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Exome/Genome Sequencing in Undiagnosed Syndromes. 未确诊综合征的外显子组/基因组测序。
IF 15.1 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-042921-110721
Jennifer A Sullivan, Kelly Schoch, Rebecca C Spillmann, Vandana Shashi

Exome sequencing (ES) and genome sequencing (GS) have radically transformed the diagnostic approach to undiagnosed rare/ultrarare Mendelian diseases. Next-generation sequencing (NGS), the technology integral for ES, GS, and most large (100+) gene panels, has enabled previously unimaginable diagnoses, changes in medical management, new treatments, and accurate reproductive risk assessments for patients, as well as new disease gene discoveries. Yet, challenges remain, as most individuals remain undiagnosed with current NGS. Improved NGS technology has resulted in long-read sequencing, which may resolve diagnoses in some patients who do not obtain a diagnosis with current short-read ES and GS, but its effectiveness is unclear, and it is expensive. Other challenges that persist include the resolution of variants of uncertain significance, the urgent need for patients with ultrarare disorders to have access to therapeutics, the need for equity in patient access to NGS-based testing, and the study of ethical concerns. However, the outlook for undiagnosed disease resolution is bright, due to continual advancements in the field.

外显子组测序(ES)和基因组测序(GS)从根本上改变了诊断未确诊罕见/特发性孟德尔疾病的方法。下一代测序(NGS)技术是 ES、GS 和大多数大型(100 个以上)基因面板不可或缺的技术,它使以前无法想象的诊断、医疗管理的改变、新的治疗方法、对患者进行准确的生殖风险评估以及新疾病基因的发现成为可能。然而,挑战依然存在,因为目前的 NGS 仍无法诊断出大多数患者。NGS 技术的改进带来了长读程测序技术,它可以为一些无法通过目前的短读程 ES 和 GS 获得诊断的患者解决诊断问题,但其效果尚不明确,而且价格昂贵。其他持续存在的挑战包括:解决意义不确定的变异、超罕见疾病患者获得治疗的迫切需要、患者公平获得基于 NGS 检测的需要,以及对伦理问题的研究。然而,由于该领域的不断进步,解决未诊断疾病的前景是光明的。
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引用次数: 0
Biological Phenotyping in Sepsis and Acute Respiratory Distress Syndrome. 脓毒症和急性呼吸窘迫综合征的生物学表型。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 Epub Date: 2022-12-05 DOI: 10.1146/annurev-med-043021-014005
Pratik Sinha, Nuala J Meyer, Carolyn S Calfee

Heterogeneity in sepsis and acute respiratory distress syndrome (ARDS) is increasingly being recognized as one of the principal barriers to finding efficacious targeted therapies. The advent of multiple high-throughput biological data ("omics"), coupled with the widespread access to increased computational power, has led to the emergence of phenotyping in critical care. Phenotyping aims to use a multitude of data to identify homogenous subgroups within an otherwise heterogenous population. Increasingly, phenotyping schemas are being applied to sepsis and ARDS to increase understanding of these clinical conditions and identify potential therapies. Here we present a selective review of the biological phenotyping schemas applied to sepsis and ARDS. Further, we outline some of the challenges involved in translating these conceptual findings to bedside clinical decision-making tools.

败血症和急性呼吸窘迫综合征(ARDS)的异质性越来越被认为是寻找有效靶向治疗的主要障碍之一。多重高通量生物数据(“组学”)的出现,加上计算能力的提高,导致了重症监护中表型的出现。表型分析旨在使用大量数据来识别异质群体中的同质亚群。表型模式越来越多地被应用于败血症和ARDS,以增加对这些临床条件的了解并确定潜在的治疗方法。在此,我们对应用于败血症和ARDS的生物学表型模式进行了选择性综述。此外,我们概述了将这些概念性发现转化为床边临床决策工具所涉及的一些挑战。
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引用次数: 0
Clonal Hematopoiesis and Its Impact on Human Health. 克隆造血及其对人类健康的影响。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-042921-112347
Herra Ahmad, Nikolaus Jahn, Siddhartha Jaiswal

Aging is associated with increased mutational burden in every tissue studied. Occasionally, fitness-increasing mutations will arise, leading to stem cell clonal expansion. This process occurs in several tissues but has been best studied in blood. Clonal hematopoiesis is associated with an increased risk of blood cancers, such as acute myeloid leukemia, which result if additional cooperating mutations occur. Surprisingly, it is also associated with an increased risk of nonmalignant diseases, such as atherosclerotic cardiovascular disease. This may be due to enhanced inflammation in mutated innate immune cells, which could be targeted clinically with anti-inflammatory drugs. Recent studies have uncovered other factors that predict poor outcomes in patients with clonal hematopoiesis, such as size of the mutant clone, mutated driver genes, and epigenetic aging. Though clonality is inevitable and largely a function of time, recent work has shown that inherited genetic variation can also influence this process. Clonal hematopoiesis provides a paradigm for understanding how age-related changes in tissue stem cell composition and function influence human health.

在研究的每个组织中,衰老都与突变负担增加有关。偶尔,适应度增加突变会出现,导致干细胞克隆扩增。这一过程发生在几种组织中,但在血液中研究得最好。克隆造血与血癌的风险增加有关,如急性髓性白血病,如果发生额外的合作突变,就会导致这种风险。令人惊讶的是,它还与非恶性疾病的风险增加有关,如动脉粥样硬化性心血管疾病。这可能是由于突变的先天免疫细胞的炎症增强,这可能是临床抗炎药物的目标。最近的研究发现了预测克隆造血患者预后不良的其他因素,如突变克隆的大小、突变的驱动基因和表观遗传老化。虽然克隆是不可避免的,而且很大程度上是时间的函数,但最近的研究表明,遗传基因变异也会影响这一过程。克隆造血为理解组织干细胞组成和功能的年龄相关变化如何影响人类健康提供了一个范例。
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引用次数: 11
SARS-CoV-2 Vaccination-Induced Thrombotic Thrombocytopenia: A Rare but Serious Immunologic Complication. SARS-CoV-2疫苗诱导的血栓性血小板减少:一种罕见但严重的免疫并发症。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-043021-015237
Charles S Abrams, Geoffrey D Barnes

Billions of individuals worldwide have benefited from the unprecedented large-scale rollout of COVID-19 vaccines. Given the sheer number of people that have received these vaccines, it is not surprising that rare side effects are reported that were not previously detected in the phase III vaccine trials. This review addresses one rare complication called SARS-CoV-2 vaccination-induced thrombotic thrombocytopenia (VITT). It occurs in approximately 1/50,000 to 1/100,000 recipients of the adenovirus vector-based COVID-19 vaccines made by AstraZeneca-Oxford or Johnson & Johnson. Information on VITT syndrome was disseminated quickly via social media and publications after it was first discovered. Initial observations associating VITT with specific patient populations, thrombus locations, and outcomes associated with heparin therapy have since been refined with additional clinical experience. In this review, we discuss what is currently known about the incidence, pathophysiology, diagnosis, and treatment of VITT.

全球数十亿人从前所未有的COVID-19疫苗大规模推广中受益。鉴于接种这些疫苗的人数众多,报告出现以前在三期疫苗试验中未发现的罕见副作用也就不足为奇了。本文综述了一种罕见的并发症,称为SARS-CoV-2疫苗诱导的血栓性血小板减少症(VITT)。在阿斯利康-牛津公司或强生公司生产的基于腺病毒载体的COVID-19疫苗的接种者中,大约有1/50,000至1/100,000人会发生这种情况。VITT综合征首次被发现后,通过社交媒体和出版物迅速传播。最初的观察结果将VITT与特定的患者群体、血栓位置和与肝素治疗相关的结果联系起来,此后随着额外的临床经验而得到完善。在这篇综述中,我们讨论了目前已知的关于VITT的发病率、病理生理、诊断和治疗。
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引用次数: 6
COVID-19 Thrombotic Complications and Therapeutic Strategies. COVID-19血栓形成并发症和治疗策略。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-042921-110257
Alexander C Fanaroff, Renato D Lopes

Shortly after the emergence of coronavirus disease 2019 (COVID-19) in late 2019, clinicians rapidly recognized an apparent association between the disease and both arterial and venous thrombotic complications, which was confirmed in epidemiologic studies. Based on these data, hospitals empirically developed and implemented protocols with different strategies for anticoagulation of hospitalized COVID-19 patients. Subsequent randomized controlled trials (RCTs) clarified the role of anticoagulation in patients hospitalized with COVID-19 and recently discharged from the hospital. In this review, we discuss the epidemiology and pathophysiology of thrombosis in patients with COVID-19, observational comparative effectiveness analyses that provided hints of a benefit from anticoagulation, and finally the RCTs that established which patients with COVID-19 benefit from treatment-dose anticoagulation. These RCTs have demonstrated that hospitalized, noncritically ill patients with COVID-19 benefit from treatment-dose anticoagulation, but patients who are hospitalized and critically ill, discharged from the hospital, or not hospitalized do not benefit.

2019年底,在2019冠状病毒病(COVID-19)出现后不久,临床医生迅速认识到该疾病与动脉和静脉血栓形成并发症之间存在明显关联,这在流行病学研究中得到了证实。根据这些数据,医院经验性地制定和实施了不同策略的COVID-19住院患者抗凝治疗方案。随后的随机对照试验(RCTs)明确了抗凝治疗在COVID-19住院和近期出院患者中的作用。在这篇综述中,我们讨论了COVID-19患者血栓形成的流行病学和病理生理,观察性比较疗效分析提供了抗凝治疗获益的线索,最后确定了哪些COVID-19患者从治疗剂量抗凝治疗中获益的随机对照试验。这些随机对照试验表明,住院的COVID-19非危重患者受益于治疗剂量的抗凝治疗,但住院和危重患者、出院或未住院的患者没有受益。
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引用次数: 3
Myocardial Infarction with Nonobstructive Coronary Arteries. 非阻塞性冠状动脉心肌梗死。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-042921-111727
H R Reynolds, N R Smilowitz

Myocardial infarction with nonobstructive coronary arteries (MINOCA) is an important subtype of myocardial infarction (MI) that occurs in approximately 6-8% of patients with spontaneous MI who are referred for coronary angiography. MINOCA disproportionately affects women, but men are also affected. Pathogenesis is more variable than in MI with obstructive coronary artery disease (MI-CAD). Dominant mechanisms include atherosclerosis, thrombosis, and coronary artery spasm. Management of MINOCA varies based on the underlying mechanism of infarction. Therefore, systematic approaches to diagnosis are recommended. The combination of invasive coronary angiography, multivessel intracoronary imaging, provocative testing for coronary spasm, and cardiac magnetic resonance imaging provides the greatest diagnostic yield. Current clinical practice guidelines for the secondary prevention of MI are based largely on data from patients with MI-CAD. Thus, optimal medications after MINOCA are uncertain. Clinical trials focused on the treatment of patients with MINOCA are urgently needed to define optimal care.

非阻塞性冠状动脉心肌梗死(MINOCA)是心肌梗死(MI)的一个重要亚型,发生在约6-8%的自发性MI患者中,这些患者接受了冠状动脉造影。MINOCA不成比例地影响女性,但男性也受到影响。其发病机制比心肌梗死合并阻塞性冠状动脉疾病(MI- cad)更为多变。主要机制包括动脉粥样硬化、血栓形成和冠状动脉痉挛。MINOCA的治疗方法因梗死的潜在机制而异。因此,建议采用系统的诊断方法。有创冠状动脉造影、冠状动脉内多血管成像、冠状动脉痉挛刺激试验和心脏磁共振成像的结合提供了最大的诊断结果。目前心肌梗死二级预防的临床实践指南主要基于心肌梗死- cad患者的数据。因此,MINOCA后的最佳药物是不确定的。迫切需要针对MINOCA患者治疗的临床试验来确定最佳治疗方案。
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引用次数: 8
Systemic Lupus Erythematosus: New Diagnostic and Therapeutic Approaches. 系统性红斑狼疮:新的诊断和治疗方法。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-043021-032611
Stephanie Lazar, J Michelle Kahlenberg

Systemic lupus erythematosus (SLE) is a devastating autoimmune disease that can result in substantial morbidity and mortality. Diagnosis and treatment of SLE are clinical challenges. Patient presentation and response to therapy are heterogeneous because of the complex immune dysregulation that results in SLE disease pathogenesis. An intricate interplay between genetic risk and skewing of adaptive and innate immune system responses leads to overproduction of type I interferons and other cytokines, complement activation, immune-complex deposition, and ultimately inflammation and tissue damage. Here, we review the classification criteria as well as standard and emerging diagnostic tools available to identify patients with SLE. We then focus on medical management, including novel therapeutics, nonpharmacologic interventions, and comorbidity management.

系统性红斑狼疮(SLE)是一种毁灭性的自身免疫性疾病,可导致大量的发病率和死亡率。SLE的诊断和治疗是临床的挑战。由于复杂的免疫失调导致SLE疾病的发病机制,患者的表现和对治疗的反应是不同的。遗传风险与适应性和先天免疫系统反应的扭曲之间复杂的相互作用导致I型干扰素和其他细胞因子的过量产生,补体激活,免疫复合物沉积,最终导致炎症和组织损伤。在这里,我们回顾了分类标准以及标准和新兴的诊断工具,可用于识别SLE患者。然后我们将重点放在医疗管理上,包括新疗法、非药物干预和合并症管理。
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引用次数: 24
COVID-19: Challenges of Viral Variants. COVID-19:病毒变体的挑战。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-042921-020956
Jana L Jacobs, Ghady Haidar, John W Mellors

The COVID-19 pandemic has been accompanied by SARS-CoV-2 evolution and emergence of viral variants that have far exceeded initial expectations. Five major variants of concern (Alpha, Beta, Gamma, Delta, and Omicron) have emerged, each having both unique and overlapping amino acid substitutions that have affected transmissibility, disease severity, and susceptibility to natural or vaccine-induced immune responses and monoclonal antibodies. Several of the more recent variants appear to have evolved properties of immune evasion, particularly in cases of prolonged infection. Tracking of existing variants and surveillance for new variants are critical for an effective pandemic response.

COVID-19大流行伴随着SARS-CoV-2的进化和病毒变体的出现,远远超出了最初的预期。已经出现了五种主要的变异(α、β、γ、δ和Omicron),每一种都有独特的和重叠的氨基酸取代,这些取代影响了传播性、疾病严重程度以及对自然或疫苗诱导的免疫反应和单克隆抗体的易感性。最近的几个变种似乎已经进化出免疫逃避的特性,特别是在长期感染的情况下。追踪现有变异和监测新变异对于有效应对大流行至关重要。
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引用次数: 29
Endocrine Disorders and COVID-19. 内分泌失调与COVID-19。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-043021-033509
Seda Hanife Oguz, Bulent Okan Yildiz

The multifaceted interaction between coronavirus disease 2019 (COVID-19) and the endocrine system has been a major area of scientific research over the past two years. While common endocrine/metabolic disorders such as obesity and diabetes have been recognized among significant risk factors for COVID-19 severity, several endocrine organs were identified to be targeted by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). New-onset endocrine disorders related to COVID-19 were reported while long-term effects, if any, are yet to be determined. Meanwhile, the "stay home" measures during the pandemic caused interruption in the care of patients with pre-existing endocrine disorders and may have impeded the diagnosis and treatment of new ones. This review aims to outline this complex interaction between COVID-19 and endocrine disorders by synthesizing the current scientific knowledge obtained from clinical and pathophysiological studies, and to emphasize considerations for future research.

2019冠状病毒病(COVID-19)与内分泌系统之间的多方面相互作用是过去两年科学研究的主要领域。虽然肥胖和糖尿病等常见内分泌/代谢紊乱已被认为是COVID-19严重程度的重要危险因素,但一些内分泌器官已被确定为严重急性呼吸综合征冠状病毒-2 (SARS-CoV-2)的目标。报告了与COVID-19相关的新发内分泌紊乱,但尚未确定是否有长期影响。与此同时,大流行期间的"居家"措施中断了对已有内分泌失调患者的护理,并可能阻碍了对新疾病的诊断和治疗。本文旨在通过综合目前临床和病理生理研究的科学知识,概述COVID-19与内分泌疾病之间的复杂相互作用,并强调未来研究的注意事项。
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引用次数: 5
Cytomegalovirus Therapy: Role of Letermovir in Prophylaxis and Treatment in Transplant Recipients. 巨细胞病毒治疗:莱特莫韦在移植受者预防和治疗中的作用。
IF 10.5 1区 医学 Q1 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2023-01-27 DOI: 10.1146/annurev-med-042921-124739
Jennifer L Saullo, Rachel A Miller

Cytomegalovirus (CMV) is a common viral pathogen in the transplant population and is associated with significant morbidity and mortality. CMV prevention is paramount; however, selecting the best preventive strategy depends on many factors including donor-recipient CMV serostatus, transplant-specific risks, antiviral toxicities and cost. Novel CMV therapeutics such as letermovir (LTV) are desperately needed to optimize CMV management. Uniquely among CMV antiviral therapies, LTV inhibits the viral terminase complex in the CMV DNA synthesis pathway and disrupts viral genome packaging. Further, it lacks side effects frequently associated with other CMV antiviral therapies and evades common mechanisms of resistance. LTV is approved by the US Food and Drug Administration for CMV prevention in adult CMV-seropositive hematopoietic cell transplant recipients but is increasingly applied off-label for prophylaxis and treatment. This review summarizes important concepts of CMV management in transplantation, with a specific focus on LTV pharmacology and clinical experience to date alongside future prospects for its application.

巨细胞病毒(CMV)是移植人群中常见的病毒性病原体,与显著的发病率和死亡率相关。巨细胞病毒预防至关重要;然而,选择最佳的预防策略取决于许多因素,包括供体-受体巨细胞病毒血清状态、移植特异性风险、抗病毒毒性和费用。迫切需要新的巨细胞病毒治疗药物,如letermovir (LTV)来优化巨细胞病毒的管理。在CMV抗病毒治疗中,LTV抑制CMV DNA合成途径中的病毒终止酶复合物并破坏病毒基因组包装。此外,它缺乏与其他巨细胞病毒抗病毒疗法相关的副作用,并且避开了常见的耐药机制。LTV已被美国食品和药物管理局批准用于成年CMV血清阳性造血细胞移植受者的巨细胞病毒预防,但越来越多地用于标签外预防和治疗。本文综述了移植中巨细胞病毒管理的重要概念,特别关注LTV的药理学和临床经验,以及其应用的未来前景。
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引用次数: 2
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