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Hidden duality and accidental degeneracy in cycloacene and Möbius cycloacene 环二烯和Möbius环二烯的隐性对偶和偶然简并
Pub Date : 2020-08-05 DOI: 10.1063/5.0031586
E. Sadurní, F. Leyvraz, T. Stegmann, T. Seligman, D. Klein
The accidental degeneracy appearing in cycloacenes as triplets and quadruplets is explained with the concept of segmentation, introduced here with the aim of describing the effective disconnection of $pi$ orbitals on these organic compounds. For periodic systems with time reversal symmetry, the emergent nodal domains are shown to divide the atomic chains into simpler carbon structures analog to benzene rings, diallyl chains, anthracene (triacene) chains and tetramethyl-naphtalene skeletal forms. The common electronic levels of these segments are identified as members of degenerate multiplets of the global system. The peculiar degeneracy of Mobius cycloacene is also explained by segmentation. In the last part, it is shown that the multiplicity of energies for cycloacene can be foreseen by studying the continuous limit of the tight-binding model; the degeneracy conditions are put in terms of Chebyshev polynomials. The results obtained in this work have important consequences on the physics of electronic transport in organic wires, together with their artificial realizations.
用分割的概念解释了环二烯中出现的三联体和四联体的偶然简并,这里引入分割的目的是描述这些有机化合物上$pi$轨道的有效断开。对于具有时间反转对称性的周期系统,涌现节点域将原子链划分为简单的碳结构,类似于苯环、二烯丙基链、蒽(三烯)链和四甲基萘骨架形式。这些段的共同电子能级被确定为全球系统的简并多重子的成员。用分节法解释了莫比乌斯环阿塞尼的特殊简并现象。最后,通过研究紧密结合模型的连续极限,证明了环芳烃的能量多样性是可以预测的;简并条件用切比雪夫多项式表示。本工作所获得的结果对有机导线中电子输运的物理学及其人工实现具有重要的影响。
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引用次数: 3
The seniority quantum number in Tensor Network States 张量网络状态中的优先量子数
Pub Date : 2020-08-03 DOI: 10.21468/SCIPOSTCHEM.1.1.001
Klaas Gunst, D. Neck, P. Limacher, S. Baerdemacker
We employ tensor network methods for the study of the seniority quantum number - defined as the number of unpaired electrons in a many-body wave function - in molecular systems. Seniority-zero methods recently emerged as promising candidates to treat strong static correlations in molecular systems, but are prone to deficiencies related to dynamical correlation and dispersion. We systematically resolve these deficiencies by increasing the allowed seniority number using tensor network methods. In particular, we investigate the number of unpaired electrons needed to correctly describe the binding of the neon and nitrogen dimer and the $D_{6h}$ symmetry of benzene.
我们采用张量网络方法来研究分子系统中的优先量子数-定义为多体波函数中未配对电子的数量。零经验方法最近成为处理分子系统中强静态相关性的有希望的候选方法,但容易出现与动态相关性和色散相关的缺陷。我们通过使用张量网络方法增加允许的资历数来系统地解决这些缺陷。特别地,我们研究了正确描述氖和氮二聚体结合和苯的$D_{6h}$对称性所需的未配对电子的数目。
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引用次数: 3
A Neural Network Inspired Formulation of Chemical Kinetics 一个受神经网络启发的化学动力学公式
Pub Date : 2020-07-31 DOI: 10.3390/en14092710
S. Barwey, V. Raman
A method which casts the chemical source term computation into an artificial neural network (ANN)-inspired form is presented. This approach is well-suited for use on emerging supercomputing platforms that rely on graphical processing units (GPUs). The resulting equations allow for a GPU-friendly matrix-multiplication based source term estimation where the leading dimension (batch size) can be interpreted as the number of chemically reacting cells in the domain; as such, the approach can be readily adapted in high-fidelity solvers for which an MPI rank offloads the source term computation task for a given number of cells to the GPU. Though the exact ANN-inspired recasting shown here is optimal for GPU environments as-is, this interpretation allows the user to replace portions of the exact routine with trained, so-called approximate ANNs, where the goal of these approximate ANNs is to increase computational efficiency over the exact routine counterparts. Note that the main objective of this paper is not to use machine learning for developing models, but rather to represent chemical kinetics using the ANN framework. The end result is that little-to-no training is needed, and the GPU-friendly structure of the ANN formulation during the source term computation is preserved. The method is demonstrated using chemical mechanisms of varying complexity on both 0-D auto-ignition and 1-D channel detonation problems, and the details of performance on GPUs are explored.
提出了一种将化学源项计算转化为人工神经网络形式的方法。这种方法非常适合在依赖图形处理单元(gpu)的新兴超级计算平台上使用。所得方程允许基于gpu的友好矩阵乘法的源项估计,其中领先维度(批大小)可以解释为域内化学反应细胞的数量;因此,该方法可以很容易地适用于高保真解算器,其中MPI排名将给定数量单元的源项计算任务卸载给GPU。虽然这里显示的受人工神经网络启发的精确重铸对于GPU环境是最佳的,但这种解释允许用户用训练好的所谓的近似人工神经网络替换部分精确例程,其中这些近似人工神经网络的目标是提高精确例程对应的计算效率。请注意,本文的主要目标不是使用机器学习来开发模型,而是使用人工神经网络框架来表示化学动力学。最终结果是几乎不需要训练,并且在源项计算过程中保留了神经网络公式的gpu友好结构。该方法在0-D自动点火和1-D通道爆炸问题上使用不同复杂性的化学机制进行了演示,并探讨了gpu性能的细节。
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引用次数: 1
Proton-transfer dynamics in ionized water chains using real-time time-dependent density functional theory 利用实时时变密度泛函理论的离子水链中的质子转移动力学
Pub Date : 2020-07-22 DOI: 10.1103/physrevresearch.2.043082
Vidushi Sharma, M. Fernández-Serra
In density functional-theoretic studies of photoionized water-based systems, the role of charge localization in proton-transfer dynamics is not well understood. This is due to the inherent complexity in extracting the contributions of coupled electron-nuclear non-adiabatic dynamics in the presence of exchange and correlation functional errors. In this work, we address this problem by simulating a model system of ionized linear H-bonded water clusters using real-time Time Dependent Density Functional Theory (rt-TDDFT)-based Ehrenfest dynamics. Our aim is to understand how self-interaction error in semilocal exchange and correlation functionals affects the probability of proton transfer. In particular, we show that for H-bonded (H$_2$O)$_n^+$ chains (with $n>3$), the proton-transfer probability attains a maximum, becoming comparable to that predicted by hybrid functionals. This is because the formation of hemibonded-type geometries is largely suppressed in extended H-bonded structures. We also show how the degree of localization of the initial photo-hole is connected to the probability of a proton-transfer reaction, as well as to the separation between electronic and nuclear charge. These results are compared to those obtained with adiabatic dynamics where the initial wavefunction is allowed to relax to the ground state of the ion cluster, explaining why different functionals and dynamical approaches lead to quantitatively different results.
在密度functional-theoretic星群水基系统的研究,负责的角色定位在质子转移动力学原因还不是很清楚。这是由于在存在交换和相关泛函误差的情况下提取耦合电子-核非绝热动力学的贡献固有的复杂性。在这项工作中,我们通过使用基于实时时变密度泛函理论(rt-TDDFT)的Ehrenfest动力学模拟电离线性h键水团簇的模型系统来解决这个问题。我们的目的是了解半局部交换和相关泛函中的自相互作用误差如何影响质子转移的概率。特别地,我们发现对于H键(H$_2$O)$_n^+$链($n>3$),质子转移概率达到最大值,与杂化泛函预测的结果相当。这是因为在扩展的氢键结构中,半键型几何形状的形成在很大程度上受到抑制。我们还展示了初始光空穴的定位程度如何与质子转移反应的概率以及电子荷和原子核荷之间的分离联系在一起。这些结果与绝热动力学得到的结果进行了比较,在绝热动力学中,允许初始波函数松弛到离子簇的基态,解释了为什么不同的函数和动力学方法会导致定量不同的结果。
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引用次数: 1
Vibrational sum frequency scattering in absorptive media: A theoretical case study of nano-objects water 吸收介质中的振动和频率散射:纳米物体水的理论研究
Pub Date : 2020-07-21 DOI: 10.1021/acs.jpcc.0c05196.s001
S. Kulik, S. Pullanchery, S. Roke
The structures of interfaces of nano- and microscale objects in aqueous solution are important for a wide variety of physical, chemical and biological processes. Vibrational sum frequency scattering has emerged as a useful and unique probe of the interfacial structure of nano- and microscale objects in water. However, the full surface vibrational stretch mode spectrum has not been measured yet, even though it would be extremely informative to do so. The reason for this is that probing the vibrational modes of interfacial water requires a full understanding of how the linear absorptive properties of the bulk aqueous medium influence the sum frequency scattering process. Here, we have simulated vibrational sum frequency scattering spectra of the interface of nanoscale objects dispersed in water. We analyzed the effect of the infrared pulse absorption on the outcome of surface vibrational sum frequency scattering measurements. We find that both infrared absorption as well as the type of optical detection can drastically modify the measured vibrational interfacial spectrum. The observed changes comprise spectral distortion, frequency shifting of the main vibrational stretch mode and the introducing of a new high frequency peak. This last feature is enhanced by non-resonant interactions.
纳米和微尺度物体在水溶液中的界面结构对各种物理、化学和生物过程具有重要意义。振动和频散射已成为研究水中纳米和微尺度物体界面结构的一种有用而独特的方法。然而,完整的表面振动拉伸模谱还没有被测量,尽管这样做会提供非常多的信息。其原因是,探测界面水的振动模式需要充分了解大块水介质的线性吸收特性如何影响和频散射过程。在此,我们模拟了分散在水中的纳米尺度物体界面的振动和频率散射谱。分析了红外脉冲吸收对表面振动和频散射测量结果的影响。我们发现,红外吸收和光学探测类型都可以极大地改变测量的振动界面谱。观察到的变化包括频谱畸变、主振动拉伸模式的频移和新的高频峰值的引入。非共振相互作用增强了最后一个特征。
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引用次数: 1
Critical Benchmarking of the G4(MP2) Model, the Correlation Consistent Composite Approach and Popular Density Functional Approximations on a Probabilistically Pruned Benchmark Dataset of Formation Enthalpies G4(MP2)模型的临界基准测试、相关一致复合方法和基于概率剪枝生成焓基准数据集的流行密度泛函逼近
Pub Date : 2020-07-13 DOI: 10.26434/chemrxiv.12647033.v1
Sambit Das, S. Chakraborty, R. Ramakrishnan
First-principles calculation of the standard formation enthalpy, $Delta H_f^0$~(298K), in such large scale as required by chemical space explorations, is amenable only with density functional approximations (DFAs) and some composite wave function theories (cWFTs). Alas, the accuracies of popular range-separated hybrid, `rung-4' DFAs, and cWFTs that offer the best accuracy-vs.-cost trade-off have as yet been established only for datasets predominantly comprising small molecules, hence, their transferability to larger datasets remains vague. In this study, we present an extended benchmark dataset of over two-thousand values of $Delta H_f^0$ for structurally and electronically diverse molecules. We apply quartile-ranking based on boundary-corrected kernel density estimation to filter outliers and arrive at Probabilistically Pruned Enthalpies of 1908 compounds (PPE1908). For this dataset, we rank the prediction accuracies of G4(MP2), ccCA and 23 popular DFAs using conventional and probabilistic error metrics. We discuss systematic prediction errors and highlight the role an empirical higher-level correction (HLC) plays in the G4(MP2) model. Furthermore, we comment on uncertainties associated with the reference empirical data for atoms and systematic errors introduced by these that grow with the molecular size. We believe these findings to aid in identifying meaningful application domains for quantum thermochemical methods.
标准生成焓$Delta H_f^0$~(298K)的第一性原理计算,在化学空间勘探所要求的如此大的尺度下,只能用密度泛函近似(dfa)和一些复合波函数理论(cWFTs)来进行。唉,流行的距离分离混合,' rung-4' dfa和cwft的精度提供了最好的精度vs。-成本权衡目前只建立在主要由小分子组成的数据集上,因此,它们对更大数据集的可转移性仍然模糊。在这项研究中,我们提出了一个扩展的基准数据集,其中包含超过2000个结构和电子多样性分子的$Delta H_f^0$值。我们应用基于边界校正核密度估计的四分位排序来过滤异常值,并得到1908化合物的概率修剪焓(PPE1908)。对于这个数据集,我们使用常规和概率误差指标对G4(MP2)、ccCA和23个流行的dfa的预测精度进行了排名。我们讨论了系统预测误差,并强调了经验高水平校正(HLC)在G4(MP2)模型中的作用。此外,我们还评论了与原子参考经验数据相关的不确定性以及这些数据随着分子大小的增长而引入的系统误差。我们相信这些发现有助于确定量子热化学方法的有意义的应用领域。
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引用次数: 0
Potential-energy curve for the a3Σu+ state of a lithium dimer with Slater-type orbitals 具有slater型轨道的锂二聚体a3Σu+态的势能曲线
Pub Date : 2020-06-29 DOI: 10.1103/physreva.102.062806
M. Lesiuk, M. Musiał, R. Moszynski
We report state-of-the-art ab initio calculations of the potential energy curve for the $a^3Sigma_u^+$ state of the lithium dimer conducted to achieve spectroscopic accuracy ($<$1cm$^{-1}$) without any prior adjustment to fit the corresponding experimental data. The nonrelativistic clamped-nuclei component of the interaction energy is calculated with a composite method involving six-electron coupled cluster and full configuration interaction theories combined with basis sets of Slater-type orbitals ranging in quality from double- to sextuple-zeta. To go beyond the nonrelativistic Born-Oppenheimer picture we include both the leading-order relativistic and adiabatic corrections, and find both of these effects to be non-negligible within the present accuracy standards. The potential energy curve developed by us allowed to calculate molecular parameters ($D_e$, $D_0$, $omega_e$ etc.) for this system, as well as the corresponding vibrational energy levels, with an error of only a few tenths of a wavenumber ($0.2-0.4,$cm$^{-1}$). We also report an ab initio value for the scattering length of two $^2S$ lithium atoms which determines the stability of the related Bose-Einstein condensate.
为了达到光谱精度($<$ 1cm $^{-1}$),无需事先调整以拟合相应的实验数据,我们报告了对锂二聚体$a^3Sigma_u^+$状态的势能曲线进行的最先进的从头计算。用一种复合方法计算了相互作用能的非相对论夹核分量,该方法涉及六电子耦合簇和全构型相互作用理论,并结合从双zeta到六zeta的slater型轨道基集。为了超越非相对论的玻恩-奥本海默图,我们包括了一级相对论和绝热修正,并发现这两种影响在目前的精度标准内都是不可忽略的。我们开发的势能曲线允许计算该系统的分子参数($D_e$, $D_0$, $omega_e$等),以及相应的振动能级,误差仅为波数的十分之一($0.2-0.4,$ cm $^{-1}$)。我们还报道了两个$^2S$锂原子的散射长度的从头计算值,这决定了相关玻色-爱因斯坦凝聚体的稳定性。
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引用次数: 2
Revealing a full quantum ladder by nonlinear spectroscopy 用非线性光谱学揭示全量子阶梯
Pub Date : 2020-06-24 DOI: 10.3952/physics.v60i3.4302
D. Abramavičius
Coherent two-dimensional spectroscopy in IR or visible region is very effective for studying correlations, energy relaxation/transfer pathways in complex multi-chromophore or multi-mode systems. However it is usually restricted up to two-quanta excitations and their properties. In this paper an arbitrary level of excitation is suggested as the utility to scan nonlinear potential surfaces of quantum systems up to a desired excitation degree. This can be achieved by a simple three-pulse laser spectroscopy approach. Accurate evaluation of high-level anharmonicities as well as transition amplitudes can be directly obtained. Additionally, questions regarding the quantum nature of the probed system can be addressed by studying absolute peak positions.
红外或可见光区相干二维光谱对于研究复杂的多色团或多模系统中的相关关系、能量弛豫/转移途径是非常有效的。然而,它通常仅限于双量子激发及其性质。本文提出了一种利用任意激励水平扫描量子系统的非线性势面达到所需激励程度的方法。这可以通过简单的三脉冲激光光谱方法来实现。可以直接获得高阶非调和度和过渡幅值的准确评价。此外,关于被探测系统的量子性质的问题可以通过研究绝对峰位置来解决。
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引用次数: 4
Enhanced optical nonlinearities under collective strong light-matter coupling 集体强光-物质耦合下增强的光学非线性
Pub Date : 2020-06-15 DOI: 10.1103/PhysRevA.103.063111
R. Ribeiro, Jorge A. Campos-Gonzalez-Angulo, N. Giebink, Wei Xiong, J. Yuen-Zhou
Optical microcavities and metallic nanostructures have been shown to significantly modulate the dynamics and spectroscopic response of molecular systems. We present a study of the nonlinear optics of a model consisting of $N$ anharmonic multilevel systems (e.g., Morse oscillators) undergoing collective strong coupling with a resonant infrared microcavity. We find that, under experimentally accessible conditions, molecular systems in microcavities may have nonlinear phenomena significantly intensified due to the high quality of polariton resonances and the enhanced microcavity electromagnetic energy density relative to free space. Particularly large enhancement of multiphoton absorption happens when multipolariton states are resonant with bare molecule multiphoton transitions. In particular, our model predicts two-photon absorption cross section enhancements by several orders of magnitude relative to free space when the Rabi splitting $Omega_R$ is approximately equal to the molecular anharmonic shift $2Delta$. Our results provide rough upper bounds to resonant nonlinear response enhancement factors as relaxation to dark states is treated phenomenologically. Notably, ensembles of two-level systems undergoing strong coupling with a cavity (described by the Tavis-Cummings model) show no such optical nonlinearity enhancements, highlighting the rich phenomenology afforded by multilevel anharmonic systems. Similar conclusions are expected to hold for excitonic systems that share features with our model (e.g., molecular dyes with accessible S_0 -> S_1 -> S_2 transitions) and strongly interact with a UV-visible cavity.
光学微腔和金属纳米结构已被证明可以显著调节分子系统的动力学和光谱响应。我们提出了一个非线性光学模型的研究,该模型由$N$非谐波多能级系统(如莫尔斯振子)与谐振红外微腔进行集体强耦合组成。我们发现,在实验条件下,由于高质量的极化子共振和相对于自由空间增强的微腔电磁能量密度,微腔中的分子系统的非线性现象可能会显著加剧。当多极化态与裸分子的多光子跃迁共振时,多光子吸收会发生特别大的增强。特别是,我们的模型预测,当Rabi分裂$Omega_R$近似等于分子非调和位移$2Delta$时,相对于自由空间,双光子吸收截面增强了几个数量级。我们的结果提供了共振非线性响应增强因子的粗略上界,因为对暗态的松弛进行了现象学处理。值得注意的是,与空腔强耦合的两能级系统的系综(由Tavis-Cummings模型描述)没有显示出这种光学非线性增强,突出了多能级非调和系统提供的丰富现象学。对于与我们的模型具有相同特征的激子系统(例如,具有可访问的S_0 -> S_1 -> S_2跃迁的分子染料)和与紫外可见腔强烈相互作用的激子系统,预计也会得出类似的结论。
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引用次数: 16
Analytic First and Second Derivatives for the Fragment Molecular Orbital Method Combined with Molecular Mechanics 结合分子力学的碎片分子轨道法解析一阶导数和二阶导数
Pub Date : 2020-05-18 DOI: 10.22541/au.158985728.81035863
H. Nakata, D. Fedorov
Analytic first and second derivatives of the energy are developed for the fragment molecular orbital method interfaced with molecular mechanics in the electrostatic embedding scheme at the level of Hartree-Fock and density functional theory. The importance of the orbital response terms is demonstrated. The role of the electrostatic embedding upon molecular vibrations is analyzed, comparing force field and quantum-mechanical treatments for an ionic liquid and a solvated protein. The method is applied for 100 protein conformations sampled in MD to take into account the complexity of a flexible protein structure in solution, and a good agreement to experimental data is obtained: frequencies from an experimental IR spectrum are reproduced within 17 cm$^{-1}$.
在Hartree-Fock和密度泛函理论的水平上,对静电嵌入方案中与分子力学相结合的碎片分子轨道法,建立了能量的一阶和二阶解析导数。论证了轨道响应项的重要性。分析了静电嵌入对分子振动的影响,比较了离子液体和溶剂化蛋白质的力场和量子力学处理。考虑到溶液中柔性蛋白质结构的复杂性,将该方法应用于MD中采样的100种蛋白质构象,与实验数据吻合良好:实验红外光谱的频率在17 cm$^{-1}$范围内得到再现。
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引用次数: 1
期刊
arXiv: Chemical Physics
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