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Annual review of phytopathology最新文献

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Developing Public-Private Partnerships in Plant Pathology Extension: Case Studies and Opportunities in the United States. 在植物病理学推广中发展公私伙伴关系:美国的案例研究和机遇。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2020-08-25 Epub Date: 2020-06-16 DOI: 10.1146/annurev-phyto-030320-041359
Samuel G Markell, Gregory L Tylka, Edwin J Anderson, H Peter van Esse

Public-private partnerships (PPPs) can be an effective and advantageous way to accomplish extension and outreach objectives in plant pathology. The greatest opportunities for extension-focused PPPs may be in response to large-scale or emerging disease management concerns or in addressing complex issues that impact agriculture, such as climate change, digital technology, and public perception of science. The most fertile ground for forming PPPs is where the needs and strengths of the public and private sectors are complementary. Developing PPPs depends as much on professional relationships as on technical skills or contracts. Defining and making room for the success of all partners, identifying and addressing barriers to success, and earning and maintaining trust are components that contribute to the effectiveness of PPPs. Case studies in plant pathology demonstrate the positive impact PPPs can have on partners and stakeholders and provide guidance on the formation of PPPs in the future.

公私合作伙伴关系(ppp)可以是一种有效和有利的方式来完成植物病理学的扩展和推广目标。以推广为重点的公私伙伴关系的最大机会可能是应对大规模或新出现的疾病管理问题,或解决影响农业的复杂问题,如气候变化、数字技术和公众对科学的看法。形成公私合作伙伴关系最肥沃的土壤是公共和私营部门的需求和优势互补的地方。发展公私伙伴关系不仅依赖于技术技能或合同,也同样依赖于专业关系。确定并为所有合作伙伴的成功创造空间,确定并解决成功的障碍,以及赢得和维持信任,这些都是促进公私伙伴关系有效性的组成部分。植物病理学的案例研究证明了公私合作伙伴关系对合作伙伴和利益相关者的积极影响,并为未来公私合作伙伴关系的形成提供指导。
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引用次数: 2
Social Evolution and Cheating in Plant Pathogens. 植物病原体的社会进化与欺骗。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2020-08-25 Epub Date: 2020-06-29 DOI: 10.1146/annurev-phyto-010820-012740
Maren L Friesen

Plant pathogens are a critical component of the microbiome that exist as populations undergoing ecological and evolutionary processes within their host. Many aspects of virulence rely on social interactions mediated through multiple forms of public goods, including quorum-sensing signals, exoenzymes, and effectors. Virulence and disease progression involve life-history decisions that have social implications with large effects on both host and microbe fitness, such as the timing of key transitions. Considering the molecular basis of sequential stages of plant-pathogen interactions highlights many opportunities for pathogens to cheat, and there is evidence for ample variation in virulence. Case studies reveal systems where cheating has been demonstrated and others where it is likely occurring. Harnessing the social interactions of pathogens, along with leveraging novel sensing and -omics technologies to understand microbial fitness in the field, will enable us to better manage plant microbiomes in the interest of plant health.

植物病原体是微生物组的一个重要组成部分,它们作为种群在宿主体内经历生态和进化过程而存在。毒力的许多方面依赖于通过多种形式的公共物品介导的社会互动,包括群体感应信号、外泌酶和效应器。毒力和疾病进展涉及生命史决策,这些决策具有社会意义,对宿主和微生物的适应性都有很大影响,例如关键转变的时机。考虑到植物与病原体相互作用的顺序阶段的分子基础,突出了病原体欺骗的许多机会,并且有证据表明在毒力方面存在大量差异。案例研究揭示了作弊已经被证明的系统和其他可能发生作弊的系统。利用病原体的社会相互作用,以及利用新的传感和组学技术来了解该领域的微生物适应性,将使我们能够更好地管理植物微生物组,以促进植物健康。
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引用次数: 8
The Geopolitics of Plant Pathology: Frederick Wellman, Coffee Leaf Rust, and Cold War Networks of Science. 植物病理学的地缘政治:弗雷德里克·威尔曼、咖啡叶锈病和冷战科学网络。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2020-08-25 DOI: 10.1146/annurev-phyto-082718-100109
Stuart McCook, Paul D Peterson

During the Cold War, coffee became a strategically important crop in the global contest between the United States and the Soviet Union. The economies of many US allies in Latin America depended upon coffee. In the Cold War context, then, the coffee leaf rust (Hemileia vastatrix) became a geopolitical problem. Coffee experts in Latin America, which produced most of the world's coffee, began to prepare for an outbreak. In the 1950s, they built a global network of coffee experts. This network was sustained by US-led Cold War programs that promoted technical collaboration across the Global South, such as Harry Truman's Point Four programs. We explore the network's growth and evolution through one of its central figures, the American plant pathologist Frederick L. Wellman. This network has survived the end of the Cold War and evolved to reflect the new geopolitical context.

冷战期间,在美国和苏联的全球竞争中,咖啡成为一种具有重要战略意义的作物。美国在拉丁美洲的许多盟友的经济依赖于咖啡。因此,在冷战的背景下,咖啡叶锈病(Hemileia vastatrix)成了一个地缘政治问题。世界上大部分咖啡的产地拉丁美洲的咖啡专家开始为疫情的爆发做准备。在20世纪50年代,他们建立了一个全球咖啡专家网络。这个网络是由美国领导的冷战项目维持的,这些项目促进了全球南方的技术合作,比如哈里·杜鲁门的第四点项目。我们通过其核心人物之一,美国植物病理学家弗雷德里克·威尔曼,来探索这个网络的成长和进化。这一网络在冷战结束后幸存下来,并演变为反映新的地缘政治背景。
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引用次数: 1
RPS5-Mediated Disease Resistance: Fundamental Insights and Translational Applications. rps5介导的疾病抗性:基本见解和转化应用。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2020-08-25 Epub Date: 2020-04-13 DOI: 10.1146/annurev-phyto-010820-012733
Sarah E Pottinger, Roger W Innes

Focusing on the discovery and characterization of the Arabidopsis disease resistance protein RPS5 and its guardee PBS1, this review discusses work done in the Innes laboratory from the initial identification of the RPS5 gene in 1995 to the recent deployment of the PBS1 decoy system in crops. This is done through discussion of the structure, function, and signaling environment of RPS5 and PBS1, highlighting collaborations and influential ideas along the way. RPS5, a nucleotide-binding leucine-rich repeat (NLR) protein, is activated by the proteolytic cleavage of PBS1. We have shown that the cleavage site within PBS1 can be altered to contain cleavage sites for other proteases, enabling RPS5 activation by these proteases, thereby conferring resistance to different pathogens. This decoy approach has since been translated into crop species using endogenous PBS1 orthologs and holds strong potential for GMO-free development of new genetic resistance against important crop pathogens.

本文以拟南芥抗病蛋白RPS5及其监护人PBS1的发现和鉴定为重点,综述了Innes实验室从1995年首次发现RPS5基因到最近在作物中部署PBS1诱饵系统所做的工作。这是通过讨论RPS5和PBS1的结构、功能和信号环境来完成的,强调了沿途的合作和有影响力的想法。RPS5是一种核苷酸结合的富含亮氨酸重复(NLR)蛋白,可通过PBS1的蛋白水解裂解激活。我们已经证明,PBS1内的裂解位点可以被改变,以包含其他蛋白酶的裂解位点,从而使RPS5被这些蛋白酶激活,从而赋予对不同病原体的抗性。这种诱骗方法已被转化为利用内源性PBS1同源物的作物物种,并具有强大的潜力,可用于开发针对重要作物病原体的非转基因新遗传抗性。
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引用次数: 20
Interactions and Coadaptation in Plant Metaorganisms. 植物元生物的相互作用和共同适应。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2019-08-30 DOI: 10.1146/annurev-phyto-082718-100008
M. Hassani, Ezgi Özkurt, Heike Seybold, Tal Dagan, E. Stukenbrock
Plants associate with a wide diversity of microorganisms. Some microorganisms engage in intimate associations with the plant host, collectively forming a metaorganism. Such close coexistence with plants requires specific adaptations that allow microorganisms to overcome plant defenses and inhabit plant tissues during growth and reproduction. New data suggest that the plant immune system has a broader role beyond pathogen recognition and also plays an important role in the community assembly of the associated microorganism. We propose that core microorganisms undergo coadaptation with their plant host, with the plant immune system allowing them to persist and propagate on their host. Microorganisms, which are vertically transmitted from generation to generation via plant seeds, putatively compose highly adapted species with plant-beneficial functions. The extent to which plant domestication has impacted the underlying genetics of plant-microbe associations remains poorly understood. We propose that the ability of domesticated plants to select and maintain advantageous microbial partners may have been affected. In this review, we discuss factors that impact plant metaorganism assembly and function. We underline the importance of microbe-microbe interactions in plant tissues, as they are still poorly studied but may have a great impact on plant health. Expected final online publication date for the Annual Review of Phytopathology Volume 57 is August 26, 2019. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
植物与各种各样的微生物有联系。一些微生物与植物宿主密切相关,共同形成一个元生物。这种与植物的紧密共存需要特定的适应,使微生物能够在生长和繁殖过程中克服植物防御并栖息在植物组织中。新数据表明,植物免疫系统在病原体识别之外具有更广泛的作用,在相关微生物的群落组装中也发挥着重要作用。我们提出,核心微生物与其植物宿主进行共适应,植物免疫系统允许它们在宿主上存活和繁殖。微生物通过植物种子垂直代代相传,被认为是具有植物有益功能的高度适应物种。植物驯化在多大程度上影响了植物-微生物组合的潜在遗传学,目前尚不清楚。我们认为驯化植物选择和维持有利微生物伴侣的能力可能受到了影响。在这篇综述中,我们讨论了影响植物元生物组装和功能的因素。我们强调了微生物与微生物在植物组织中相互作用的重要性,因为它们的研究仍然很少,但可能对植物健康产生重大影响。《植物病理学年度评论》第57卷预计最终在线出版日期为2019年8月26日。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 21
A Decade Decoded: Spies and Hackers in the History of TAL Effectors Research. 十年解码:间谍和黑客在TAL效应研究的历史。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2019-08-30 DOI: 10.1146/annurev-phyto-082718-100026
Álvaro L. Pérez-Quintero, B. Szurek
Transcription activator-like effectors (TALEs) from the genus Xanthomonas are proteins with the remarkable ability to directly bind the promoters of genes in the plant host to induce their expression, which often helps bacterial colonization. Metaphorically, TALEs act as spies that infiltrate the plant disguised as high-ranking civilians (transcription factors) to trick the plant into activating weak points that allow an invasion. Current knowledge of how TALEs operate allows researchers to predict their activity (counterespionage) and exploit their function, engineering them to do our bidding (a Manchurian agent). This has been possible thanks particularly to the discovery of their DNA binding mechanism, which obeys specific amino acid-DNA correspondences (the TALE code). Here, we review the history of how researchers discovered the way these proteins work and what has changed in the ten years since the discovery of the code. Recommended music for reading this review can be found in the Supplemental Material. Expected final online publication date for the Annual Review of Phytopathology, Volume 57 is August 26, 2019. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
来自黄单胞菌属(Xanthomonas)的转录激活因子样效应物(Transcription activator-like effector, TALEs)是一种具有直接结合植物寄主基因启动子诱导其表达能力的蛋白质,这通常有助于细菌定植。打个比方,故事扮演间谍的角色,伪装成高级平民(转录因子)潜入植物,诱骗植物激活允许入侵的弱点。目前对“故事”运作方式的了解使研究人员能够预测它们的活动(反间谍)并利用它们的功能,设计它们来执行我们的命令(满洲特工)。这是可能的,特别是由于发现了它们的DNA结合机制,它遵循特定的氨基酸-DNA对应(TALE代码)。在这里,我们回顾了研究人员如何发现这些蛋白质的工作方式的历史,以及自发现密码以来的十年里发生了什么变化。阅读这篇评论的推荐音乐可以在补充材料中找到。《植物病理学年度评论》第57卷的最终在线出版日期预计为2019年8月26日。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 41
Molecular Interactions Between Smut Fungi and Their Host Plants. Smut真菌与其寄主植物之间的分子相互作用。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2019-08-30 DOI: 10.1146/annurev-phyto-082718-100139
Weiliang Zuo, B. Ökmen, J. Depotter, M. Ebert, A. Redkar, Johana Misas Villamil, G. Doehlemann
Smut fungi are a large group of biotrophic plant pathogens that infect mostly monocot species, including economically relevant cereal crops. For years, Ustilago maydis has stood out as the model system to study the genetics and cell biology of smut fungi as well as the pathogenic development of biotrophic plant pathogens. The identification and functional characterization of secreted effectors and their role in virulence have particularly been driven forward using the U. maydis-maize pathosystem. Today, advancing tools for additional smut fungi such as Ustilago hordei and Sporisorium reilianum, as well as an increasing number of available genome sequences, provide excellent opportunities to investigate in parallel the effector function and evolution associated with different lifestyles and host specificities. In addition, genome analyses revealed similarities in the genomic signature between pathogenic smuts and epiphytic Pseudozyma species. This review elaborates on how knowledge about fungal lifestyles, genome biology, and functional effector biology helps in understanding the biology of this important group of fungal pathogens. We highlight the contribution of the U. maydis model system but also discuss the differences from other smut fungi, which raises the importance of comparative genomic and genetic analyses in future research. Expected final online publication date for the Annual Review of Phytopathology Volume 57 is August 26, 2019. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
Smut真菌是一大类生物营养化植物病原体,主要感染单子叶植物物种,包括与经济相关的谷物作物。多年来,玉米黑粉菌一直是研究黑穗病真菌遗传学和细胞生物学以及生物营养化植物病原体致病发展的模式系统。分泌效应子的鉴定和功能表征及其在毒力中的作用,特别是利用玉米毒的致病系统进行了推进。如今,用于其他黑穗病真菌的先进工具,如黑曲霉和赖氏孢子虫,以及越来越多的可用基因组序列,为并行研究与不同生活方式和宿主特异性相关的效应器功能和进化提供了极好的机会。此外,基因组分析揭示了致病性黑穗病和附生性假合子物种之间基因组特征的相似性。这篇综述阐述了真菌生活方式、基因组生物学和功能效应生物学的知识如何帮助理解这一重要真菌病原体的生物学。我们强调了U.maydis模型系统的贡献,但也讨论了与其他黑穗病真菌的差异,这提高了比较基因组和遗传分析在未来研究中的重要性。《植物病理学年度评论》第57卷预计最终在线出版日期为2019年8月26日。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 49
Surviving in a Hostile World: Plant Strategies to Resist Pests and Diseases. 在一个充满敌意的世界中生存:植物抵抗病虫害的策略。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2019-08-30 DOI: 10.1146/annurev-phyto-082718-095959
S. Wilkinson, M. Mageroy, A. L. Sánchez, A. L. Sánchez, Lisa M. Smith, L. Furci, T. A. Cotton, P. Krokene, J. Ton
As primary producers, plants are under constant pressure to defend themselves against potentially deadly pathogens and herbivores. In this review, we describe short- and long-term strategies that enable plants to cope with these stresses. Apart from internal immunological strategies that involve physiological and (epi)genetic modifications at the cellular level, plants also employ external strategies that rely on recruitment of beneficial organisms. We discuss these strategies along a gradient of increasing timescales, ranging from rapid immune responses that are initiated within seconds to (epi)genetic adaptations that occur over multiple plant generations. We cover the latest insights into the mechanistic and evolutionary underpinnings of these strategies and present explanatory models. Finally, we discuss how knowledge from short-lived model species can be translated to economically and ecologically important perennials to exploit adaptive plant strategies and mitigate future impacts of pests and diseases in an increasingly interconnected and changing world.
作为初级生产者,植物不断承受着保护自己免受潜在致命病原体和食草动物侵害的压力。在这篇综述中,我们描述了使植物能够应对这些压力的短期和长期策略。除了涉及细胞水平的生理和(epi)基因修饰的内部免疫策略外,植物还采用依赖于有益生物体募集的外部策略。我们沿着一个不断增加的时间梯度来讨论这些策略,从几秒钟内启动的快速免疫反应到在多代植物中发生的(epi)遗传适应。我们涵盖了对这些策略的机制和进化基础的最新见解,并提出了解释模型。最后,我们讨论了如何将短命模式物种的知识转化为具有经济和生态重要性的多年生植物,以利用适应性植物策略,并在日益互联和变化的世界中减轻病虫害的未来影响。
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引用次数: 87
Never Walk Alone: Clathrin-Coated Vesicle (CCV) Components in Plant Immunity. 永远不要独行:氯氰菊酯包膜囊泡(CCV)在植物免疫中的成分。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2019-08-30 DOI: 10.1146/annurev-phyto-080417-045841
G. Ekanayake, Erica D. LaMontagne, Antje Heese
At the host-pathogen interface, the protein composition of the plasma membrane (PM) has important implications for how a plant cell perceives and responds to invading microbial pathogens. A plant's ability to modulate its PM composition is critical for regulating the strength, duration, and integration of immune responses. One mechanism by which plant cells reprogram their cell surface is vesicular trafficking, including secretion and endocytosis. These trafficking processes add or remove cargo proteins (such as pattern-recognition receptors, transporters, and other proteins with immune functions) to or from the PM via small, membrane-bound vesicles. Clathrin-coated vesicles (CCVs) that form at the PM and trans-Golgi network/early endosomes have emerged as the prominent vesicle type in the regulation of plant immune responses. In this review, we discuss the roles of the CCV core, adaptors, and accessory components in plant defense signaling and immunity against various microbial pathogens. Expected final online publication date for the Annual Review of Phytopathology, Volume 57 is August 26, 2019. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在宿主-病原体界面,质膜(PM)的蛋白质组成对植物细胞如何感知和应对入侵的微生物病原体具有重要意义。植物调节PM成分的能力对于调节免疫反应的强度、持续时间和整合至关重要。植物细胞重新编程细胞表面的一种机制是囊泡运输,包括分泌和内吞。这些运输过程通过小的膜结合囊泡将货物蛋白(如模式识别受体、转运蛋白和其他具有免疫功能的蛋白质)添加到PM或从PM中移除。在PM和反式高尔基体网络/早期内体处形成的氯氰菊酯包被囊泡(CCVs)已成为调节植物免疫反应的主要囊泡类型。在这篇综述中,我们讨论了CCV核心、衔接子和辅助成分在植物防御信号和对各种微生物病原体的免疫中的作用。《植物病理学年度评论》第57卷预计最终在线出版日期为2019年8月26日。请参阅http://www.annualreviews.org/page/journal/pubdates用于修订估算。
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引用次数: 23
Plant Virus Vectors 3.0: Transitioning into Synthetic Genomics. 植物病毒载体3.0:过渡到合成基因组学。
IF 10.2 1区 农林科学 Q1 PLANT SCIENCES Pub Date : 2019-08-25 Epub Date: 2019-06-11 DOI: 10.1146/annurev-phyto-082718-100301
Will B Cody, Herman B Scholthof

Plant viruses were first implemented as heterologous gene expression vectors more than three decades ago. Since then, the methodology for their use has varied, but we propose it was the merging of technologies with virology tools, which occurred in three defined steps discussed here, that has driven viral vector applications to date. The first was the advent of molecular biology and reverse genetics, which enabled the cloning and manipulation of viral genomes to express genes of interest (vectors 1.0). The second stems from the discovery of RNA silencing and the development of high-throughput sequencing technologies that allowed the convenient and widespread use of virus-induced gene silencing (vectors 2.0). Here, we briefly review the events that led to these applications, but this treatise mainly concentrates on the emerging versatility of gene-editing tools, which has enabled the emergence of virus-delivered genetic queries for functional genomics and virology (vectors 3.0).

三十多年前,植物病毒首次作为异源基因表达载体被实现。从那时起,它们的使用方法发生了变化,但我们认为它是技术与病毒学工具的融合,这发生在这里讨论的三个明确的步骤中,这推动了病毒载体的应用。首先是分子生物学和反向遗传学的出现,这使得克隆和操纵病毒基因组来表达感兴趣的基因(载体1.0)成为可能。第二次源于RNA沉默的发现和高通量测序技术的发展,这使得病毒诱导基因沉默的方便和广泛使用(vector 2.0)。在这里,我们简要回顾了导致这些应用的事件,但这篇论文主要集中在基因编辑工具的新兴多功能性上,这使得功能基因组学和病毒学(vectors 3.0)的病毒传递遗传查询的出现成为可能。
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引用次数: 48
期刊
Annual review of phytopathology
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