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Using whole genome sequencing to characterize Clostridioides difficile isolates at a tertiary center in Melbourne, Australia 利用全基因组测序确定澳大利亚墨尔本一家三级中心艰难梭菌分离物的特征
Pub Date : 2024-01-12 DOI: 10.1017/ash.2023.529
Alice Liu, Eddie Chan, Victoria Madigan, Vivian Leung, Lucille Dosvaldo, N. Sherry, Benjamin Howden, Katherine Bond, Caroline Marshall
Abstract Objective: Clostridioides difficile infection (CDI) is the commonest cause of healthcare-associated diarrhea and undergoes standardized surveillance and mandatory reporting in most Australian states and territories. Historically attributed to nosocomial spread, local and international whole genome sequencing (WGS) data suggest varied sources of acquisition. This study describes C. difficile genotypes isolated at a tertiary center in Melbourne, Australia, their likely source of acquisition, and common risk factors. Design: Retrospective observational study. Setting: The Royal Melbourne Hospital (RMH), a 570-bed tertiary center in Victoria, Australia. Methods: Short-read whole genome sequencing was performed on 75 out of 137 C. difficile isolates obtained from 1/5/2021 to 28/2/2022 and compared to previous data from 8/11/2015 to 1/11/2016. Existing data from infection control surveillance and electronic medical records were used for epidemiological and risk factor analysis. Results: Eighty-five (62.1%) of the 137 cases were defined as healthcare-associated from epidemiological data. On genome sequencing, 33 different multi-locus sequence type (MLST) subtypes were identified, with changes in population structure compared to the 2015–16 period. Risk factors for CDI were present in 130 (94.9%) cases, including 108 (78.8%) on antibiotics, 86 (62.8%) on acid suppression therapy, and 25 (18.2) on chemotherapy. Conclusion: In both study periods, most C. difficile isolates were not closely related, suggesting varied sources of acquisition and that spread of C. difficile within the hospital was unlikely. Current infection control precautions may therefore warrant review. Underlying risk factors for CDI were common and may contribute to the proportion of healthcare-associated infections in the absence of proven hospital transmission.
摘要 目的:艰难梭菌感染(CDI)是最常见的医源性腹泻病因,澳大利亚大多数州和地区都对其进行标准化监测和强制报告。艰难梭菌感染历来被认为是由病原微生物传播引起的,但本地和国际全基因组测序(WGS)数据表明其感染来源多种多样。本研究描述了在澳大利亚墨尔本一家三级中心分离出的艰难梭菌基因型、其可能的感染来源以及常见的风险因素。设计:回顾性观察研究。地点:墨尔本皇家医院(RM墨尔本皇家医院(RMH),澳大利亚维多利亚州一家拥有 570 张病床的三级医疗中心。方法:短读全基因组测序对 2021 年 5 月 1 日至 2022 年 2 月 28 日期间获得的 137 例艰难梭菌分离株中的 75 例进行短读全基因组测序,并与 2015 年 11 月 8 日至 2016 年 11 月 1 日期间的数据进行比较。来自感染控制监测和电子病历的现有数据被用于流行病学和风险因素分析。结果根据流行病学数据,137 例病例中有 85 例(62.1%)被定义为医疗相关病例。通过基因组测序,确定了33种不同的多焦点序列类型(MLST)亚型,与2015-16年期间相比,人群结构发生了变化。130例(94.9%)病例存在CDI风险因素,其中108例(78.8%)正在使用抗生素,86例(62.8%)正在接受抑酸治疗,25例(18.2%)正在接受化疗。结论在两个研究期间,大多数艰难梭菌分离株之间的关系并不密切,这表明艰难梭菌的感染来源多种多样,在医院内传播的可能性不大。因此,需要对当前的感染控制预防措施进行审查。艰难梭菌感染的潜在风险因素很常见,在没有证实医院传播的情况下,这些因素可能会导致医护人员相关感染的比例增加。
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引用次数: 0
Bring it on again: antimicrobial stewardship in transplant infectious diseases: updates and new challenges 再接再厉:移植传染病中的抗菌药物管理:最新进展与新挑战
Pub Date : 2024-01-11 DOI: 10.1017/ash.2023.517
H. Tsai, Rachel Bartash, Daniel Burack, Neeraja Swaminathan, M. So
Abstract Advancement in solid organ transplantation and hematopoietic stem cell transplant continues to improve the health outcomes of patients and widens the number of eligible patients who can benefit from the medical progress. Preserving the effectiveness of antimicrobials remains crucial, as otherwise transplant surgeries would be unsafe due to surgical site infections, and the risk of sepsis with neutropenia would preclude stem cell transplant. In this review, we provide updates on three previously discussed stewardship challenges: febrile neutropenia, Clostridioides difficile infection, and asymptomatic bacteriuria. We also offer insight into four new stewardship challenges: the applicability of the “shorter is better” paradigm shift to antimicrobial duration; antibiotic allergy delabeling and desensitization; colonization with multidrug-resistant gram-negative organisms; and management of cytomegalovirus infections. Specifically, data are accumulating for “shorter is better” and antibiotic allergy delabeling in transplant patients, following successes in the general population. Unique to transplant patients are the impact of multidrug-resistant organism colonization on clinical decision-making of antibiotic prophylaxis in transplant procedure and the need for antiviral stewardship in cytomegalovirus. We highlighted the expansion of antimicrobial stewardship interventions as potential solutions for these challenges, as well as gaps in knowledge and opportunities for further research.
摘要 实体器官移植和造血干细胞移植的进步不断改善着患者的健康状况,并使更多符合条件的患者从医学进步中受益。保持抗菌药物的有效性仍然至关重要,否则移植手术将因手术部位感染而变得不安全,而中性粒细胞减少症引发败血症的风险将排除干细胞移植。在这篇综述中,我们对之前讨论过的三个监管挑战进行了更新:发热性中性粒细胞减少症、艰难梭菌感染和无症状菌尿。我们还对四项新的管理挑战提出了见解:"时间越短越好 "的范式转变对抗菌药物使用时间的适用性;抗生素过敏标签的去除和脱敏;耐多药革兰氏阴性菌的定植;以及巨细胞病毒感染的管理。特别是,继在普通人群中取得成功后,有关移植患者 "用药时间越短越好 "和抗生素过敏脱敏的数据也在不断积累。多药耐药菌定植对移植手术中抗生素预防的临床决策的影响以及巨细胞病毒抗病毒管理的必要性是移植患者所独有的。我们强调了抗菌药物管理干预措施的扩展,以此作为应对这些挑战的潜在解决方案,同时也强调了知识差距和进一步研究的机会。
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引用次数: 0
Professor Mahmood Bhutta on disrupting unhealthy supply chains and promoting environmental sustainability in health care 马哈茂德-布塔(Mahmood Bhutta)教授谈打破不健康的供应链和促进医疗保健的环境可持续性
Pub Date : 2024-01-11 DOI: 10.1017/ash.2023.533
Mahmood F. Bhutta
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引用次数: 0
Influenza outbreak management tabletop exercise for congregate living settings 针对集体生活场所的流感爆发管理桌面演练
Pub Date : 2024-01-11 DOI: 10.1017/ash.2023.528
Christina K. Chan, Jerome A. Leis, Heather Candon, Neethu R. Thomas, Jaclyn O’Brien, James Callahan, Brigitte Pascual, Marianna Ofner, Fatima Fazalullasha, Adrienne K. Chan, Jeff E. Powis, Charlie Tan
Abstract We conducted a tabletop exercise on influenza outbreak preparedness that engaged a large group of congregate living settings (CLS), with improvements in self-reported knowledge and readiness. This proactive approach to responding to communicable disease threats has potential to build infection prevention and control capacity beyond COVID-19 in the CLS sector.
摘要 我们开展了一次关于流感爆发准备工作的桌面演习,让一大批集中居住场所(CLS)参与其中,并提高了自我报告的知识水平和准备程度。这种积极应对传染病威胁的方法有可能在 CLS 部门建立起 COVID-19 以外的感染预防和控制能力。
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引用次数: 0
Intermittent hemodialysis: a review of the top antimicrobial stewardship practices to be employed 间歇性血液透析:应采用的顶级抗菌管理方法回顾
Pub Date : 2024-01-11 DOI: 10.1017/ash.2023.525
Nour Shamas, F. Khamis, K. Eljaaly, Zaher Al Salmi, M. Al Bahrani
Abstract The vulnerability of patients on hemodialysis (HD) to infections is evident by their increased susceptibility to infections in general and to resistant organisms in particular. Unnecessary, inappropriate, or suboptimal antimicrobial prescribing is common in dialysis units. This underscores the need for dedicated antimicrobial stewardship (AMS) interventions that can be implemented both in the inpatient and outpatient settings. In this review, we provide a comprehensive approach for clinicians with the most updated coordinated AMS principles in HD setting in six areas: prevention, diagnosis, treatment, education and empowerment, monitoring, and research.
摘要 血液透析(HD)患者容易受到感染,这一点从他们对感染,尤其是耐药菌的易感性增加就可看出。在透析室中,不必要、不适当或未达到最佳效果的抗菌药物处方很常见。这凸显了在住院和门诊环境中实施专门的抗菌药物管理(AMS)干预措施的必要性。在这篇综述中,我们从预防、诊断、治疗、教育和授权、监测和研究六个方面为临床医生提供了一种全面的方法,并介绍了血液透析环境中最新的抗菌药物管理原则。
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引用次数: 0
Oral amoxicillin challenges for low-risk penicillin-allergic patients at a large Veterans Affairs facility: a retrospective feasibility analysis 一家大型退伍军人事务机构的低风险青霉素过敏患者口服阿莫西林的挑战:回顾性可行性分析
Pub Date : 2024-01-11 DOI: 10.1017/ash.2023.532
Jessica M. Guastadisegni, Misozi K. Kolala, Jazmyn M. Criss, M. Kouma, D. Storey, R. Arasaratnam
Abstract We retrospectively reviewed the records of 136 veterans with a penicillin allergy label during a quality improvement initiative. We identified 82 inpatients eligible for removal of penicillin allergy by oral amoxicillin challenge, including 40 out of 82 (48%) still eligible after accounting for other limiting factors.
摘要 我们在一次质量改进活动中回顾性审查了 136 名带有青霉素过敏标签的退伍军人的病历。我们发现有 82 名住院病人符合通过口服阿莫西林挑战去除青霉素过敏的条件,其中有 40 人(48%)在考虑了其他限制因素后仍符合条件。
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引用次数: 0
Efficacy of noncarbapenem therapy for the treatment of ceftriaxone-resistant Enterobacterales outside the urinary tract 治疗尿路外耐药头孢曲松肠杆菌的非碳青霉烯类疗法的疗效
Pub Date : 2024-01-09 DOI: 10.1017/ash.2023.137
Ethan Rausch, K. Alby, William Wilson
Abstract Objective: To determine the safety of noncarbapenem versus carbapenem antibiotics for treatment of adults with documented infection caused by ceftriaxone-resistant infections outside the urinary tract. Design: Retrospective cohort of adult patients with a documented infection caused by an extended-spectrum β-lactamase (ESBL)–producing organism isolated between January 2018 and October 2021. Setting: An academic tertiary-care center. Patients: Adult patients with a documented infection caused by an ESBL-producing organism outside the urinary tract. Methods: The primary outcome was a composite of treatment failure defined as 30-day mortality, 30-day readmission, microbiological recurrence, and/or clinical worsening requiring antibiotic change. Secondary outcomes included differentiation of primary composite components and postantibiotic Clostridioides difficile infection (CDI). Results: This study included 130 patients. The primary source of infections were bloodstream (67.7%) and caused by Escherichia coli (81.5%). Overall, 101 patients received carbapenem therapy and 29 received noncarbapenem therapy (NCT). NCT was comprised of mainly fluoroquinolones (18 of 29) followed by cefepime (7 of 29). Patients receiving NCT had shorter hospital stays (median, 7 days vs 9 days) and were more often discharged on antibiotics (79.3% vs 50.5%). We did not detect a significant difference in the primary composite outcome of treatment failure for carbapenem (23.8%) versus noncarbapenem treatment (24.2%; P = .967). Secondary outcomes included a numerically higher 30-day mortality rate in the noncarbapenem group compared to the carbapenem group: 4 (13.8%) of 29 versus 4 (3.9%) of 101. We did not detect a difference in rates of CDI. Conclusion: Noncarbapenem therapy may play a role for certain patients with infections caused by ESBL-producing organisms.
摘要 目的:确定非碳青霉烯类抗生素与碳青霉烯类抗生素在治疗由头孢曲松耐药的泌尿道外感染引起的成人感染中的安全性。设计:对2018年1月至2021年10月期间分离到的有记录的由产扩展谱β-内酰胺酶(ESBL)生物引起感染的成人患者进行回顾性队列研究。地点一家学术性三级医疗中心。患者:有记录的由泌尿道外产 ESBL 菌引起感染的成人患者。治疗方法主要结果是治疗失败的复合结果,定义为 30 天死亡率、30 天再入院率、微生物复发和/或需要更换抗生素的临床恶化。次要结果包括主要复合成分的区分和抗生素治疗后艰难梭菌感染(CDI)。研究结果本研究共纳入 130 名患者。感染的主要来源是血流(67.7%)和大肠埃希菌(81.5%)。总体而言,101 名患者接受了碳青霉烯类疗法,29 名患者接受了非碳青霉烯类疗法 (NCT)。NCT 主要包括氟喹诺酮类药物(29 例中有 18 例),其次是头孢吡肟类(29 例中有 7 例)。接受 NCT 治疗的患者住院时间较短(中位数为 7 天 vs 9 天),出院时更多使用抗生素(79.3% vs 50.5%)。我们没有发现碳青霉烯类疗法(23.8%)与非碳青霉烯类疗法(24.2%;P = .967)治疗失败这一主要综合结果有明显差异。次要结果包括:与碳青霉烯类药物组相比,非碳青霉烯类药物组的 30 天死亡率更高:29例中有4例(13.8%)死亡,101例中有4例(3.9%)死亡。我们没有发现 CDI 发病率的差异。结论非碳青霉烯类疗法可能对某些由产ESBL菌引起感染的患者有一定作用。
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引用次数: 0
The use of UV-C radiation for terminal disinfection of pathogenic Gram-negative rods: a pilot study 利用紫外线-C 辐射对致病性革兰氏阴性杆菌进行终端消毒:一项试点研究
Pub Date : 2023-12-21 DOI: 10.1017/ash.2023.514
J. Tholany, Hiroyuki Suzuki, Amy R. Frank, Steven H. Bryant, Cassie Cunningham Goedken, Daniel Suh, Michael S. Stevens, Stacey M. Hockett Sherlock, Eli N. Perencevich
Abstract In this controlled study, we found that exposure to ultraviolet-C (UV-C) radiation was able to arrest the growth of selected pathogenic enteric and nonfermenting Gram-negative rods. Further studies are needed to confirm the clinical efficacy and determine optimal implementation strategies for utilizing UV-C terminal disinfection.
摘要 在这项对照研究中,我们发现紫外线-C(UV-C)辐射能够抑制某些致病性肠道杆菌和非发酵革兰氏阴性杆菌的生长。还需要进一步的研究来证实其临床疗效,并确定利用紫外线-C 进行终端消毒的最佳实施策略。
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引用次数: 0
A novel approach to correcting attribution of Clostridioides difficile in a healthcare setting 纠正医疗机构中艰难梭菌归属的新方法
Pub Date : 2023-12-20 DOI: 10.1017/ash.2023.516
Hunter Doyle, Abby L. Valek, Theresa Murillo, Ashley M. Ayres, Julie Slaughter, Madeline L. Berg, Graham M. Snyder
Abstract Objective: To describe a novel attribution metric estimating the causal source location of healthcare-associated Clostridioides difficile and compare it with the current US National Healthcare Safety Network (NHSN) surveillance reporting standard. Design: Quality improvement study. Setting: Two acute care facilities. Methods: A novel attribution metric assigned days of attribution to locations where patients were located for 14 days before and the day of their C. difficile diagnosis. We correlated the NHSN-assigned unit attribution with the novel attribution measure and compared the proportion of attribution assigned to inpatient units. Results: During a 30-month period, there were 727 NHSN C. difficile healthcare-associated infections (HAIs) and 409 non-HAIs; the novel metric attributed 17,034 days. The correlation coefficients for NHSN and novel attributions among non-ICU units were 0.79 (95% CI, 0.76–0.82) and 0.74 (95% CI, 0.70–0.78) and among ICU units were 0.70 (95% CI, 0.63–0.76) and 0.69 (95% CI, 0.60–0.77) at facilities A and B, respectively. The distribution of difference in percent attribution showed higher inpatient unit attribution using NHSN measure than the novel attribution metric: 38% of ICU units and 15% of non-ICU units in facility A, and 20% of ICU units and 25% of non-ICU units in facility B had a median difference >0; no inpatient units showed a greater attribution using the novel attribution metric. Conclusion: The novel attribution metric shifts attribution from inpatient units to other settings and correlates modestly with NHSN methodology of attribution. If validated, the attribution metric may more accurately target C. difficile reduction efforts.
摘要 目的:描述一种新的归因指标,该指标可估算出与医疗相关的艰难梭菌的因果源位置,并将其与当前的美国国家医疗安全网络(NHSN)监测报告标准进行比较。设计:质量改进研究。地点:两家急症护理机构两家急症护理机构。方法一种新的归因衡量标准将归因天数分配到患者确诊艰难梭菌病前 14 天和确诊当天所在的地点。我们将 NHSN 分配的单位归因与新型归因指标进行了关联,并比较了分配给住院单位的归因比例。结果:在 30 个月的时间里,共发生了 727 例 NHSN 艰难梭菌医护相关感染 (HAI) 和 409 例非 HAI;新指标的归因天数为 17,034 天。在设施 A 和 B 中,非重症监护病房的 NHSN 和新型归因相关系数分别为 0.79(95% CI,0.76-0.82)和 0.74(95% CI,0.70-0.78),重症监护病房的相关系数分别为 0.70(95% CI,0.63-0.76)和 0.69(95% CI,0.60-0.77)。归因百分比差异的分布显示,使用 NHSN 指标的住院病房归因高于使用新归因指标的住院病房:设施 A 中 38% 的 ICU 病房和 15% 的非 ICU 病房、设施 B 中 20% 的 ICU 病房和 25% 的非 ICU 病房的中位数差异大于 0;使用新归因指标的住院病房归因均未超过 0。结论:新型归因指标将归因从住院病房转移到了其他环境,并与 NHSN 的归因方法略有关联。如果得到验证,该归因指标可以更准确地确定减少艰难梭菌感染的目标。
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引用次数: 0
A cluster investigation of Candida auris among hospitalized incarcerated patients 住院监禁患者中念珠菌的群集调查
Pub Date : 2023-12-19 DOI: 10.1017/ash.2023.520
April N. McDougal, Mary Ann DeMaet, Bobbiejean Garcia, Teresa York, Thomas Iverson, Olugbenga Ojo, Janak Patel
Abstract Objective: Investigate and mitigate a cluster of Candida auris cases among incarcerated patients in a maximum-security prison hospital utilizing contact tracing, screening, whole genome sequencing, and environmental sampling and decontamination. Design: Outbreak investigation. Setting: Inpatient prison hospital affiliated with an academic tertiary referral center. Patients: Inmates of the Texas Department of Criminal Justice. Methods: Epidemiologic and environmental investigations were conducted including contact tracing, point prevalence surveys, and environmental sampling. Whole genome sequencing was performed on positive patient isolates. Results: Following a clinical case of C. auris fungemia, 344 patients underwent C. auris surveillance screening. Eight (2.3%) patients were identified with C. auris colonization. All patients were male. Our index patient was the only clinical case and death. Whole genome sequencing was performed on the nine patient isolates. All isolates were clade III (Africa) and clustered together with the largest SNP difference being 21. Environmental cultures from 7 of 61 rooms (11.5%) were positive following terminal disinfection with bleach. Sites nearest to the patient were most often positive including the hospital bed rails and bedside table. The transmission cluster was successfully mitigated within 60 days of identification. Conclusions: Implementation of an aggressive surveillance and decontamination program resulted in mitigation of a C. auris transmission cluster among our incarcerated patients. This investigation provides valuable insight into C. auris transmission in the incarcerated population, which is not considered a classic high-risk population as well as the challenges faced to stop transmission in a facility that requires the use of shared patient environments.
摘要 目的:利用接触追踪、筛查、全基因组测序以及环境采样和净化等方法,调查并缓解一所最高戒备监狱医院中被监禁病人中的念珠菌病例群。设计:疫情调查。地点:一家学术性三级转诊中心的附属监狱医院。患者:德克萨斯州刑事司法部的囚犯。调查方法进行流行病学和环境调查,包括接触者追踪、点流行率调查和环境采样。对阳性患者分离物进行了全基因组测序。结果:在发现一例弓形体真菌血症临床病例后,344 名患者接受了弓形体真菌监测筛查。8名患者(2.3%)被确定为法氏囊菌定植。所有患者均为男性。我们的指标病人是唯一的临床病例和死亡病例。对九名患者的分离株进行了全基因组测序。所有分离株均为支系 III(非洲),并聚集在一起,最大的 SNP 差异为 21。用漂白剂进行终端消毒后,61 个房间中有 7 个(11.5%)的环境培养物呈阳性。离病人最近的地方最常出现阳性,包括医院的床栏和床头柜。该传播集群在发现后的 60 天内被成功控制。结论:实施积极的监控和净化计划后,我们的监禁病人中的球孢子菌传播集群得以缓解。这项调查为我们深入了解阿氏杆菌在被监禁人群中的传播提供了宝贵的资料,因为被监禁人群并不被认为是典型的高风险人群,同时也为我们深入了解在需要使用共用患者环境的设施中阻止传播所面临的挑战提供了宝贵的资料。
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引用次数: 0
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Antimicrobial Stewardship & Healthcare Epidemiology
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