI: 10.1186/s13756-025-01689-1
Shaheen Asif, Moiz Ahmed Khan, Victor Basheer, Margaret Palous, Nassim Sheraz

Background: Healthcare-associated infections pose a major challenge in developing countries, with hand hygiene (HH) compliance being the most critical preventive measure. Despite WHO recommendations, HH compliance in Pakistani healthcare settings remains suboptimal. This study aimed to evaluate the effectiveness of a WHO-based multimodal HH improvement intervention in enhancing compliance among healthcare workers at Tabba Heart Institute, Karachi, from 2022 to 2024.

Methods: A quasi-experimental before-and-after study was conducted in three phases: baseline assessment (Jan-Dec 2022), intervention implementation (Jan-Dec 2023), and post-intervention evaluation (Jan-Jun 2024). The multimodal intervention included system changes, educational training, monitoring with feedback, workplace reminders, and institutional safety climate enhancement. Trained observers used the WHO HH observation tool to record 9460 HH opportunities across physicians, nurses, and allied healthcare staff.

Results: HH compliance improved significantly from 68.0 in 2022 to 71.0% in 2023, with sustained improvement reaching 85.5% in 2024. Compliant HH actions increased from 3082/4532 opportunities in 2022 to 1150/1344 in 2024. Monthly compliance rates showed consistent upward trends, peaking in early 2024. Nurses demonstrated the highest compliance, followed by physicians and allied staff.

Conclusion: The WHO multimodal HH strategy effectively and sustainably improved HH compliance at our institution, achieving a 17.5% increase over three years. This demonstrates the feasibility and impact of systematic quality improvement interventions in resource-limited healthcare settings.

背景:在发展中国家,卫生保健相关感染是一个重大挑战,遵守手卫生(HH)是最关键的预防措施。尽管有世卫组织的建议,巴基斯坦卫生保健机构的卫生保健依从性仍然不够理想。本研究旨在评估2022年至2024年在卡拉奇Tabba心脏研究所开展的以世卫组织为基础的多模式HH改善干预措施在提高医护人员依从性方面的有效性。方法:分基线评估(2022年1 - 12月)、干预实施(2023年1 - 12月)和干预后评估(2024年1 - 6月)三个阶段进行准实验前后研究。多模式干预包括系统改变、教育培训、反馈监测、工作场所提醒和机构安全气候增强。训练有素的观察员使用世卫组织HH观察工具记录了9460次医生、护士和相关医护人员的HH机会。结果:HH依从性从2022年的68.0显著改善至2023年的71.0%,并持续改善至2024年的85.5%。合规HH行动从2022年的3082/4532个机会增加到2024年的1150/1344个机会。月度合规率呈持续上升趋势,并在2024年初达到峰值。护士表现出最高的依从性,其次是医生和相关人员。结论:世卫组织多式联运医疗保健战略有效且可持续地改善了我院的医疗保健依从性,在三年内实现了17.5%的增长。这证明了在资源有限的医疗环境中系统的质量改进干预的可行性和影响。
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引用次数: 0
Point-prevalence of healthcare-associated infections and antimicrobial use in a tertiary hospital in Shanghai, China: 2012-2023. 2012-2023年中国上海某三级医院卫生保健相关感染和抗菌药物使用的点流行率
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-17 DOI: 10.1186/s13756-026-01699-7
Ya Yang, Ruihong Shen, Feng Lu, Bingchao Cai, Mei Huang, Jiayan Ding, Yayun Yuan, Xiaobo Gui, Sijin Yan, Luyao Li, Shiwen Huang, Xiaofang Fu, Haiqun Ban, Xingrong Gong, Zheng Wang

Background: Healthcare-associated infections (HAIs) are a global public health issue and a major threat to patient safety. This study aimed to estimate the prevalence of HAIs and antimicrobial use in a tertiary hospital in Shanghai, China.

Methods: Point-prevalence surveys were conducted annually from 2012 to 2023. All inpatients present on the survey day were included. Data were analyzed to identify trends and patterns in the prevalence of HAIs and antimicrobial use.

Results: The overall prevalence of HAIs was 3.97%, with significant variations observed across departments, age groups and patient populations, whether undergoing surgery or not. There was a significant upward trend in surgical wards from 3.97% in 2012 to 4.82% in 2023 (β = 0.135, P = 0.003). The prevalence of catheter-associated urinary tract infection showed a significant decreasing trend (β = - 0.032, P < 0.001). There was an increasing trend in the proportion of patients receiving single-agent antimicrobial use for prophylactic and therapeutic purposes. The most frequently isolated pathogens were Acinetobacter baumannii, Klebsiella pneumoniae, and Escherichia coli, which exhibited high rates of resistance to carbapenems.

Conclusion: Despite some progress, challenges regarding HAIs and antimicrobial resistance persist in a tertiary care setting. The findings highlight the necessity for targeted infection control measures and robust antimicrobial stewardship programs to mitigate the burden of HAIs and optimize antimicrobial use.

背景:医疗保健相关感染(HAIs)是一个全球性的公共卫生问题,也是对患者安全的主要威胁。本研究旨在评估中国上海某三级医院HAIs患病率和抗菌药物使用情况。方法:2012 - 2023年每年进行点患病率调查。调查当日所有住院患者均被纳入。对数据进行分析,以确定HAIs患病率和抗菌药物使用的趋势和模式。结果:HAIs的总体患病率为3.97%,在不同科室、不同年龄组、不同患者人群中,不论是否接受手术均存在显著差异。外科病房的住院率由2012年的3.97%上升至2023年的4.82% (β = 0.135, P = 0.003)。结论:尽管取得了一些进展,但三级医疗机构在尿路感染和抗菌药物耐药性方面仍然存在挑战。研究结果强调了有针对性的感染控制措施和强有力的抗菌药物管理规划的必要性,以减轻HAIs的负担并优化抗菌药物的使用。
{"title":"Point-prevalence of healthcare-associated infections and antimicrobial use in a tertiary hospital in Shanghai, China: 2012-2023.","authors":"Ya Yang, Ruihong Shen, Feng Lu, Bingchao Cai, Mei Huang, Jiayan Ding, Yayun Yuan, Xiaobo Gui, Sijin Yan, Luyao Li, Shiwen Huang, Xiaofang Fu, Haiqun Ban, Xingrong Gong, Zheng Wang","doi":"10.1186/s13756-026-01699-7","DOIUrl":"https://doi.org/10.1186/s13756-026-01699-7","url":null,"abstract":"<p><strong>Background: </strong>Healthcare-associated infections (HAIs) are a global public health issue and a major threat to patient safety. This study aimed to estimate the prevalence of HAIs and antimicrobial use in a tertiary hospital in Shanghai, China.</p><p><strong>Methods: </strong>Point-prevalence surveys were conducted annually from 2012 to 2023. All inpatients present on the survey day were included. Data were analyzed to identify trends and patterns in the prevalence of HAIs and antimicrobial use.</p><p><strong>Results: </strong>The overall prevalence of HAIs was 3.97%, with significant variations observed across departments, age groups and patient populations, whether undergoing surgery or not. There was a significant upward trend in surgical wards from 3.97% in 2012 to 4.82% in 2023 (β = 0.135, P = 0.003). The prevalence of catheter-associated urinary tract infection showed a significant decreasing trend (β = - 0.032, P < 0.001). There was an increasing trend in the proportion of patients receiving single-agent antimicrobial use for prophylactic and therapeutic purposes. The most frequently isolated pathogens were Acinetobacter baumannii, Klebsiella pneumoniae, and Escherichia coli, which exhibited high rates of resistance to carbapenems.</p><p><strong>Conclusion: </strong>Despite some progress, challenges regarding HAIs and antimicrobial resistance persist in a tertiary care setting. The findings highlight the necessity for targeted infection control measures and robust antimicrobial stewardship programs to mitigate the burden of HAIs and optimize antimicrobial use.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145994260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ward microclimate and procedural factors as predictors for CRAB environmental contamination in ICUs: a longitudinal monitoring study. icu病房小气候和程序因素作为螃蟹环境污染的预测因子:一项纵向监测研究。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-11 DOI: 10.1186/s13756-025-01695-3
Yu Miao, Hong-Hui Ding, Cheng-Bo Wang, Yan-Fang Liang, Chuan Xu, Cong Shi, Wei-Jun Peng, Li Tan

Background: Carbapenem-resistant Acinetobacter baumannii (CRAB) has emerged as a pivotal pathogen contributing to healthcare-associated infections. Identifying environmental risk factors associated with CRAB contamination is critical.

Objectives: To assess the associations of ward microclimate and procedure duration with CRAB contamination risks.

Methods: High-touch environment and exposure surface, and air samples were repeatedly measured. A total of 2330 high-touch environment surfaces, 345 exposure surfaces, and 366 air samples were collected. The generalized linear mixed-effects model and additive interaction analysis were employed to examine the associations of ward microclimate and procedural factors with environmental CRAB contamination risks.

Results: We found that compared to procedures lasting ≤15min, those lasting >15min were related to higher risks of CRAB contamination (OR: 1.435, 95% CI: 1.052, 1.954). Compared to the standard environmental conditions (22.5-25.5 °C for temperature and 30-60% for humidity), lower temperature (<22.5 °C) and lower humidity (<30%) were associated with increased CRAB contamination risks (ORs:1.568 and 1.602). However, there was no significant association between high temperature (>25.5°C) or high humidity (>60%) and CRAB contamination risks. The combination of lower temperature or humidity with prolonged procedures showed synergistical interaction on increased risks of CRAB contamination. Additionally, CRAB was consistently detected in air across all sampling scenarios (static conditions, real-time nursing care procedures, and real-time sanitation), with the nursing care procedures group showing the highest detection rate (29.66% vs. 13.95% for static conditions and 8.33% for real-time sanitation).

Conclusions: Temperature and humidity below standard thresholds, combined with prolonged procedures were associated with an increased risk of environmental CRAB contamination in ICUs.

背景:耐碳青霉烯鲍曼不动杆菌(螃蟹)已成为一种关键病原体,有助于卫生保健相关感染。确定与螃蟹污染有关的环境风险因素至关重要。目的:评估病房小气候和手术时间与螃蟹污染风险的关系。方法:对高接触环境和暴露面、空气样品进行反复测定。共采集高接触环境面2330个,暴露面345个,空气样本366个。采用广义线性混合效应模型和加性相互作用分析,考察了病房小气候和程序因素与环境螃蟹污染风险的关系。结果:我们发现,与持续时间≤15min的手术相比,持续时间≤15min的手术发生螃蟹污染的风险更高(OR: 1.435, 95% CI: 1.052, 1.954)。与标准环境条件(温度22.5-25.5℃,湿度30-60%)相比,较低温度(25.5℃)或较高湿度(>60%)和CRAB污染风险。较低的温度或湿度与较长时间的过程相结合,对螃蟹污染风险的增加显示出协同作用。此外,在所有采样场景(静态条件、实时护理程序和实时卫生)中,空气中都能检测到螃蟹,护理程序组的检出率最高(29.66%,静态条件为13.95%,实时卫生为8.33%)。结论:温度和湿度低于标准阈值,加上手术时间延长与icu环境螃蟹污染风险增加有关。
{"title":"Ward microclimate and procedural factors as predictors for CRAB environmental contamination in ICUs: a longitudinal monitoring study.","authors":"Yu Miao, Hong-Hui Ding, Cheng-Bo Wang, Yan-Fang Liang, Chuan Xu, Cong Shi, Wei-Jun Peng, Li Tan","doi":"10.1186/s13756-025-01695-3","DOIUrl":"https://doi.org/10.1186/s13756-025-01695-3","url":null,"abstract":"<p><strong>Background: </strong>Carbapenem-resistant Acinetobacter baumannii (CRAB) has emerged as a pivotal pathogen contributing to healthcare-associated infections. Identifying environmental risk factors associated with CRAB contamination is critical.</p><p><strong>Objectives: </strong>To assess the associations of ward microclimate and procedure duration with CRAB contamination risks.</p><p><strong>Methods: </strong>High-touch environment and exposure surface, and air samples were repeatedly measured. A total of 2330 high-touch environment surfaces, 345 exposure surfaces, and 366 air samples were collected. The generalized linear mixed-effects model and additive interaction analysis were employed to examine the associations of ward microclimate and procedural factors with environmental CRAB contamination risks.</p><p><strong>Results: </strong>We found that compared to procedures lasting ≤15min, those lasting >15min were related to higher risks of CRAB contamination (OR: 1.435, 95% CI: 1.052, 1.954). Compared to the standard environmental conditions (22.5-25.5 °C for temperature and 30-60% for humidity), lower temperature (<22.5 °C) and lower humidity (<30%) were associated with increased CRAB contamination risks (ORs:1.568 and 1.602). However, there was no significant association between high temperature (>25.5°C) or high humidity (>60%) and CRAB contamination risks. The combination of lower temperature or humidity with prolonged procedures showed synergistical interaction on increased risks of CRAB contamination. Additionally, CRAB was consistently detected in air across all sampling scenarios (static conditions, real-time nursing care procedures, and real-time sanitation), with the nursing care procedures group showing the highest detection rate (29.66% vs. 13.95% for static conditions and 8.33% for real-time sanitation).</p><p><strong>Conclusions: </strong>Temperature and humidity below standard thresholds, combined with prolonged procedures were associated with an increased risk of environmental CRAB contamination in ICUs.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145951143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High efficiency of 70% isopropanol in reducing microbial contamination on healthcare workers' smartphone surfaces: a pre-post study in Peru. 70%异丙醇在减少卫生保健工作者智能手机表面微生物污染方面的高效率:秘鲁的一项前后研究。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-10 DOI: 10.1186/s13756-025-01692-6
Elizabeth Torres-Lévano, Jeel Moya-Salazar, Jair Li, Michelle Lozada-Urbano, Jaime Rosales-Rimache

Introduction: Poor cleaning practices for healthcare workers' mobile phones can promote microbial contamination, posing a latent risk of infections for patients. Despite widespread mobile phone use in healthcare environments, evidence on the effectiveness of disinfection methods in low and middle-income countries remains limited.

Objective: To evaluate the disinfectant capacity of 70% isopropanol on the surface of healthcare workers' smartphones in a Peruvian hospital in 2023.

Methods: We designed a pre-post study to collect demographic, occupational, and phone usage information, along with microbiological culture analysis results before and after cleaning with 70% isopropanol.

Results: We evaluated 178 mobile phones from healthcare workers, 90.5% (95%CI: 85.1-94.0%) of which showed microbiological contamination. The most frequently isolated microorganism was Staphylococcus aureus (41.0%), followed by Enterococcus sp. (14.9%) and Staphylococcus epidermidis (9.9%). Antibiogram analysis revealed high resistance rates to ampicillin. No factors were associated with microbial contamination on phones. A significant reduction in microbiological contamination was observed (90.4% to 14.0%, p < 0.001) after cleaning with 70% isopropanol. Colony counts significantly decreased from 73.4 ± 31.8 CFU/cm2 to 3.9 ± 11.0 CFU/cm2 (p < 0.001).

Conclusion: The disinfectant capacity of 70% isopropanol on healthcare workers' smartphone surfaces is highly effective, resulting in an approximately fivefold reduction in contamination rates.

导言:卫生保健工作者手机的不良清洁做法可促进微生物污染,对患者构成潜在的感染风险。尽管移动电话在卫生保健环境中广泛使用,但在低收入和中等收入国家,关于消毒方法有效性的证据仍然有限。目的:评价2023年秘鲁某医院医务人员智能手机表面70%异丙醇的消毒液容量。方法:我们设计了一项前后研究,收集人口统计、职业和电话使用信息,以及70%异丙醇清洁前后的微生物培养分析结果。结果:我们评估了178个卫生工作者的手机,其中90.5% (95%CI: 85.1-94.0%)显示微生物污染。分离频率最高的微生物是金黄色葡萄球菌(41.0%),其次是肠球菌(14.9%)和表皮葡萄球菌(9.9%)。抗生素谱分析显示氨苄西林耐药率高。没有任何因素与手机上的微生物污染有关。结论:70%异丙醇消毒剂对医护人员智能手机表面的消毒效果良好,可使污染发生率降低约5倍。
{"title":"High efficiency of 70% isopropanol in reducing microbial contamination on healthcare workers' smartphone surfaces: a pre-post study in Peru.","authors":"Elizabeth Torres-Lévano, Jeel Moya-Salazar, Jair Li, Michelle Lozada-Urbano, Jaime Rosales-Rimache","doi":"10.1186/s13756-025-01692-6","DOIUrl":"https://doi.org/10.1186/s13756-025-01692-6","url":null,"abstract":"<p><strong>Introduction: </strong>Poor cleaning practices for healthcare workers' mobile phones can promote microbial contamination, posing a latent risk of infections for patients. Despite widespread mobile phone use in healthcare environments, evidence on the effectiveness of disinfection methods in low and middle-income countries remains limited.</p><p><strong>Objective: </strong>To evaluate the disinfectant capacity of 70% isopropanol on the surface of healthcare workers' smartphones in a Peruvian hospital in 2023.</p><p><strong>Methods: </strong>We designed a pre-post study to collect demographic, occupational, and phone usage information, along with microbiological culture analysis results before and after cleaning with 70% isopropanol.</p><p><strong>Results: </strong>We evaluated 178 mobile phones from healthcare workers, 90.5% (95%CI: 85.1-94.0%) of which showed microbiological contamination. The most frequently isolated microorganism was Staphylococcus aureus (41.0%), followed by Enterococcus sp. (14.9%) and Staphylococcus epidermidis (9.9%). Antibiogram analysis revealed high resistance rates to ampicillin. No factors were associated with microbial contamination on phones. A significant reduction in microbiological contamination was observed (90.4% to 14.0%, p < 0.001) after cleaning with 70% isopropanol. Colony counts significantly decreased from 73.4 ± 31.8 CFU/cm<sup>2</sup> to 3.9 ± 11.0 CFU/cm<sup>2</sup> (p < 0.001).</p><p><strong>Conclusion: </strong>The disinfectant capacity of 70% isopropanol on healthcare workers' smartphone surfaces is highly effective, resulting in an approximately fivefold reduction in contamination rates.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145942043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Practices and perspectives on antimicrobial drug misuse in Southern Ethiopia: a mixed-method study, 2024. 埃塞俄比亚南部抗菌药物滥用的实践和观点:一项混合方法研究,2024。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2026-01-01 DOI: 10.1186/s13756-025-01688-2
Getachew Nigussie Bolado, Eshetu Elfios Endrias, Bizuayehu Atinafu Ataro, Agumas Shibabaw Ayana, Habtamu Hurisa, Habtamu Bekele, Worku Mimani Minuta

Background: Antimicrobial resistance refers to the ability of microorganisms to become resistant to antibiotics, fungicides, and other antimicrobial agents, which are essential for treating illnesses in humans, land and water-based animals, and plants. This issue is quickly emerging as a major danger to health, economic stability, and livelihoods. One notable driver of these resistant microorganisms is the misuse of antimicrobial medications.

Objective: To assess the practices and perspectives on antimicrobial drug misuse in Wolaita Zone, 2024.

Methods: This study employed a community-based cross-sectional mixed-methods design. The study data were collected from 423 community residents for the quantitative phase and 15 participants for the qualitative phase, data collection for the quantitative component was collected using structured interview-administered questionnaires, and the qualitative component involved in-depth interviews with purposively selected participants, guided by a structured interview. Quantitative data management involved the use of EpiData V4.6 and the Statistical Package for the Social Sciences for data entry and analysis, respectively. The qualitative data underwent thematic analysis utilizing OpenCode software, a qualitative data analysis tool.

Results: In this study, the quantitative data found that 67.1% of participants misused antimicrobial drugs. The factors significantly associated with the misuse of antimicrobial drugs included educational status [AOR: 1.91 (95% CI: 0.93-2.11)], drug cost [AOR: 3.22 (95% CI: 1.18-5.3)], knowledge regarding the use of antimicrobial drugs [AOR: 2.23 (95% CI: 1.66-4.01)], and adherence to stewardship guidelines [AOR: 3.37 (95% CI: 2.44-9.24)]. Additionally, the qualitative study identified four key themes from the data analysis namely, factors related to drug providers, patient-driven factors, sociocultural influences, and limitations in regulatory and policy frameworks.

Conclusion: The study reveals a troubling rate of antimicrobial drug misuse among the population. The finding underscores the urgent need to address the gaps and barriers that impede proper use of antimicrobial drugs. It is recommended that government and non-government health sectors, along with relevant stakeholders, implement educational initiatives and health campaigns to combat this problem.

背景:抗菌素耐药性是指微生物对抗生素、杀菌剂和其他抗菌素产生耐药性的能力,这些抗菌素对于治疗人类、陆地和水生动物和植物的疾病至关重要。这一问题正迅速成为对健康、经济稳定和生计的重大威胁。这些耐药微生物的一个显著驱动因素是滥用抗菌药物。目的:评价2024年沃莱塔地区抗菌药物滥用的实践与展望。方法:本研究采用基于社区的横截面混合方法设计。定量阶段的研究数据来自423名社区居民,定性阶段的研究数据来自15名参与者,定量部分的数据收集采用结构化访谈式问卷收集,定性部分的数据收集采用结构化访谈指导下对有目的选择的参与者进行深度访谈。定量数据管理涉及使用EpiData V4.6和社会科学统计软件包分别进行数据输入和分析。利用定性数据分析工具OpenCode软件对定性数据进行专题分析。结果:在本研究中,定量数据发现67.1%的参与者滥用抗菌药物。与抗菌药物滥用显著相关的因素包括教育程度[AOR: 1.91 (95% CI: 0.93-2.11)]、药品成本[AOR: 3.22 (95% CI: 1.18-5.3)]、抗菌药物使用知识[AOR: 2.23 (95% CI: 1.66-4.01)]和遵守管理指南[AOR: 3.37 (95% CI: 2.44-9.24)]。此外,定性研究从数据分析中确定了四个关键主题,即与药物提供者相关的因素、患者驱动因素、社会文化影响以及监管和政策框架的局限性。结论:该研究揭示了人群中令人不安的抗菌药物滥用率。这一发现强调迫切需要解决妨碍正确使用抗菌药物的差距和障碍。建议政府和非政府卫生部门与相关利益攸关方一道实施教育倡议和卫生运动,以解决这一问题。
{"title":"Practices and perspectives on antimicrobial drug misuse in Southern Ethiopia: a mixed-method study, 2024.","authors":"Getachew Nigussie Bolado, Eshetu Elfios Endrias, Bizuayehu Atinafu Ataro, Agumas Shibabaw Ayana, Habtamu Hurisa, Habtamu Bekele, Worku Mimani Minuta","doi":"10.1186/s13756-025-01688-2","DOIUrl":"10.1186/s13756-025-01688-2","url":null,"abstract":"<p><strong>Background: </strong>Antimicrobial resistance refers to the ability of microorganisms to become resistant to antibiotics, fungicides, and other antimicrobial agents, which are essential for treating illnesses in humans, land and water-based animals, and plants. This issue is quickly emerging as a major danger to health, economic stability, and livelihoods. One notable driver of these resistant microorganisms is the misuse of antimicrobial medications.</p><p><strong>Objective: </strong>To assess the practices and perspectives on antimicrobial drug misuse in Wolaita Zone, 2024.</p><p><strong>Methods: </strong>This study employed a community-based cross-sectional mixed-methods design. The study data were collected from 423 community residents for the quantitative phase and 15 participants for the qualitative phase, data collection for the quantitative component was collected using structured interview-administered questionnaires, and the qualitative component involved in-depth interviews with purposively selected participants, guided by a structured interview. Quantitative data management involved the use of EpiData V4.6 and the Statistical Package for the Social Sciences for data entry and analysis, respectively. The qualitative data underwent thematic analysis utilizing OpenCode software, a qualitative data analysis tool.</p><p><strong>Results: </strong>In this study, the quantitative data found that 67.1% of participants misused antimicrobial drugs. The factors significantly associated with the misuse of antimicrobial drugs included educational status [AOR: 1.91 (95% CI: 0.93-2.11)], drug cost [AOR: 3.22 (95% CI: 1.18-5.3)], knowledge regarding the use of antimicrobial drugs [AOR: 2.23 (95% CI: 1.66-4.01)], and adherence to stewardship guidelines [AOR: 3.37 (95% CI: 2.44-9.24)]. Additionally, the qualitative study identified four key themes from the data analysis namely, factors related to drug providers, patient-driven factors, sociocultural influences, and limitations in regulatory and policy frameworks.</p><p><strong>Conclusion: </strong>The study reveals a troubling rate of antimicrobial drug misuse among the population. The finding underscores the urgent need to address the gaps and barriers that impede proper use of antimicrobial drugs. It is recommended that government and non-government health sectors, along with relevant stakeholders, implement educational initiatives and health campaigns to combat this problem.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":"18"},"PeriodicalIF":4.4,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12865961/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145877518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Intestinal colonisation with extended-spectrum beta-lactamase-producing Enterobacterales and the impact of selected factors on intestinal colonisation duration: a prospective cohort study. 产广谱β -内酰胺酶肠杆菌的肠道定植和选定因素对肠道定植持续时间的影响:一项前瞻性队列研究
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-31 DOI: 10.1186/s13756-025-01685-5
Dragana Drinković, David Holland, Lifeng Zhou, Susan Taylor, Hasan Bhally, Arlo Upton, Scott Beatson, Simon Briggs

Introduction: We conducted a prospective cohort study of patients with newly acquired extended-spectrum beta-lactamase-producing Enterobacterales (ESBLPE) intestinal colonisation (termed "ESBLPE colonisation") in two public hospitals between January 2013 and October 2016. We evaluated the duration of ESBLPE colonisation and the impact of selected factors on this duration.

Methods: Patient data and faeces samples were collected on enrolment and three monthly for 2 years. Standard laboratory methods were used for ESBLPE identification and susceptibility testing. Whole-genome sequencing of isolates was performed determining sequence type, plasmid replicons, antimicrobial resistance genes, virulence factor genes and phylogenetic relationships.

Results: The median duration of ESBLPE colonisation for the 102 patients was 544 days (range 77-730 days, interquartile range 220-730 days). After one year and at the end of follow up, 61% and 23.4% of patients respectively remained ESBLPE colonised. The same strain of ESBLPE, colonised 70.2% (33/47) patients colonised with Escherichia coli and 70.7% (29/42) patients colonised with Klebsiella pneumoniae. Prolonged ESBLPE colonisation was associated with age ≥ 75 years (HR 0.46, 95% CI 0.23-0.90), an increased intensity of hospitalisation (P = 0.0036), E. coli phylogroup B2 (P = 0.0142), E. coli harbouring blaCTX-M-15 (P < 0.0001), colonisation with more than one species of ESBLPE (P = 0.0023) and colonisation with more than one E. coli Sequence Type (P = 0.0042).

Conclusions: It is likely that combinations of multiple patient and bacterial factors influence the duration of ESBLPE colonisation. This prolonged duration of ESBLPE colonisation highlights the importance of infection control and public health measures to decrease the acquisition and spread of ESBLPE.

2013年1月至2016年10月,我们在两家公立医院对新获得的广谱β -内酰胺酶产肠杆菌(ESBLPE)肠道定植(称为“ESBLPE定植”)患者进行了一项前瞻性队列研究。我们评估了ESBLPE定殖的持续时间以及选定的因素对这一持续时间的影响。方法:随访2年,每3个月收集一次患者资料和粪便样本。采用标准实验室方法进行ESBLPE鉴定和药敏试验。对分离株进行全基因组测序,确定序列类型、质粒复制子、耐药基因、毒力因子基因和系统发育关系。结果:102例患者ESBLPE定殖的中位持续时间为544天(范围77-730天,四分位数间范围220-730天)。随访一年后和随访结束时,分别有61%和23.4%的患者仍有ESBLPE定植。70.2%(33/47)的患者感染大肠埃希菌,70.7%(29/42)的患者感染肺炎克雷伯菌。ESBLPE定殖时间延长与年龄≥75岁(HR 0.46, 95% CI 0.23-0.90)、住院治疗强度增加(P = 0.0036)、大肠杆菌系统群B2 (P = 0.0142)、大肠杆菌携带blaCTX-M-15 (P)相关。结论:多种患者和细菌因素的组合可能影响ESBLPE定殖时间。ESBLPE定殖时间的延长突出了控制感染和采取公共卫生措施以减少ESBLPE的获得和传播的重要性。
{"title":"Intestinal colonisation with extended-spectrum beta-lactamase-producing Enterobacterales and the impact of selected factors on intestinal colonisation duration: a prospective cohort study.","authors":"Dragana Drinković, David Holland, Lifeng Zhou, Susan Taylor, Hasan Bhally, Arlo Upton, Scott Beatson, Simon Briggs","doi":"10.1186/s13756-025-01685-5","DOIUrl":"10.1186/s13756-025-01685-5","url":null,"abstract":"<p><strong>Introduction: </strong>We conducted a prospective cohort study of patients with newly acquired extended-spectrum beta-lactamase-producing Enterobacterales (ESBLPE) intestinal colonisation (termed \"ESBLPE colonisation\") in two public hospitals between January 2013 and October 2016. We evaluated the duration of ESBLPE colonisation and the impact of selected factors on this duration.</p><p><strong>Methods: </strong>Patient data and faeces samples were collected on enrolment and three monthly for 2 years. Standard laboratory methods were used for ESBLPE identification and susceptibility testing. Whole-genome sequencing of isolates was performed determining sequence type, plasmid replicons, antimicrobial resistance genes, virulence factor genes and phylogenetic relationships.</p><p><strong>Results: </strong>The median duration of ESBLPE colonisation for the 102 patients was 544 days (range 77-730 days, interquartile range 220-730 days). After one year and at the end of follow up, 61% and 23.4% of patients respectively remained ESBLPE colonised. The same strain of ESBLPE, colonised 70.2% (33/47) patients colonised with Escherichia coli and 70.7% (29/42) patients colonised with Klebsiella pneumoniae. Prolonged ESBLPE colonisation was associated with age ≥ 75 years (HR 0.46, 95% CI 0.23-0.90), an increased intensity of hospitalisation (P = 0.0036), E. coli phylogroup B2 (P = 0.0142), E. coli harbouring bla<sub>CTX-M-15</sub> (P < 0.0001), colonisation with more than one species of ESBLPE (P = 0.0023) and colonisation with more than one E. coli Sequence Type (P = 0.0042).</p><p><strong>Conclusions: </strong>It is likely that combinations of multiple patient and bacterial factors influence the duration of ESBLPE colonisation. This prolonged duration of ESBLPE colonisation highlights the importance of infection control and public health measures to decrease the acquisition and spread of ESBLPE.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":"17"},"PeriodicalIF":4.4,"publicationDate":"2025-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12866355/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145861772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Local translation of national guidance on discontinuing COVID-19 isolation into hospital policies results in considerable differences. 地方将国家关于停止COVID-19隔离的指导意见转化为医院政策,结果存在很大差异。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-29 DOI: 10.1186/s13756-025-01664-w
Cynthia P Haanappel, Juliëtte A Severin, Karin Ellen Veldkamp, Jean-Luc Murk, Anne J G Mutsaers van Oudheusden, Emile Schippers, Matthew B B McCall, Carla van Tienen, Jeroen J A van Kampen, Marion P G Koopmans, Rob Klont, Bastiaan E Kellerhuis, Kevin Jenniskens, Johannes B Reitsma, Margreet C Vos, Anne F Voor In 't Holt

Background: The COVID-19 pandemic underscored the vital role of infection prevention and control (IPC) policies in hospitals to protect patients and healthcare workers. National guidance documents have traditionally provided a framework for local IPC policy development. This study aimed to examine the translation of the Dutch national COVID-19 IPC guidance documents into local Dutch hospital policies, specifically focusing on discontinuing isolation measures for COVID-19 patients.

Methods: This multicentre retrospective study investigated the IPC policies of seven Dutch hospitals, of which three academic hospitals and four non-academic hospitals. IPC practitioners collected data from hospitals' (archived) IPC policy guidelines implemented between March 2020 and December 2021. A composite index based on the criteria for discontinuation of isolation measures for COVID-19 patients was created to capture variation in policy translation within and across hospitals over time, relative to the national guidance document. Using this index, a descriptive analysis was performed to assess the extent to which hospitals adopted the national guidance for discontinuing isolation measures for specific patient groups.

Results: The national COVID-19 IPC guidance document for discontinuing isolation measures established targeted criteria for six patient groups, and included criteria based upon days since symptom onset, symptoms, symptom-free period, and RT-PCR results. Hospitals distinguished 16 patient groups. While the national guidance was updated regularly, the criteria for discontinuing isolation measures changed once; the frequency of local hospital updates ranged from four to 12 times. Policy variation was observed both within and across local hospital policies over time. Local hospital policies tended to be less strict for patients on ventilation and/or with a tracheostomy (78% of the time), while for other patient groups, they were more often stricter.

Conclusions: Compared to the national guidance, local hospital guidelines showed more variety in the number of patient groups described as well as more policy changes throughout the first two years of the pandemic. Furthermore, variation was observed within and between hospitals over time. These variations show the complexity of striving for a uniform and unambiguous policy on a national level, and indicate the need for awareness of the presence of variation in settings regarding patient groups and infrastructure.

背景:2019冠状病毒病大流行凸显了医院感染预防和控制(IPC)政策在保护患者和医护人员方面的重要作用。传统上,国家指导文件为地方IPC政策制定提供了框架。本研究旨在研究将荷兰国家COVID-19 IPC指导文件翻译为荷兰当地医院政策,特别关注停止对COVID-19患者的隔离措施。方法:本多中心回顾性研究调查了荷兰7家医院的IPC政策,其中3家学术医院和4家非学术医院。IPC从业者从2020年3月至2021年12月期间实施的医院(存档)IPC政策指南中收集数据。根据停止对COVID-19患者采取隔离措施的标准,创建了一个综合指数,以捕捉相对于国家指导文件,医院内部和医院之间政策翻译随时间的变化。使用该指数,进行了描述性分析,以评估医院采用停止对特定患者群体采取隔离措施的国家指南的程度。结果:国家COVID-19 IPC停止隔离措施指导文件建立了6组患者的针对性标准,包括基于症状出现天数、症状、无症状时间和RT-PCR结果的标准。医院区分了16个患者组。虽然国家指南定期更新,但停止隔离措施的标准只更改了一次;当地医院的更新频率从4次到12次不等。随着时间的推移,观察到当地医院政策内部和之间的政策变化。当地医院的政策往往对通气和/或气管切开术的患者不那么严格(78%的时间),而对其他患者群体,他们往往更严格。结论:与国家指南相比,地方医院指南所描述的患者群体数量更多样化,在大流行的头两年,政策变化也更多。此外,随着时间的推移,在医院内部和医院之间也观察到差异。这些差异表明了在国家层面上努力制定统一和明确政策的复杂性,并表明需要认识到患者群体和基础设施方面存在的差异。
{"title":"Local translation of national guidance on discontinuing COVID-19 isolation into hospital policies results in considerable differences.","authors":"Cynthia P Haanappel, Juliëtte A Severin, Karin Ellen Veldkamp, Jean-Luc Murk, Anne J G Mutsaers van Oudheusden, Emile Schippers, Matthew B B McCall, Carla van Tienen, Jeroen J A van Kampen, Marion P G Koopmans, Rob Klont, Bastiaan E Kellerhuis, Kevin Jenniskens, Johannes B Reitsma, Margreet C Vos, Anne F Voor In 't Holt","doi":"10.1186/s13756-025-01664-w","DOIUrl":"10.1186/s13756-025-01664-w","url":null,"abstract":"<p><strong>Background: </strong>The COVID-19 pandemic underscored the vital role of infection prevention and control (IPC) policies in hospitals to protect patients and healthcare workers. National guidance documents have traditionally provided a framework for local IPC policy development. This study aimed to examine the translation of the Dutch national COVID-19 IPC guidance documents into local Dutch hospital policies, specifically focusing on discontinuing isolation measures for COVID-19 patients.</p><p><strong>Methods: </strong>This multicentre retrospective study investigated the IPC policies of seven Dutch hospitals, of which three academic hospitals and four non-academic hospitals. IPC practitioners collected data from hospitals' (archived) IPC policy guidelines implemented between March 2020 and December 2021. A composite index based on the criteria for discontinuation of isolation measures for COVID-19 patients was created to capture variation in policy translation within and across hospitals over time, relative to the national guidance document. Using this index, a descriptive analysis was performed to assess the extent to which hospitals adopted the national guidance for discontinuing isolation measures for specific patient groups.</p><p><strong>Results: </strong>The national COVID-19 IPC guidance document for discontinuing isolation measures established targeted criteria for six patient groups, and included criteria based upon days since symptom onset, symptoms, symptom-free period, and RT-PCR results. Hospitals distinguished 16 patient groups. While the national guidance was updated regularly, the criteria for discontinuing isolation measures changed once; the frequency of local hospital updates ranged from four to 12 times. Policy variation was observed both within and across local hospital policies over time. Local hospital policies tended to be less strict for patients on ventilation and/or with a tracheostomy (78% of the time), while for other patient groups, they were more often stricter.</p><p><strong>Conclusions: </strong>Compared to the national guidance, local hospital guidelines showed more variety in the number of patient groups described as well as more policy changes throughout the first two years of the pandemic. Furthermore, variation was observed within and between hospitals over time. These variations show the complexity of striving for a uniform and unambiguous policy on a national level, and indicate the need for awareness of the presence of variation in settings regarding patient groups and infrastructure.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":"14 1","pages":"153"},"PeriodicalIF":4.4,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12751809/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145853112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic pitfalls in hospital surveillance: unexpected Enterobacter cloacae clustering without epidemiological link highlights the need for cautious core genome MLST analysis interpretation. 医院监测中的基因组陷阱:没有流行病学联系的意外阴沟肠杆菌聚集突出了谨慎的核心基因组MLST分析解释的必要性。
IF 4.4 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-28 DOI: 10.1186/s13756-025-01668-6
Maxime Danjean, Guilhem Royer, Christophe Rodriguez, Paul-Louis Woerther, Jean-Winoc Decousser

Whole-genome sequencing has become a key tool for identifying bacterial cross-transmission in healthcare settings. Among the methods used, core-genome Multi-Locus Sequence Typing (cgMLST) is considered as the reference method owing to its standardization. However, its limitations are often overlooked, particularly for taxonomically complex species such as Enterobacter cloacae. We report a case of false-positive genomic linkage between two E. cloacae isolates recovered from patients hospitalized in different units, four months apart, with no epidemiological overlap. Routine retrospective genomic surveillance using a local cgMLST scheme flagged these isolates as genetically related. However, further analyses based on core-genome Single-Nucleotide Polymorphism (SNPs) calling and molecular phylogeny, including public genomes, revealed that the two isolates belonged to distinct clusters and differed by 99 SNPs. This case illustrates the risk of overinterpreting cgMLST results when applied to species with high genomic heterogeneity and insufficiently robust schemes. These findings highlight the importance of interpreting genomic data within its epidemiological context, and in the case of inconsistency confirming potential links through high-resolution SNP analysis, and developing standardized, species-specific cgMLST schemes.

全基因组测序已成为鉴定卫生保健环境中细菌交叉传播的关键工具。其中,核心基因组多位点序列分型(cgMLST)因其标准化而被认为是参考方法。然而,它的局限性往往被忽视,特别是对于分类复杂的物种,如阴沟肠杆菌。我们报告了一例假阳性基因组连锁的病例,从不同单位住院的患者中分离出的两个阴沟肠杆菌分离株,相隔4个月,没有流行病学重叠。使用当地cgMLST方案进行常规回顾性基因组监测,标记这些分离株具有遗传相关性。然而,基于核心基因组单核苷酸多态性(snp)和分子系统发育(包括公共基因组)的进一步分析显示,两个分离株属于不同的集群,差异为99个snp。这个案例说明了过度解释cgMLST结果的风险,当应用于具有高基因组异质性和不够强大的方案时。这些发现强调了在流行病学背景下解释基因组数据的重要性,在不一致的情况下,通过高分辨率SNP分析确认潜在联系,并制定标准化的物种特异性cgMLST方案。
{"title":"Genomic pitfalls in hospital surveillance: unexpected Enterobacter cloacae clustering without epidemiological link highlights the need for cautious core genome MLST analysis interpretation.","authors":"Maxime Danjean, Guilhem Royer, Christophe Rodriguez, Paul-Louis Woerther, Jean-Winoc Decousser","doi":"10.1186/s13756-025-01668-6","DOIUrl":"10.1186/s13756-025-01668-6","url":null,"abstract":"<p><p>Whole-genome sequencing has become a key tool for identifying bacterial cross-transmission in healthcare settings. Among the methods used, core-genome Multi-Locus Sequence Typing (cgMLST) is considered as the reference method owing to its standardization. However, its limitations are often overlooked, particularly for taxonomically complex species such as Enterobacter cloacae. We report a case of false-positive genomic linkage between two E. cloacae isolates recovered from patients hospitalized in different units, four months apart, with no epidemiological overlap. Routine retrospective genomic surveillance using a local cgMLST scheme flagged these isolates as genetically related. However, further analyses based on core-genome Single-Nucleotide Polymorphism (SNPs) calling and molecular phylogeny, including public genomes, revealed that the two isolates belonged to distinct clusters and differed by 99 SNPs. This case illustrates the risk of overinterpreting cgMLST results when applied to species with high genomic heterogeneity and insufficiently robust schemes. These findings highlight the importance of interpreting genomic data within its epidemiological context, and in the case of inconsistency confirming potential links through high-resolution SNP analysis, and developing standardized, species-specific cgMLST schemes.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":"14 1","pages":"152"},"PeriodicalIF":4.4,"publicationDate":"2025-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12746620/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145848641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Antimicrobial Resistance and Infection Control
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