Pub Date : 2026-01-21DOI: 10.1186/s13756-025-01687-3
Ahmed Azzam, Heba Khaled, Ahmed Salem, Muhamad Sayed, Abdelmarouf Mohieldein, Mohamed S Elsayed, Enas Mohamed Lotfy, Hend H A M Abdullah, Fatma E Hassan, Hassan Marei, Nouran Hassan, Elham Abdulnaby, Gellan Alaa Mohamed Kamel, Ismael Osman, Mohamed Ahmed Reda, Dina Ismail, Mahmoud Nazih, Haitham Salem, Amar Basil, Dina Rady
Background: Methicillin-resistant Staphylococcus aureus (MRSA) is a major public health concern, particularly in resource-limited settings such as Africa. This meta-analysis aimed to determine the proportion of MRSA among S. aureus isolates from patients with confirmed infections and to assess associated antibiotic resistance profiles across the continent.
Methods: A comprehensive literature search was conducted in African Journals Online, African Index Medicus, PubMed, Scopus, Google Scholar, and Web of Science for studies published between January 1, 2013, and June 5, 2024. Primary studies were included if they reported MRSA proportion or resistance profiles in Africa, employed reliable detection techniques, and analyzed clinical specimens from infected patients. Statistical analyses were performed using the meta package in R software, applying a random-effects model. A p-value of < 0.05 was considered statistically significant.
Results: This meta-analysis included 191 studies, encompassing 40,979 S. aureus isolates. Nigeria contributed the highest number of studies (n = 29), followed by Egypt (n = 26). The vast majority of studies (n = 186) were based on hospital settings. The pooled proportion of MRSA in Africa was 42.2% (95% CI 38.7-45.6). By detection method, proportion was 41.4% for mecA, 42.8% for the cefoxitin disc method, and 39.1% for the oxacillin disc method, with no significant differences observed (p = 0.8). Regionally, Northern Africa had a significantly higher proportion of 56.2% (95% CI 49.3-62.9) compared with 36.7% (95% CI 33.2-40.4) in Sub-Saharan Africa (p < 0.001). At the country level, Eritrea reported the highest proportion (71.8%), followed by Egypt (61.8%), while the lowest rates were observed in Malawi (7.0%) and Gabon (8.2%). Regarding MRSA resistance profiles, linezolid (3.4%) and vancomycin (4.7%) showed the lowest resistance rates, whereas higher rates were noted for fusidic acid (11.6%), rifampin (28.4%), clindamycin (40.4%), trimethoprim-sulfamethoxazole (54.5%), and tetracycline (60.2%). Limited data were available for telavancin, dalbavancin, oritavancin, tedizolid, ceftaroline, mupirocin, and daptomycin.
Conclusion: The proportion of MRSA in Africa remains high at 42.2%, with marked regional disparities. Although resistance rates for linezolid and vancomycin are relatively low, they surpass global averages, raising concerns about emerging resistance. Alarmingly high resistance rates to several other antibiotics further underscore the urgent need for targeted interventions and continuous surveillance.
背景:耐甲氧西林金黄色葡萄球菌(MRSA)是一个主要的公共卫生问题,特别是在非洲等资源有限的环境中。本荟萃分析旨在确定从确诊感染患者中分离出的金黄色葡萄球菌中MRSA的比例,并评估整个非洲大陆相关的抗生素耐药性概况。方法:在2013年1月1日至2024年6月5日期间发表的研究中,对非洲期刊在线、非洲索引Medicus、PubMed、Scopus、谷歌Scholar和Web of Science进行全面的文献检索。如果报告了非洲的MRSA比例或耐药谱,采用可靠的检测技术,并分析了感染患者的临床标本,则纳入初级研究。采用随机效应模型,采用R软件中的meta包进行统计分析。结果的p值:该荟萃分析包括191项研究,包括40,979株金黄色葡萄球菌。尼日利亚的研究数量最多(n = 29),其次是埃及(n = 26)。绝大多数研究(n = 186)基于医院环境。MRSA在非洲的总比例为42.2% (95% CI 38.7-45.6)。通过检测方法,mecA的检出率为41.4%,头孢西丁圆盘法的检出率为42.8%,奥西林圆盘法的检出率为39.1%,差异无统计学意义(p = 0.8)。从地区来看,北非的比例为56.2% (95% CI 49.3-62.9),而撒哈拉以南非洲的比例为36.7% (95% CI 33.2-40.4)。(p结论:MRSA在非洲的比例仍然很高,为42.2%,地区差异明显。虽然利奈唑胺和万古霉素的耐药率相对较低,但它们超过了全球平均水平,这引起了人们对新出现的耐药性的担忧。对其他几种抗生素的耐药率高得惊人,进一步强调迫切需要采取有针对性的干预措施和持续监测。
{"title":"Proportion and antibiogram of methicillin-resistant Staphylococcus aureus (MRSA) in Africa: a systematic review and meta-analysis.","authors":"Ahmed Azzam, Heba Khaled, Ahmed Salem, Muhamad Sayed, Abdelmarouf Mohieldein, Mohamed S Elsayed, Enas Mohamed Lotfy, Hend H A M Abdullah, Fatma E Hassan, Hassan Marei, Nouran Hassan, Elham Abdulnaby, Gellan Alaa Mohamed Kamel, Ismael Osman, Mohamed Ahmed Reda, Dina Ismail, Mahmoud Nazih, Haitham Salem, Amar Basil, Dina Rady","doi":"10.1186/s13756-025-01687-3","DOIUrl":"10.1186/s13756-025-01687-3","url":null,"abstract":"<p><strong>Background: </strong>Methicillin-resistant Staphylococcus aureus (MRSA) is a major public health concern, particularly in resource-limited settings such as Africa. This meta-analysis aimed to determine the proportion of MRSA among S. aureus isolates from patients with confirmed infections and to assess associated antibiotic resistance profiles across the continent.</p><p><strong>Methods: </strong>A comprehensive literature search was conducted in African Journals Online, African Index Medicus, PubMed, Scopus, Google Scholar, and Web of Science for studies published between January 1, 2013, and June 5, 2024. Primary studies were included if they reported MRSA proportion or resistance profiles in Africa, employed reliable detection techniques, and analyzed clinical specimens from infected patients. Statistical analyses were performed using the meta package in R software, applying a random-effects model. A p-value of < 0.05 was considered statistically significant.</p><p><strong>Results: </strong>This meta-analysis included 191 studies, encompassing 40,979 S. aureus isolates. Nigeria contributed the highest number of studies (n = 29), followed by Egypt (n = 26). The vast majority of studies (n = 186) were based on hospital settings. The pooled proportion of MRSA in Africa was 42.2% (95% CI 38.7-45.6). By detection method, proportion was 41.4% for mecA, 42.8% for the cefoxitin disc method, and 39.1% for the oxacillin disc method, with no significant differences observed (p = 0.8). Regionally, Northern Africa had a significantly higher proportion of 56.2% (95% CI 49.3-62.9) compared with 36.7% (95% CI 33.2-40.4) in Sub-Saharan Africa (p < 0.001). At the country level, Eritrea reported the highest proportion (71.8%), followed by Egypt (61.8%), while the lowest rates were observed in Malawi (7.0%) and Gabon (8.2%). Regarding MRSA resistance profiles, linezolid (3.4%) and vancomycin (4.7%) showed the lowest resistance rates, whereas higher rates were noted for fusidic acid (11.6%), rifampin (28.4%), clindamycin (40.4%), trimethoprim-sulfamethoxazole (54.5%), and tetracycline (60.2%). Limited data were available for telavancin, dalbavancin, oritavancin, tedizolid, ceftaroline, mupirocin, and daptomycin.</p><p><strong>Conclusion: </strong>The proportion of MRSA in Africa remains high at 42.2%, with marked regional disparities. Although resistance rates for linezolid and vancomycin are relatively low, they surpass global averages, raising concerns about emerging resistance. Alarmingly high resistance rates to several other antibiotics further underscore the urgent need for targeted interventions and continuous surveillance.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":"13"},"PeriodicalIF":4.4,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12849242/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146017254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-17DOI: 10.1186/s13756-025-01696-2
Gregory Merlo, Belinda Henderson, Louise Marquart-Wilson, Elizabeth Underwood, Matthew McDonnell, Naomi Runnegar, Margaret Lindsay, Fiona Caristo, Paola Vasquez Vasquez, Geoffrey Playford, Lisa Hall
Introduction: Bloodstream infections (BSIs) are a leading cause of healthcare-associated morbidity and mortality, with a significant portion being preventable. Despite this, BSIs remain common, particularly in Australian hospitals. Princess Alexandra Hospital (PAH) in Queensland has implemented a surveillance program that focuses on the preventability of BSIs, with continuous loop, real-time audit-feedback to teach clinicians about preventable factors and possible actions. This study evaluated the program's implementation and impact on reducing infections.
Methods: A Type I hybrid implementation-effectiveness design was used, combining interrupted time series analysis of BSI data from 2002 to 2023 and focus group discussions with the Infection Management Service team members and ward-based clinicians. Interrupted time series analysis was used to assess the impact of the Staphylococcus aureus bacteraemia (SAB) prevention initiative introduced in November 2011. Statistical analysis employed segmented regression using negative binomial regression with robust standard errors. Focus group data were analysed via the Consolidated Framework for Implementation Research (CFIR).
Results: The intervention resulted in an immediate, but non-significant, reduction in SAB monthly rates (incidence rate ratio, IRR = 0.839, 95% CI: 0.653-1.078), and a declining trend in monthly rates was also noted postintervention (IRR = 0.998, 95% CI: 0.996-1.000). Focus group feedback identified enablers, including effective collaboration and challenges such as needing to address inconsistent documentation and differing perceptions of the program's intent.
Discussion: The program's focus on preventability was associated with a reduction in SAB rates and a sustained downward trend over time. While these changes did not reach conventional thresholds for statistical significance, the magnitude and direction of effects, together with qualitative feedback on improved collaboration and targeted prevention strategies, indicate potential for broader application.
{"title":"Preventing bloodstream infections through effective surveillance, AUDIT and FEEDBACK: evaluation of a 20-year hospital program using a TYPE I hybrid design.","authors":"Gregory Merlo, Belinda Henderson, Louise Marquart-Wilson, Elizabeth Underwood, Matthew McDonnell, Naomi Runnegar, Margaret Lindsay, Fiona Caristo, Paola Vasquez Vasquez, Geoffrey Playford, Lisa Hall","doi":"10.1186/s13756-025-01696-2","DOIUrl":"https://doi.org/10.1186/s13756-025-01696-2","url":null,"abstract":"<p><strong>Introduction: </strong>Bloodstream infections (BSIs) are a leading cause of healthcare-associated morbidity and mortality, with a significant portion being preventable. Despite this, BSIs remain common, particularly in Australian hospitals. Princess Alexandra Hospital (PAH) in Queensland has implemented a surveillance program that focuses on the preventability of BSIs, with continuous loop, real-time audit-feedback to teach clinicians about preventable factors and possible actions. This study evaluated the program's implementation and impact on reducing infections.</p><p><strong>Methods: </strong>A Type I hybrid implementation-effectiveness design was used, combining interrupted time series analysis of BSI data from 2002 to 2023 and focus group discussions with the Infection Management Service team members and ward-based clinicians. Interrupted time series analysis was used to assess the impact of the Staphylococcus aureus bacteraemia (SAB) prevention initiative introduced in November 2011. Statistical analysis employed segmented regression using negative binomial regression with robust standard errors. Focus group data were analysed via the Consolidated Framework for Implementation Research (CFIR).</p><p><strong>Results: </strong>The intervention resulted in an immediate, but non-significant, reduction in SAB monthly rates (incidence rate ratio, IRR = 0.839, 95% CI: 0.653-1.078), and a declining trend in monthly rates was also noted postintervention (IRR = 0.998, 95% CI: 0.996-1.000). Focus group feedback identified enablers, including effective collaboration and challenges such as needing to address inconsistent documentation and differing perceptions of the program's intent.</p><p><strong>Discussion: </strong>The program's focus on preventability was associated with a reduction in SAB rates and a sustained downward trend over time. While these changes did not reach conventional thresholds for statistical significance, the magnitude and direction of effects, together with qualitative feedback on improved collaboration and targeted prevention strategies, indicate potential for broader application.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145994213","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-17DOI: 10.1186/s13756-025-01689-1
Shaheen Asif, Moiz Ahmed Khan, Victor Basheer, Margaret Palous, Nassim Sheraz
Background: Healthcare-associated infections pose a major challenge in developing countries, with hand hygiene (HH) compliance being the most critical preventive measure. Despite WHO recommendations, HH compliance in Pakistani healthcare settings remains suboptimal. This study aimed to evaluate the effectiveness of a WHO-based multimodal HH improvement intervention in enhancing compliance among healthcare workers at Tabba Heart Institute, Karachi, from 2022 to 2024.
Methods: A quasi-experimental before-and-after study was conducted in three phases: baseline assessment (Jan-Dec 2022), intervention implementation (Jan-Dec 2023), and post-intervention evaluation (Jan-Jun 2024). The multimodal intervention included system changes, educational training, monitoring with feedback, workplace reminders, and institutional safety climate enhancement. Trained observers used the WHO HH observation tool to record 9460 HH opportunities across physicians, nurses, and allied healthcare staff.
Results: HH compliance improved significantly from 68.0 in 2022 to 71.0% in 2023, with sustained improvement reaching 85.5% in 2024. Compliant HH actions increased from 3082/4532 opportunities in 2022 to 1150/1344 in 2024. Monthly compliance rates showed consistent upward trends, peaking in early 2024. Nurses demonstrated the highest compliance, followed by physicians and allied staff.
Conclusion: The WHO multimodal HH strategy effectively and sustainably improved HH compliance at our institution, achieving a 17.5% increase over three years. This demonstrates the feasibility and impact of systematic quality improvement interventions in resource-limited healthcare settings.
{"title":"Longitudinal evaluation of a multimodal hand hygiene intervention in improving healthcare worker compliance: a three-year quasi-experimental study at a cardiac specialty hospital in Karachi, Pakistan.","authors":"Shaheen Asif, Moiz Ahmed Khan, Victor Basheer, Margaret Palous, Nassim Sheraz","doi":"10.1186/s13756-025-01689-1","DOIUrl":"https://doi.org/10.1186/s13756-025-01689-1","url":null,"abstract":"<p><strong>Background: </strong>Healthcare-associated infections pose a major challenge in developing countries, with hand hygiene (HH) compliance being the most critical preventive measure. Despite WHO recommendations, HH compliance in Pakistani healthcare settings remains suboptimal. This study aimed to evaluate the effectiveness of a WHO-based multimodal HH improvement intervention in enhancing compliance among healthcare workers at Tabba Heart Institute, Karachi, from 2022 to 2024.</p><p><strong>Methods: </strong>A quasi-experimental before-and-after study was conducted in three phases: baseline assessment (Jan-Dec 2022), intervention implementation (Jan-Dec 2023), and post-intervention evaluation (Jan-Jun 2024). The multimodal intervention included system changes, educational training, monitoring with feedback, workplace reminders, and institutional safety climate enhancement. Trained observers used the WHO HH observation tool to record 9460 HH opportunities across physicians, nurses, and allied healthcare staff.</p><p><strong>Results: </strong>HH compliance improved significantly from 68.0 in 2022 to 71.0% in 2023, with sustained improvement reaching 85.5% in 2024. Compliant HH actions increased from 3082/4532 opportunities in 2022 to 1150/1344 in 2024. Monthly compliance rates showed consistent upward trends, peaking in early 2024. Nurses demonstrated the highest compliance, followed by physicians and allied staff.</p><p><strong>Conclusion: </strong>The WHO multimodal HH strategy effectively and sustainably improved HH compliance at our institution, achieving a 17.5% increase over three years. This demonstrates the feasibility and impact of systematic quality improvement interventions in resource-limited healthcare settings.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145994212","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-17DOI: 10.1186/s13756-026-01699-7
Ya Yang, Ruihong Shen, Feng Lu, Bingchao Cai, Mei Huang, Jiayan Ding, Yayun Yuan, Xiaobo Gui, Sijin Yan, Luyao Li, Shiwen Huang, Xiaofang Fu, Haiqun Ban, Xingrong Gong, Zheng Wang
Background: Healthcare-associated infections (HAIs) are a global public health issue and a major threat to patient safety. This study aimed to estimate the prevalence of HAIs and antimicrobial use in a tertiary hospital in Shanghai, China.
Methods: Point-prevalence surveys were conducted annually from 2012 to 2023. All inpatients present on the survey day were included. Data were analyzed to identify trends and patterns in the prevalence of HAIs and antimicrobial use.
Results: The overall prevalence of HAIs was 3.97%, with significant variations observed across departments, age groups and patient populations, whether undergoing surgery or not. There was a significant upward trend in surgical wards from 3.97% in 2012 to 4.82% in 2023 (β = 0.135, P = 0.003). The prevalence of catheter-associated urinary tract infection showed a significant decreasing trend (β = - 0.032, P < 0.001). There was an increasing trend in the proportion of patients receiving single-agent antimicrobial use for prophylactic and therapeutic purposes. The most frequently isolated pathogens were Acinetobacter baumannii, Klebsiella pneumoniae, and Escherichia coli, which exhibited high rates of resistance to carbapenems.
Conclusion: Despite some progress, challenges regarding HAIs and antimicrobial resistance persist in a tertiary care setting. The findings highlight the necessity for targeted infection control measures and robust antimicrobial stewardship programs to mitigate the burden of HAIs and optimize antimicrobial use.
背景:医疗保健相关感染(HAIs)是一个全球性的公共卫生问题,也是对患者安全的主要威胁。本研究旨在评估中国上海某三级医院HAIs患病率和抗菌药物使用情况。方法:2012 - 2023年每年进行点患病率调查。调查当日所有住院患者均被纳入。对数据进行分析,以确定HAIs患病率和抗菌药物使用的趋势和模式。结果:HAIs的总体患病率为3.97%,在不同科室、不同年龄组、不同患者人群中,不论是否接受手术均存在显著差异。外科病房的住院率由2012年的3.97%上升至2023年的4.82% (β = 0.135, P = 0.003)。结论:尽管取得了一些进展,但三级医疗机构在尿路感染和抗菌药物耐药性方面仍然存在挑战。研究结果强调了有针对性的感染控制措施和强有力的抗菌药物管理规划的必要性,以减轻HAIs的负担并优化抗菌药物的使用。
{"title":"Point-prevalence of healthcare-associated infections and antimicrobial use in a tertiary hospital in Shanghai, China: 2012-2023.","authors":"Ya Yang, Ruihong Shen, Feng Lu, Bingchao Cai, Mei Huang, Jiayan Ding, Yayun Yuan, Xiaobo Gui, Sijin Yan, Luyao Li, Shiwen Huang, Xiaofang Fu, Haiqun Ban, Xingrong Gong, Zheng Wang","doi":"10.1186/s13756-026-01699-7","DOIUrl":"https://doi.org/10.1186/s13756-026-01699-7","url":null,"abstract":"<p><strong>Background: </strong>Healthcare-associated infections (HAIs) are a global public health issue and a major threat to patient safety. This study aimed to estimate the prevalence of HAIs and antimicrobial use in a tertiary hospital in Shanghai, China.</p><p><strong>Methods: </strong>Point-prevalence surveys were conducted annually from 2012 to 2023. All inpatients present on the survey day were included. Data were analyzed to identify trends and patterns in the prevalence of HAIs and antimicrobial use.</p><p><strong>Results: </strong>The overall prevalence of HAIs was 3.97%, with significant variations observed across departments, age groups and patient populations, whether undergoing surgery or not. There was a significant upward trend in surgical wards from 3.97% in 2012 to 4.82% in 2023 (β = 0.135, P = 0.003). The prevalence of catheter-associated urinary tract infection showed a significant decreasing trend (β = - 0.032, P < 0.001). There was an increasing trend in the proportion of patients receiving single-agent antimicrobial use for prophylactic and therapeutic purposes. The most frequently isolated pathogens were Acinetobacter baumannii, Klebsiella pneumoniae, and Escherichia coli, which exhibited high rates of resistance to carbapenems.</p><p><strong>Conclusion: </strong>Despite some progress, challenges regarding HAIs and antimicrobial resistance persist in a tertiary care setting. The findings highlight the necessity for targeted infection control measures and robust antimicrobial stewardship programs to mitigate the burden of HAIs and optimize antimicrobial use.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145994260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-11DOI: 10.1186/s13756-025-01695-3
Yu Miao, Hong-Hui Ding, Cheng-Bo Wang, Yan-Fang Liang, Chuan Xu, Cong Shi, Wei-Jun Peng, Li Tan
Background: Carbapenem-resistant Acinetobacter baumannii (CRAB) has emerged as a pivotal pathogen contributing to healthcare-associated infections. Identifying environmental risk factors associated with CRAB contamination is critical.
Objectives: To assess the associations of ward microclimate and procedure duration with CRAB contamination risks.
Methods: High-touch environment and exposure surface, and air samples were repeatedly measured. A total of 2330 high-touch environment surfaces, 345 exposure surfaces, and 366 air samples were collected. The generalized linear mixed-effects model and additive interaction analysis were employed to examine the associations of ward microclimate and procedural factors with environmental CRAB contamination risks.
Results: We found that compared to procedures lasting ≤15min, those lasting >15min were related to higher risks of CRAB contamination (OR: 1.435, 95% CI: 1.052, 1.954). Compared to the standard environmental conditions (22.5-25.5 °C for temperature and 30-60% for humidity), lower temperature (<22.5 °C) and lower humidity (<30%) were associated with increased CRAB contamination risks (ORs:1.568 and 1.602). However, there was no significant association between high temperature (>25.5°C) or high humidity (>60%) and CRAB contamination risks. The combination of lower temperature or humidity with prolonged procedures showed synergistical interaction on increased risks of CRAB contamination. Additionally, CRAB was consistently detected in air across all sampling scenarios (static conditions, real-time nursing care procedures, and real-time sanitation), with the nursing care procedures group showing the highest detection rate (29.66% vs. 13.95% for static conditions and 8.33% for real-time sanitation).
Conclusions: Temperature and humidity below standard thresholds, combined with prolonged procedures were associated with an increased risk of environmental CRAB contamination in ICUs.
{"title":"Ward microclimate and procedural factors as predictors for CRAB environmental contamination in ICUs: a longitudinal monitoring study.","authors":"Yu Miao, Hong-Hui Ding, Cheng-Bo Wang, Yan-Fang Liang, Chuan Xu, Cong Shi, Wei-Jun Peng, Li Tan","doi":"10.1186/s13756-025-01695-3","DOIUrl":"https://doi.org/10.1186/s13756-025-01695-3","url":null,"abstract":"<p><strong>Background: </strong>Carbapenem-resistant Acinetobacter baumannii (CRAB) has emerged as a pivotal pathogen contributing to healthcare-associated infections. Identifying environmental risk factors associated with CRAB contamination is critical.</p><p><strong>Objectives: </strong>To assess the associations of ward microclimate and procedure duration with CRAB contamination risks.</p><p><strong>Methods: </strong>High-touch environment and exposure surface, and air samples were repeatedly measured. A total of 2330 high-touch environment surfaces, 345 exposure surfaces, and 366 air samples were collected. The generalized linear mixed-effects model and additive interaction analysis were employed to examine the associations of ward microclimate and procedural factors with environmental CRAB contamination risks.</p><p><strong>Results: </strong>We found that compared to procedures lasting ≤15min, those lasting >15min were related to higher risks of CRAB contamination (OR: 1.435, 95% CI: 1.052, 1.954). Compared to the standard environmental conditions (22.5-25.5 °C for temperature and 30-60% for humidity), lower temperature (<22.5 °C) and lower humidity (<30%) were associated with increased CRAB contamination risks (ORs:1.568 and 1.602). However, there was no significant association between high temperature (>25.5°C) or high humidity (>60%) and CRAB contamination risks. The combination of lower temperature or humidity with prolonged procedures showed synergistical interaction on increased risks of CRAB contamination. Additionally, CRAB was consistently detected in air across all sampling scenarios (static conditions, real-time nursing care procedures, and real-time sanitation), with the nursing care procedures group showing the highest detection rate (29.66% vs. 13.95% for static conditions and 8.33% for real-time sanitation).</p><p><strong>Conclusions: </strong>Temperature and humidity below standard thresholds, combined with prolonged procedures were associated with an increased risk of environmental CRAB contamination in ICUs.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145951143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-10DOI: 10.1186/s13756-025-01692-6
Elizabeth Torres-Lévano, Jeel Moya-Salazar, Jair Li, Michelle Lozada-Urbano, Jaime Rosales-Rimache
Introduction: Poor cleaning practices for healthcare workers' mobile phones can promote microbial contamination, posing a latent risk of infections for patients. Despite widespread mobile phone use in healthcare environments, evidence on the effectiveness of disinfection methods in low and middle-income countries remains limited.
Objective: To evaluate the disinfectant capacity of 70% isopropanol on the surface of healthcare workers' smartphones in a Peruvian hospital in 2023.
Methods: We designed a pre-post study to collect demographic, occupational, and phone usage information, along with microbiological culture analysis results before and after cleaning with 70% isopropanol.
Results: We evaluated 178 mobile phones from healthcare workers, 90.5% (95%CI: 85.1-94.0%) of which showed microbiological contamination. The most frequently isolated microorganism was Staphylococcus aureus (41.0%), followed by Enterococcus sp. (14.9%) and Staphylococcus epidermidis (9.9%). Antibiogram analysis revealed high resistance rates to ampicillin. No factors were associated with microbial contamination on phones. A significant reduction in microbiological contamination was observed (90.4% to 14.0%, p < 0.001) after cleaning with 70% isopropanol. Colony counts significantly decreased from 73.4 ± 31.8 CFU/cm2 to 3.9 ± 11.0 CFU/cm2 (p < 0.001).
Conclusion: The disinfectant capacity of 70% isopropanol on healthcare workers' smartphone surfaces is highly effective, resulting in an approximately fivefold reduction in contamination rates.
{"title":"High efficiency of 70% isopropanol in reducing microbial contamination on healthcare workers' smartphone surfaces: a pre-post study in Peru.","authors":"Elizabeth Torres-Lévano, Jeel Moya-Salazar, Jair Li, Michelle Lozada-Urbano, Jaime Rosales-Rimache","doi":"10.1186/s13756-025-01692-6","DOIUrl":"https://doi.org/10.1186/s13756-025-01692-6","url":null,"abstract":"<p><strong>Introduction: </strong>Poor cleaning practices for healthcare workers' mobile phones can promote microbial contamination, posing a latent risk of infections for patients. Despite widespread mobile phone use in healthcare environments, evidence on the effectiveness of disinfection methods in low and middle-income countries remains limited.</p><p><strong>Objective: </strong>To evaluate the disinfectant capacity of 70% isopropanol on the surface of healthcare workers' smartphones in a Peruvian hospital in 2023.</p><p><strong>Methods: </strong>We designed a pre-post study to collect demographic, occupational, and phone usage information, along with microbiological culture analysis results before and after cleaning with 70% isopropanol.</p><p><strong>Results: </strong>We evaluated 178 mobile phones from healthcare workers, 90.5% (95%CI: 85.1-94.0%) of which showed microbiological contamination. The most frequently isolated microorganism was Staphylococcus aureus (41.0%), followed by Enterococcus sp. (14.9%) and Staphylococcus epidermidis (9.9%). Antibiogram analysis revealed high resistance rates to ampicillin. No factors were associated with microbial contamination on phones. A significant reduction in microbiological contamination was observed (90.4% to 14.0%, p < 0.001) after cleaning with 70% isopropanol. Colony counts significantly decreased from 73.4 ± 31.8 CFU/cm<sup>2</sup> to 3.9 ± 11.0 CFU/cm<sup>2</sup> (p < 0.001).</p><p><strong>Conclusion: </strong>The disinfectant capacity of 70% isopropanol on healthcare workers' smartphone surfaces is highly effective, resulting in an approximately fivefold reduction in contamination rates.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":""},"PeriodicalIF":4.4,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145942043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Antimicrobial resistance refers to the ability of microorganisms to become resistant to antibiotics, fungicides, and other antimicrobial agents, which are essential for treating illnesses in humans, land and water-based animals, and plants. This issue is quickly emerging as a major danger to health, economic stability, and livelihoods. One notable driver of these resistant microorganisms is the misuse of antimicrobial medications.
Objective: To assess the practices and perspectives on antimicrobial drug misuse in Wolaita Zone, 2024.
Methods: This study employed a community-based cross-sectional mixed-methods design. The study data were collected from 423 community residents for the quantitative phase and 15 participants for the qualitative phase, data collection for the quantitative component was collected using structured interview-administered questionnaires, and the qualitative component involved in-depth interviews with purposively selected participants, guided by a structured interview. Quantitative data management involved the use of EpiData V4.6 and the Statistical Package for the Social Sciences for data entry and analysis, respectively. The qualitative data underwent thematic analysis utilizing OpenCode software, a qualitative data analysis tool.
Results: In this study, the quantitative data found that 67.1% of participants misused antimicrobial drugs. The factors significantly associated with the misuse of antimicrobial drugs included educational status [AOR: 1.91 (95% CI: 0.93-2.11)], drug cost [AOR: 3.22 (95% CI: 1.18-5.3)], knowledge regarding the use of antimicrobial drugs [AOR: 2.23 (95% CI: 1.66-4.01)], and adherence to stewardship guidelines [AOR: 3.37 (95% CI: 2.44-9.24)]. Additionally, the qualitative study identified four key themes from the data analysis namely, factors related to drug providers, patient-driven factors, sociocultural influences, and limitations in regulatory and policy frameworks.
Conclusion: The study reveals a troubling rate of antimicrobial drug misuse among the population. The finding underscores the urgent need to address the gaps and barriers that impede proper use of antimicrobial drugs. It is recommended that government and non-government health sectors, along with relevant stakeholders, implement educational initiatives and health campaigns to combat this problem.
{"title":"Practices and perspectives on antimicrobial drug misuse in Southern Ethiopia: a mixed-method study, 2024.","authors":"Getachew Nigussie Bolado, Eshetu Elfios Endrias, Bizuayehu Atinafu Ataro, Agumas Shibabaw Ayana, Habtamu Hurisa, Habtamu Bekele, Worku Mimani Minuta","doi":"10.1186/s13756-025-01688-2","DOIUrl":"10.1186/s13756-025-01688-2","url":null,"abstract":"<p><strong>Background: </strong>Antimicrobial resistance refers to the ability of microorganisms to become resistant to antibiotics, fungicides, and other antimicrobial agents, which are essential for treating illnesses in humans, land and water-based animals, and plants. This issue is quickly emerging as a major danger to health, economic stability, and livelihoods. One notable driver of these resistant microorganisms is the misuse of antimicrobial medications.</p><p><strong>Objective: </strong>To assess the practices and perspectives on antimicrobial drug misuse in Wolaita Zone, 2024.</p><p><strong>Methods: </strong>This study employed a community-based cross-sectional mixed-methods design. The study data were collected from 423 community residents for the quantitative phase and 15 participants for the qualitative phase, data collection for the quantitative component was collected using structured interview-administered questionnaires, and the qualitative component involved in-depth interviews with purposively selected participants, guided by a structured interview. Quantitative data management involved the use of EpiData V4.6 and the Statistical Package for the Social Sciences for data entry and analysis, respectively. The qualitative data underwent thematic analysis utilizing OpenCode software, a qualitative data analysis tool.</p><p><strong>Results: </strong>In this study, the quantitative data found that 67.1% of participants misused antimicrobial drugs. The factors significantly associated with the misuse of antimicrobial drugs included educational status [AOR: 1.91 (95% CI: 0.93-2.11)], drug cost [AOR: 3.22 (95% CI: 1.18-5.3)], knowledge regarding the use of antimicrobial drugs [AOR: 2.23 (95% CI: 1.66-4.01)], and adherence to stewardship guidelines [AOR: 3.37 (95% CI: 2.44-9.24)]. Additionally, the qualitative study identified four key themes from the data analysis namely, factors related to drug providers, patient-driven factors, sociocultural influences, and limitations in regulatory and policy frameworks.</p><p><strong>Conclusion: </strong>The study reveals a troubling rate of antimicrobial drug misuse among the population. The finding underscores the urgent need to address the gaps and barriers that impede proper use of antimicrobial drugs. It is recommended that government and non-government health sectors, along with relevant stakeholders, implement educational initiatives and health campaigns to combat this problem.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":"18"},"PeriodicalIF":4.4,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12865961/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145877518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-31DOI: 10.1186/s13756-025-01685-5
Dragana Drinković, David Holland, Lifeng Zhou, Susan Taylor, Hasan Bhally, Arlo Upton, Scott Beatson, Simon Briggs
Introduction: We conducted a prospective cohort study of patients with newly acquired extended-spectrum beta-lactamase-producing Enterobacterales (ESBLPE) intestinal colonisation (termed "ESBLPE colonisation") in two public hospitals between January 2013 and October 2016. We evaluated the duration of ESBLPE colonisation and the impact of selected factors on this duration.
Methods: Patient data and faeces samples were collected on enrolment and three monthly for 2 years. Standard laboratory methods were used for ESBLPE identification and susceptibility testing. Whole-genome sequencing of isolates was performed determining sequence type, plasmid replicons, antimicrobial resistance genes, virulence factor genes and phylogenetic relationships.
Results: The median duration of ESBLPE colonisation for the 102 patients was 544 days (range 77-730 days, interquartile range 220-730 days). After one year and at the end of follow up, 61% and 23.4% of patients respectively remained ESBLPE colonised. The same strain of ESBLPE, colonised 70.2% (33/47) patients colonised with Escherichia coli and 70.7% (29/42) patients colonised with Klebsiella pneumoniae. Prolonged ESBLPE colonisation was associated with age ≥ 75 years (HR 0.46, 95% CI 0.23-0.90), an increased intensity of hospitalisation (P = 0.0036), E. coli phylogroup B2 (P = 0.0142), E. coli harbouring blaCTX-M-15 (P < 0.0001), colonisation with more than one species of ESBLPE (P = 0.0023) and colonisation with more than one E. coli Sequence Type (P = 0.0042).
Conclusions: It is likely that combinations of multiple patient and bacterial factors influence the duration of ESBLPE colonisation. This prolonged duration of ESBLPE colonisation highlights the importance of infection control and public health measures to decrease the acquisition and spread of ESBLPE.
{"title":"Intestinal colonisation with extended-spectrum beta-lactamase-producing Enterobacterales and the impact of selected factors on intestinal colonisation duration: a prospective cohort study.","authors":"Dragana Drinković, David Holland, Lifeng Zhou, Susan Taylor, Hasan Bhally, Arlo Upton, Scott Beatson, Simon Briggs","doi":"10.1186/s13756-025-01685-5","DOIUrl":"10.1186/s13756-025-01685-5","url":null,"abstract":"<p><strong>Introduction: </strong>We conducted a prospective cohort study of patients with newly acquired extended-spectrum beta-lactamase-producing Enterobacterales (ESBLPE) intestinal colonisation (termed \"ESBLPE colonisation\") in two public hospitals between January 2013 and October 2016. We evaluated the duration of ESBLPE colonisation and the impact of selected factors on this duration.</p><p><strong>Methods: </strong>Patient data and faeces samples were collected on enrolment and three monthly for 2 years. Standard laboratory methods were used for ESBLPE identification and susceptibility testing. Whole-genome sequencing of isolates was performed determining sequence type, plasmid replicons, antimicrobial resistance genes, virulence factor genes and phylogenetic relationships.</p><p><strong>Results: </strong>The median duration of ESBLPE colonisation for the 102 patients was 544 days (range 77-730 days, interquartile range 220-730 days). After one year and at the end of follow up, 61% and 23.4% of patients respectively remained ESBLPE colonised. The same strain of ESBLPE, colonised 70.2% (33/47) patients colonised with Escherichia coli and 70.7% (29/42) patients colonised with Klebsiella pneumoniae. Prolonged ESBLPE colonisation was associated with age ≥ 75 years (HR 0.46, 95% CI 0.23-0.90), an increased intensity of hospitalisation (P = 0.0036), E. coli phylogroup B2 (P = 0.0142), E. coli harbouring bla<sub>CTX-M-15</sub> (P < 0.0001), colonisation with more than one species of ESBLPE (P = 0.0023) and colonisation with more than one E. coli Sequence Type (P = 0.0042).</p><p><strong>Conclusions: </strong>It is likely that combinations of multiple patient and bacterial factors influence the duration of ESBLPE colonisation. This prolonged duration of ESBLPE colonisation highlights the importance of infection control and public health measures to decrease the acquisition and spread of ESBLPE.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":" ","pages":"17"},"PeriodicalIF":4.4,"publicationDate":"2025-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12866355/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145861772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-29DOI: 10.1186/s13756-025-01664-w
Cynthia P Haanappel, Juliëtte A Severin, Karin Ellen Veldkamp, Jean-Luc Murk, Anne J G Mutsaers van Oudheusden, Emile Schippers, Matthew B B McCall, Carla van Tienen, Jeroen J A van Kampen, Marion P G Koopmans, Rob Klont, Bastiaan E Kellerhuis, Kevin Jenniskens, Johannes B Reitsma, Margreet C Vos, Anne F Voor In 't Holt
Background: The COVID-19 pandemic underscored the vital role of infection prevention and control (IPC) policies in hospitals to protect patients and healthcare workers. National guidance documents have traditionally provided a framework for local IPC policy development. This study aimed to examine the translation of the Dutch national COVID-19 IPC guidance documents into local Dutch hospital policies, specifically focusing on discontinuing isolation measures for COVID-19 patients.
Methods: This multicentre retrospective study investigated the IPC policies of seven Dutch hospitals, of which three academic hospitals and four non-academic hospitals. IPC practitioners collected data from hospitals' (archived) IPC policy guidelines implemented between March 2020 and December 2021. A composite index based on the criteria for discontinuation of isolation measures for COVID-19 patients was created to capture variation in policy translation within and across hospitals over time, relative to the national guidance document. Using this index, a descriptive analysis was performed to assess the extent to which hospitals adopted the national guidance for discontinuing isolation measures for specific patient groups.
Results: The national COVID-19 IPC guidance document for discontinuing isolation measures established targeted criteria for six patient groups, and included criteria based upon days since symptom onset, symptoms, symptom-free period, and RT-PCR results. Hospitals distinguished 16 patient groups. While the national guidance was updated regularly, the criteria for discontinuing isolation measures changed once; the frequency of local hospital updates ranged from four to 12 times. Policy variation was observed both within and across local hospital policies over time. Local hospital policies tended to be less strict for patients on ventilation and/or with a tracheostomy (78% of the time), while for other patient groups, they were more often stricter.
Conclusions: Compared to the national guidance, local hospital guidelines showed more variety in the number of patient groups described as well as more policy changes throughout the first two years of the pandemic. Furthermore, variation was observed within and between hospitals over time. These variations show the complexity of striving for a uniform and unambiguous policy on a national level, and indicate the need for awareness of the presence of variation in settings regarding patient groups and infrastructure.
{"title":"Local translation of national guidance on discontinuing COVID-19 isolation into hospital policies results in considerable differences.","authors":"Cynthia P Haanappel, Juliëtte A Severin, Karin Ellen Veldkamp, Jean-Luc Murk, Anne J G Mutsaers van Oudheusden, Emile Schippers, Matthew B B McCall, Carla van Tienen, Jeroen J A van Kampen, Marion P G Koopmans, Rob Klont, Bastiaan E Kellerhuis, Kevin Jenniskens, Johannes B Reitsma, Margreet C Vos, Anne F Voor In 't Holt","doi":"10.1186/s13756-025-01664-w","DOIUrl":"10.1186/s13756-025-01664-w","url":null,"abstract":"<p><strong>Background: </strong>The COVID-19 pandemic underscored the vital role of infection prevention and control (IPC) policies in hospitals to protect patients and healthcare workers. National guidance documents have traditionally provided a framework for local IPC policy development. This study aimed to examine the translation of the Dutch national COVID-19 IPC guidance documents into local Dutch hospital policies, specifically focusing on discontinuing isolation measures for COVID-19 patients.</p><p><strong>Methods: </strong>This multicentre retrospective study investigated the IPC policies of seven Dutch hospitals, of which three academic hospitals and four non-academic hospitals. IPC practitioners collected data from hospitals' (archived) IPC policy guidelines implemented between March 2020 and December 2021. A composite index based on the criteria for discontinuation of isolation measures for COVID-19 patients was created to capture variation in policy translation within and across hospitals over time, relative to the national guidance document. Using this index, a descriptive analysis was performed to assess the extent to which hospitals adopted the national guidance for discontinuing isolation measures for specific patient groups.</p><p><strong>Results: </strong>The national COVID-19 IPC guidance document for discontinuing isolation measures established targeted criteria for six patient groups, and included criteria based upon days since symptom onset, symptoms, symptom-free period, and RT-PCR results. Hospitals distinguished 16 patient groups. While the national guidance was updated regularly, the criteria for discontinuing isolation measures changed once; the frequency of local hospital updates ranged from four to 12 times. Policy variation was observed both within and across local hospital policies over time. Local hospital policies tended to be less strict for patients on ventilation and/or with a tracheostomy (78% of the time), while for other patient groups, they were more often stricter.</p><p><strong>Conclusions: </strong>Compared to the national guidance, local hospital guidelines showed more variety in the number of patient groups described as well as more policy changes throughout the first two years of the pandemic. Furthermore, variation was observed within and between hospitals over time. These variations show the complexity of striving for a uniform and unambiguous policy on a national level, and indicate the need for awareness of the presence of variation in settings regarding patient groups and infrastructure.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":"14 1","pages":"153"},"PeriodicalIF":4.4,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12751809/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145853112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-28DOI: 10.1186/s13756-025-01668-6
Maxime Danjean, Guilhem Royer, Christophe Rodriguez, Paul-Louis Woerther, Jean-Winoc Decousser
Whole-genome sequencing has become a key tool for identifying bacterial cross-transmission in healthcare settings. Among the methods used, core-genome Multi-Locus Sequence Typing (cgMLST) is considered as the reference method owing to its standardization. However, its limitations are often overlooked, particularly for taxonomically complex species such as Enterobacter cloacae. We report a case of false-positive genomic linkage between two E. cloacae isolates recovered from patients hospitalized in different units, four months apart, with no epidemiological overlap. Routine retrospective genomic surveillance using a local cgMLST scheme flagged these isolates as genetically related. However, further analyses based on core-genome Single-Nucleotide Polymorphism (SNPs) calling and molecular phylogeny, including public genomes, revealed that the two isolates belonged to distinct clusters and differed by 99 SNPs. This case illustrates the risk of overinterpreting cgMLST results when applied to species with high genomic heterogeneity and insufficiently robust schemes. These findings highlight the importance of interpreting genomic data within its epidemiological context, and in the case of inconsistency confirming potential links through high-resolution SNP analysis, and developing standardized, species-specific cgMLST schemes.
{"title":"Genomic pitfalls in hospital surveillance: unexpected Enterobacter cloacae clustering without epidemiological link highlights the need for cautious core genome MLST analysis interpretation.","authors":"Maxime Danjean, Guilhem Royer, Christophe Rodriguez, Paul-Louis Woerther, Jean-Winoc Decousser","doi":"10.1186/s13756-025-01668-6","DOIUrl":"10.1186/s13756-025-01668-6","url":null,"abstract":"<p><p>Whole-genome sequencing has become a key tool for identifying bacterial cross-transmission in healthcare settings. Among the methods used, core-genome Multi-Locus Sequence Typing (cgMLST) is considered as the reference method owing to its standardization. However, its limitations are often overlooked, particularly for taxonomically complex species such as Enterobacter cloacae. We report a case of false-positive genomic linkage between two E. cloacae isolates recovered from patients hospitalized in different units, four months apart, with no epidemiological overlap. Routine retrospective genomic surveillance using a local cgMLST scheme flagged these isolates as genetically related. However, further analyses based on core-genome Single-Nucleotide Polymorphism (SNPs) calling and molecular phylogeny, including public genomes, revealed that the two isolates belonged to distinct clusters and differed by 99 SNPs. This case illustrates the risk of overinterpreting cgMLST results when applied to species with high genomic heterogeneity and insufficiently robust schemes. These findings highlight the importance of interpreting genomic data within its epidemiological context, and in the case of inconsistency confirming potential links through high-resolution SNP analysis, and developing standardized, species-specific cgMLST schemes.</p>","PeriodicalId":7950,"journal":{"name":"Antimicrobial Resistance and Infection Control","volume":"14 1","pages":"152"},"PeriodicalIF":4.4,"publicationDate":"2025-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12746620/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145848641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}